Structural Classification of Proteins
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Family: 6-phosphogluconate dehydrogenase-like, N-terminal domain

the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
C-terminal domains also show some similarity

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: 6-phosphogluconate dehydrogenase-like, N-terminal domain [51868]
    the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
    C-terminal domains also show some similarity

Protein Domains:

  1. Class I ketol-acid reductoisomerase (KARI) [89532]
    1. Pseudomonas aeruginosa [TaxId: 287] [89533] (1)
      1. 1np3 picpicxref
        1. region a:1-182 [85947] picpiclink
        2. region b:1-182 [85949] picpiclink
        3. region c:1-182 [85951] picpiclink
        4. region d:1-182 [85953] picpiclink
  2. Class II ketol-acid reductoisomerase (KARI) [51869]
    contains additional subdomain at the N-terminus, partly ordered
    1. Spinach (Spinacia oleracea) [TaxId: 3562] [51870] (2)
      1. 1qmg picpicxref
        complexed with apx, dmv, mn, so4
        1. region a:82-307 [30182] picpiclink
        2. region b:86-307 [30183] picpiclink
        3. region c:84-307 [30184] picpiclink
        4. region d:83-307 [30185] picpiclink
      2. 1yve picpicxref
        complexed with cl, hio, mg, ndp
        1. region i:83-307 [30186] picpiclink
        2. region j:86-307 [30187] picpiclink
        3. region k:86-307 [30188] picpiclink
        4. region l:83-307 [30189] picpiclink
  3. 6-phosphogluconate dehydrogenase [51871]
    1. Sheep (Ovis orientalis aries) [TaxId: 9940] [51872] (5)
      1. 2pgd picpicxref
        complexed with so4
        1. region a:1-176 [30190] picpiclink
      2. 1pgp picpicxref
        complexed with 6pg, so4
        1. region a:1-176 [30192] picpiclink
      3. 1pgo picpicxref
        complexed with ndp, so4
        1. region a:1-176 [30191] picpiclink
      4. 1pgn picpicxref
        complexed with nbp, pop, so4
        1. region a:1-176 [30193] picpiclink
      5. 1pgq picpicxref
        complexed with 2am, so4
        1. region a:1-176 [30194] picpiclink
    2. Trypanosoma brucei [TaxId: 5691] [51873] (1)
      1. 1pgj picpicxref
        complexed with so4
        1. region a:1-178 [30195] picpiclink
        2. region b:1-178 [30196] picpiclink
  4. Hydroxyisobutyrate dehydrogenase [102171]
    1. Thermus thermophilus [TaxId: 274] [102172] (8)
      structural genomics
      1. 2cvz picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp
        1. region a:2-157 [130891] picpiclink
      2. 2cvz picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp
        1. region b:2-157 [130893] picpiclink
      3. 2cvz picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp
        1. region c:2-157 [130895] picpiclink
      4. 2cvz picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp
        1. region d:2-157 [130897] picpiclink
      5. 1wp4 picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp, so4
        1. region a:2-157 [121136] picpiclink
      6. 1wp4 picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp, so4
        1. region b:2-157 [121138] picpiclink
      7. 1wp4 picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp, so4
        1. region c:2-157 [121140] picpiclink
      8. 1wp4 picpicxrefxrefxrefxref
        automatically matched to d1j3vc2
        complexed with ndp, so4
        1. region d:2-157 [121142] picpiclink
    2. Salmonella typhimurium [TaxId: 90371] [110431] (1)
      SQ Q8ZLV8
      1. 1vpd picpicxref
        Structural genomics target
        complexed with cl, tla
        1. region a:3-163 [113952] picpiclink
    3. Pseudomonas aeruginosa [TaxId: 287] [159424] (1)
      SQ Q9I5I6 1-162
      1. 3cum picpicxref
        complexed with act, edo, peg
        1. region a:1-162 [156996] picpiclink
  5. Mannitol 2-dehydrogenase [82301]
    1. Pseudomonas fluorescens [TaxId: 294] [82302] (2)
      1. 1lj8 picpicxref
        complexed with mse, nad
        1. region a:1-286 [90393] picpiclink
      2. 1m2w picpicxref
        complexed with mse, mtl, nad
        1. region a:1-286 [90395] picpiclink
        2. region b:1-286 [90397] picpiclink
  6. Short chain L-3-hydroxyacyl CoA dehydrogenase [51874]
    1. Human (Homo sapiens) [TaxId: 9606] [51875] (11)
      1. 1f0y picpicxref
        complexed with caa, nad
        1. region a:12-203 [30197] picpiclink
        2. region b:12-203 [30198] picpiclink
      2. 3had picpicxref
        1. region a:12-203 [30203] picpiclink
        2. region b:12-203 [30204] picpiclink
      3. 1m76 picpicxref
        complexed with caa, nad; mutant
        1. region a:12-203 [91217] picpiclink
        2. region b:12-203 [91219] picpiclink
      4. 2hdh picpicxref
        complexed with nad
        1. region a:12-203 [30199] picpiclink
        2. region b:12-203 [30200] picpiclink
      5. 1f14 picpicxref
        mutant
        1. region a:12-203 [30205] picpiclink
        2. region b:12-203 [30206] picpiclink
      6. 1f17 picpicxref
        complexed with nai; mutant
        1. region a:12-203 [30201] picpiclink
        2. region b:12-203 [30202] picpiclink
      7. 1il0 picpicxref
        complexed with caa, nad; mutant
        1. region a:12-203 [66190] picpiclink
        2. region b:12-203 [66192] picpiclink
      8. 1f12 picpicxref
        complexed with 3hc; mutant
        1. region a:12-203 [30207] picpiclink
        2. region b:12-203 [30208] picpiclink
      9. 1m75 picpicxref
        complexed with caa, nad; mutant
        1. region a:12-203 [91213] picpiclink
        2. region b:12-203 [91215] picpiclink
      10. 1lsj picpicxref
        complexed with nad; mutant
        1. region a:12-203 [91117] picpiclink
        2. region b:12-203 [91119] picpiclink
      11. 1lso picpicxref
        complexed with nad; mutant
        1. region a:12-203 [91121] picpiclink
        2. region b:12-203 [91123] picpiclink
    2. Pig (Sus scrofa) [TaxId: 9823] [51876] (1)
      1. 3hdh picpicxref
        complexed with nad
        1. region a:12-203 [30209] picpiclink
        2. region b:12-203 [30210] picpiclink
        3. region c:12-203 [30211] picpiclink
  7. Conserved hypothetical protein MTH1747 [75113]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [75114] (1)
      1. 1i36 picpicxref
        complexed with nap; mutant
        1. region a:1-152 [71109] picpiclink
        2. region b:1-152 [71111] picpiclink
  8. UDP-glucose dehydrogenase (UDPGDH) [51877]
    1. Streptococcus pyogenes [TaxId: 1314] [51878] (2)
      1. 1dlj picpicxrefxref
        complexed with gol, nai, so4, uga; mutant
        1. region a:1-196 [30212] picpiclink
      2. 1dli picpicxrefxref
        complexed with gol, nad, so4, udx
        1. region a:1-196 [30213] picpiclink
  9. GDP-mannose 6-dehydrogenase [89534]
    1. Pseudomonas aeruginosa [TaxId: 287] [89535] (3)
      1. 1mv8 picpicxrefxref
        complexed with acy, gdx, mpd, nad, suc
        1. region a:1-202 [85129] picpiclink
        2. region b:1-202 [85132] picpiclink
        3. region c:1-202 [85135] picpiclink
        4. region d:1-202 [85138] picpiclink
      2. 1muu picpicxrefxref
        complexed with gdx, mse, nad, suc
        1. region a:1-202 [85117] picpiclink
        2. region b:1-202 [85120] picpiclink
        3. region c:1-202 [85123] picpiclink
        4. region d:1-202 [85126] picpiclink
      3. 1mfz picpicxrefxref
        complexed with gdx, mse
        1. region a:1-202 [84942] picpiclink
        2. region b:1-202 [84945] picpiclink
        3. region c:1-202 [84948] picpiclink
        4. region d:1-202 [84951] picpiclink
  10. N-(1-D-carboxylethyl)-L-norvaline dehydrogenase [51879]
    1. Arthrobacter, strain 1c [TaxId: 1663] [51880] (1)
      1. 1bg6 picpicxref
        1. region a:4-187 [30214] picpiclink
  11. Glycerol-3- phosphate dehydrogenase [51881]
    1. Trypanosome (Leishmania mexicana) [TaxId: 5665] [51882] (7)
      1. 1n1e picpicxref
        complexed with nde
        1. region a:9-197 [85257] picpiclink
        2. region b:9-197 [85259] picpiclink
      2. 1m66 picpicxref
        complexed with bcp, plm
        1. region a:9-197 [78690] picpiclink
      3. 1evy picpicxref
        complexed with mys
        1. region a:9-197 [30215] picpiclink
      4. 1jdj picpicxref
        complexed with cfp, mys
        1. region a:9-197 [71636] picpiclink
      5. 1evz picpicxref
        complexed with mys, nah
        1. region a:9-197 [30216] picpiclink
      6. 1n1g picpicxref
        complexed with bcp, plm
        1. region a:9-197 [91543] picpiclink
      7. 1m67 picpicxref
        complexed with boa, plm
        1. region a:9-197 [78692] picpiclink
    2. Archaeoglobus fulgidus [TaxId: 2234] [117433] (1)
      SQ O29390
      1. 1txg picpicxref
        complexed with gol, nh4, so4
        1. region a:1-180 [112776] picpiclink
        2. region b:1-180 [112778] picpiclink
  12. Ketopantoate reductase PanE [69419]
    1. Escherichia coli [TaxId: 562] [69420] (5)
      1. 1ks9 picpicxref
        1. region a:1-167 [68858] picpiclink
      2. 1yon picpicxref
        automatically matched to d1ks9a2
        complexed with apx
        1. region a:1-167 [123781] picpiclink
      3. 1yjq picpicxref
        automatically matched to d1ks9a2
        complexed with act, mpd, nap
        1. region a:1-167 [123460] picpiclink
      4. 2ofp picpicxrefxref
        automatically matched to d1ks9a2
        complexed with act, dio, nap, paf
        1. region a:1-167 [139053] picpiclink
      5. 2ofp picpicxrefxref
        automatically matched to d1ks9a2
        complexed with act, dio, nap, paf
        1. region b:1-167 [139055] picpiclink
  13. Coenzyme F420H2:NADP+ oxidoreductase (FNO) [69421]
    lacks all but the first helix of the C-terminal all-alpha domain
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [69422] (2)
      1. 1jay picpic
        complexed with f42, na, nap
        1. chain a [66478] picpiclink
        2. chain b [66479] picpiclink
      2. 1jax picpic
        complexed with mg, na
        1. chain a [66476] picpiclink
        2. chain b [66477] picpiclink
  14. Fatty oxidation complex alpha subunit, middle domain [110432]
    1. Pseudomonas fragi [TaxId: 296] [110433] (4)
      SQ P28793
      1. 1wdk picpicxrefxrefxref
        complexed with aco, hg, n8e, nad, zn
        1. region a:311-496 [109252] picpiclink
        2. region b:311-496 [109256] picpiclink
      2. 2d3t picpicxrefxrefxrefxrefxrefxref
        complexed with aco, nad
        1. region a:311-496 [131222] picpiclink
        2. region b:311-496 [131226] picpiclink
      3. 1wdl picpicxrefxrefxref
        complexed with aco, n8e, nad
        1. region a:311-496 [109264] picpiclink
        2. region b:311-496 [109268] picpiclink
      4. 1wdm picpicxrefxrefxref
        complexed with aco, nad, zn
        1. region a:311-496 [109276] picpiclink
        2. region b:311-496 [109280] picpiclink
  15. Pyrroline-5-carboxylate reductase ProC [117434]
    1. Neisseria meningitidis, serogroup B [TaxId: 487] [117435] (2)
      SQ Q9K1N1
      1. 1yqg picpicxref
        complexed with so4
        1. region a:1-152 [145921] picpiclink
      2. 2ag8 picpicxref
        automatically matched to 1YQG A:1-152
        complexed with nap
        1. region a:1-152 [146054] picpiclink
    2. Streptococcus pyogenes [TaxId: 1314] [141928] (10)
      SQ Q9A1S9 1-152
      1. 2amf picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with na, pro
        1. region a:1-152 [127010] picpiclink
      2. 2amf picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with na, pro
        1. region b:1-152 [127012] picpiclink
      3. 2amf picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with na, pro
        1. region c:1-152 [127014] picpiclink
      4. 2amf picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with na, pro
        1. region d:1-152 [127016] picpiclink
      5. 2amf picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with na, pro
        1. region e:1-152 [127018] picpiclink
      6. 2ahr picpicxrefxrefxrefxrefxref
        complexed with fmt, na, nap
        1. region a:1-152 [126776] picpiclink
      7. 2ahr picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with fmt, na, nap
        1. region b:1-152 [126778] picpiclink
      8. 2ahr picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with fmt, na, nap
        1. region c:1-152 [126780] picpiclink
      9. 2ahr picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with fmt, na, nap
        1. region d:1-152 [126782] picpiclink
      10. 2ahr picpicxrefxrefxrefxrefxref
        automatically matched to 2AHR A:1-152
        complexed with fmt, na, nap
        1. region e:1-152 [126784] picpiclink
  16. Prephenate dehydrogenase TyrA [141929]
    1. Aquifex aeolicus [TaxId: 63363] [141930] (4)
      SQ O67636 30-200
      1. 2g5c picpicxrefxrefxrefxref
        complexed with nad
        1. region a:30-200 [134647] picpiclink
      2. 2g5c picpicxrefxrefxrefxref
        automatically matched to 2G5C A:30-200
        complexed with nad
        1. region b:31-200 [134649] picpiclink
      3. 2g5c picpicxrefxrefxrefxref
        automatically matched to 2G5C A:30-200
        complexed with nad
        1. region c:30-200 [134651] picpiclink
      4. 2g5c picpicxrefxrefxrefxref
        automatically matched to 2G5C A:30-200
        complexed with nad
        1. region d:30-200 [134653] picpiclink
    2. Synechocystis sp. pcc 6803 [TaxId: 1148] [141931] (4)
      SQ P73906 1-165
      1. 2f1k picpicxrefxrefxrefxref
        complexed with nap, trs
        1. region a:1-165 [132773] picpiclink
      2. 2f1k picpicxrefxrefxrefxref
        automatically matched to 2F1K A:1-165
        complexed with nap, trs
        1. region b:1-165 [132775] picpiclink
      3. 2f1k picpicxrefxrefxrefxref
        automatically matched to 2F1K A:1-165
        complexed with nap, trs
        1. region c:1-165 [132777] picpiclink
      4. 2f1k picpicxrefxrefxrefxref
        automatically matched to 2F1K A:1-165
        complexed with nap, trs
        1. region d:1-165 [132779] picpiclink
    3. Haemophilus influenzae [TaxId: 727] [159425] (2)
      SQ P43902 92-243
      1. 2pv7 picpicxrefxref
        complexed with nad, tyr
        1. region a:92-243 [149888] picpiclink
      2. 2pv7 picpicxrefxref
        automatically matched to 2PV7 A:92-243
        complexed with nad, tyr
        1. region b:92-243 [149890] picpiclink
  17. 5,10-methenyltetrahydromethanopterin hydrogenase, HMD [141932]
    1. Archaeon Methanocaldococcus jannaschii [TaxId: 2190] [141933] (1)
      SQ Q58194 1-242
      1. 2b0j picpicxref
        1. region a:1-242 [127640] picpiclink
  18. Hypothetical protein TM1727 [159426]
    ProC structural homologue
    1. Thermotoga maritima [TaxId: 2336] [159427] (2)
      SQ Q9X250 2-154
      1. 2i76 picpicxrefxref
        complexed with ndp
        1. region a:2-154 [147536] picpiclink
      2. 2i76 picpicxrefxref
        automatically matched to 2I76 A:2-154
        complexed with ndp
        1. region b:2-154 [147538] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk