Structural Classification of Proteins

Superfamily: Aminoacid dehydrogenase-like, N-terminal domain

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Aminoacid dehydrogenase-like, N-terminal domain [53222]
core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
Superfamily: Aminoacid dehydrogenase-like, N-terminal domain [53223]
uperfamily

Families:

Aminoacid dehydrogenases [53224] (10)
dimerisation domain; contains additional structures including two extra N-terminal strands in the beta-sheet
1. Glutamate dehydrogenase [53225]
  1. Clostridium symbiosum [TaxId: 1512] [53226] (4)
    1. 1bgv
      1. region a:1-194 [33865]
    2. 1k89
      mutant
      1. region a:1-194 [33866]
    3. 1hrd
      1. region a:1-194 [33867]
      2. region b:1-194 [33868]
      3. region c:1-194 [33869]
    4. 1aup
      mutant
      1. region a:1-192 [33870]
  2. Archaeon Pyrococcus furiosus [TaxId: 2261] [53227] (1)
    1. 1gtm
      complexed with so4
      1. region a:3-180 [33871]
      2. region b:3-180 [33872]
      3. region c:3-180 [33873]
  3. Archaeon Thermococcus profundus [TaxId: 49899] [64106] (1)
    1. 1euz
      complexed with so4
      1. region a:4-180 [59514]
      2. region b:4-180 [59516]
      3. region c:4-180 [59518]
      4. region d:4-180 [59520]
      5. region e:4-180 [59522]
      6. region f:3-180 [59524]
  4. Archaeon Thermococcus litoralis [TaxId: 2265] [53228] (1)
    1. 1bvu
      1. region a:3-180 [33874]
      2. region b:3-180 [33875]
      3. region c:3-180 [33876]
      4. region d:3-180 [33877]
      5. region e:3-180 [33878]
      6. region f:3-180 [33879]
  5. Thermotoga maritima [TaxId: 2336] [53229] (3)
    1. 1b26
      1. region a:4-178 [33880]
      2. region b:4-178 [33881]
      3. region c:4-178 [33882]
      4. region d:4-178 [33883]
      5. region e:4-178 [33884]
      6. region f:4-178 [33885]
    2. 2tmg
      1. region a:4-178 [33886]
      2. region b:4-178 [33887]
      3. region c:4-178 [33888]
      4. region d:4-178 [33889]
      5. region e:4-178 [33890]
      6. region f:4-178 [33891]
    3. 1b3b
      1. region a:4-178 [33892]
      2. region b:4-178 [33893]
      3. region c:4-178 [33894]
      4. region d:4-178 [33895]
      5. region e:4-178 [33896]
      6. region f:4-178 [33897]
  6. Cow (Bos taurus) [TaxId: 9913] [53230] (5)
    1. 1hwx
      complexed with glu, gtp, nai
      1. region a:1-208 [33898]
      2. region b:1-208 [33899]
      3. region c:1-208 [33900]
      4. region d:1-208 [33901]
      5. region e:1-208 [33902]
      6. region f:1-208 [33903]
    2. 1nr7
      1. region a:6-208 [86096]
      2. region b:6-208 [86098]
      3. region c:6-208 [86100]
      4. region d:6-208 [86102]
      5. region e:6-208 [86104]
      6. region f:6-208 [86106]
      7. region g:6-208 [86108]
      8. region h:6-208 [86110]
      9. region i:6-208 [86112]
      10. region j:6-208 [86114]
      11. region k:6-208 [86116]
      12. region l:6-208 [86118]
    3. 1hwz
      complexed with glu, gtp, ndp
      1. region a:1-208 [33904]
      2. region b:1-208 [33905]
      3. region c:1-208 [33906]
      4. region d:1-208 [33907]
      5. region e:1-208 [33908]
      6. region f:1-208 [33909]
    4. 1hwy
      complexed with akg, nad, po4
      1. region a:1-208 [33910]
      2. region b:1-208 [33911]
      3. region c:1-208 [33912]
      4. region d:1-208 [33913]
      5. region e:1-208 [33914]
      6. region f:1-208 [33915]
    5. 1nqt
      complexed with adp
      1. region a:6-208 [86053]
      2. region b:6-208 [86055]
      3. region c:6-208 [86057]
      4. region d:6-208 [86059]
      5. region e:6-208 [86061]
      6. region f:6-208 [86063]
      7. region g:6-208 [86065]
      8. region h:6-208 [86067]
      9. region i:6-208 [86069]
      10. region j:6-208 [86071]
      11. region k:6-208 [86073]
      12. region l:6-208 [86075]
  7. Human (Homo sapiens) [TaxId: 9606] [75252] (2)
    1. 1l1f
      1. region a:10-212 [73457]
      2. region b:10-212 [73459]
      3. region c:10-212 [73461]
      4. region d:10-212 [73463]
      5. region e:10-212 [73465]
      6. region f:10-212 [73467]
    2. 1nr1
      mutant
      1. region a:10-212 [86081]
      2. region b:10-212 [86083]
      3. region c:10-212 [86085]
      4. region d:10-212 [86087]
      5. region e:10-212 [86089]
      6. region f:10-212 [86091]
  8. Pyrobaculum islandicum [TaxId: 2277] [117471] (1)
    SQ Q9Y8I4
    1. 1v9l
      complexed with nad
      1. region a:4-179 [113584]
      2. region b:4-179 [113586]
      3. region c:4-179 [113588]
      4. region d:4-179 [113590]
      5. region e:4-179 [113592]
      6. region f:4-179 [113594]
2. Leucine dehydrogenase [53231]
  1. Bacillus sphaericus [TaxId: 1421] [53232] (1)
    1. 1leh
      1. region a:1-134 [33916]
      2. region b:1-134 [33917]
3. Phenylalanine dehydrogenase [53233]
  1. Rhodococcus sp., M4 [TaxId: 1831] [53234] (4)
    1. 1c1d
      complexed with ioh, k, na, nad, phe, po4
      1. region a:1-148 [33918]
      2. region b:1-148 [33919]
    2. 1c1x
      complexed with ioh, k, lla, na, nad, po4
      1. region a:1-148 [33920]
      2. region b:1-148 [33921]
    3. 1bw9
      complexed with 1py, edo, ipa, k, na, nad, po4
      1. region a:1-148 [33922]
      2. region b:401-548 [33923]
    4. 1bxg
      complexed with hci, k, nad, po4
      1. region a:1-148 [33924]
      2. region b:401-548 [33925]
Tetrahydrofolate dehydrogenase/cyclohydrolase [53235] (3)
1. Tetrahydrofolate dehydrogenase/cyclohydrolase [53236]
  the two-domain organization is similar to that of aminoacid dehydrogenases, but both domains are truncated
  1. Human (Homo sapiens) [TaxId: 9606] [53237] (4)
    1. 1a4i
      complexed with ndp
      1. region a:2-126 [33926]
      2. region b:2-126 [33927]
    2. 1dig
      complexed with act, l37, nap
      1. region a:2-126 [33930]
      2. region b:1002-1126 [33931]
    3. 1dia
      complexed with l24, nap
      1. region a:2-126 [33928]
      2. region b:1002-1126 [33929]
    4. 1dib
      complexed with l34, nap
      1. region a:2-126 [33932]
      2. region b:1002-1126 [33933]
  2. Escherichia coli [TaxId: 562] [53238] (1)
    1. 1b0a
      1. region a:2-122 [33934]
  3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [53239] (2)
    1. 1edz
      1. region a:3-148 [33935]
    2. 1ee9
      complexed with nad
      1. region a:3-148 [33936]
Methylene-tetrahydromethanopterin dehydrogenase [82333] (1)
1. Methylene-tetrahydromethanopterin dehydrogenase [82334]
  1. Methylobacterium extorquens [TaxId: 408] [82335] (2)
    1. 1lua
      complexed with nap
      1. region a:2-97 [78217]
      2. region b:2-97 [78219]
      3. region c:2-97 [78221]
    2. 1lu9
      1. region a:2-97 [78211]
      2. region b:2-97 [78213]
      3. region c:2-97 [78215]
Shikimate dehydrogenase-like [82336] (5)
1. Putative shikimate dehydrogenase YdiB [82337]
  1. Escherichia coli [TaxId: 562] [82338] (3)
    1. 1vi2
      structural genomics
      complexed with nad, so4
      1. region a:5-106 [100727]
      2. region b:6-106 [100729]
    2. 1npd
      structural genomics
      complexed with mse, nad
      1. region a:1-106 [80682]
      2. region b:1-106 [80684]
    3. 1o9b
      complexed with mse, nad, po4
      1. region a:7-106 [81238]
      2. region b:7-106 [81240]
2. Shikimate 5-dehydrogenase-like protein HI0607 [89582]
  1. Haemophilus influenzae [TaxId: 727] [89583] (1)
    1. 1npy
      structural genomics
      complexed with ace
      1. region a:1-102 [85996]
      2. region b:1-102 [85998]
      3. region c:1-102 [86000]
      4. region d:1-102 [86002]
3. Shikimate 5-dehydrogenase AroE [89584]
  1. Escherichia coli [TaxId: 562] [89585] (1)
    1. 1nyt
      complexed with dtt, nap, so4
      1. region a:1-101 [86418]
      2. region b:1-101 [86420]
      3. region c:1-101 [86422]
      4. region d:1-101 [86424]
  2. Haemophilus influenzae [TaxId: 727] [102224] (2)
    1. 1p77
      complexed with act, atr
      1. region a:1-101 [94215]
    2. 1p74
      1. region a:1-101 [94207]
      2. region b:1-101 [94209]
  3. Archaeon Methanococcus jannaschii [TaxId: 2190] [89586] (1)
    MJ1084
    1. 1nvt
      structural genomics
      complexed with nap, zn
      1. region a:1-110 [86271]
      2. region b:1-110 [86273]
Malic enzyme N-domain [53240] (4)
Pfam 00390; decorated with additional structures; includes N-terminal additional subdomains and extra N-terminal strand
1. Mitochondrial NAD(P)-dependent malic enzyme [53241]
  1. Human (Homo sapiens) [TaxId: 9606] [53242] (10)
    1. 1pj3
      complexed with fum, mn, nad, pyr
      1. region a:21-279 [94727]
      2. region b:1021-1279 [94729]
      3. region c:2021-2279 [94731]
      4. region d:3021-3279 [94733]
    2. 1gz3
      complexed with atp, fum, mn, oxl; mutant
      1. region a:20-279 [83394]
      2. region b:20-279 [83396]
      3. region c:20-279 [83398]
      4. region d:20-279 [83400]
    3. 1gz4
      complexed with atp, fum, mn, mse, ttn
      1. region a:23-279 [70795]
      2. region b:23-279 [70797]
      3. region c:23-279 [70799]
      4. region d:23-279 [70801]
    4. 1pj2
      complexed with fum, mlt, mn, nai
      1. region a:21-279 [94719]
      2. region b:1021-1279 [94721]
      3. region c:2021-2279 [94723]
      4. region d:3021-3279 [94725]
    5. 1pj4
      complexed with atp, fum, mlt, mn
      1. region a:22-279 [94735]
      2. region b:1022-1279 [94737]
      3. region c:2022-2279 [94739]
      4. region d:3022-3279 [94741]
    6. 1do8
      complexed with mn, nad, oxl; mutant
      1. region a:21-279 [33937]
      2. region b:21-279 [33938]
      3. region c:21-279 [33939]
      4. region d:21-279 [33940]
    7. 1qr6
      complexed with nad; mutant
      1. region a:23-279 [33941]
      2. region b:1023-1279 [33942]
    8. 1efl
      complexed with mg, nad, ttn
      1. region a:21-279 [33943]
      2. region b:21-279 [33944]
      3. region c:21-279 [33945]
      4. region d:21-279 [33946]
    9. 1efk
      complexed with mak, mo1, nad
      1. region a:21-279 [33947]
      2. region b:21-279 [33948]
      3. region c:21-279 [33949]
      4. region d:21-279 [33950]
    10. 1pjl
      complexed with lu, mse, nad
      1. region a:23-279 [88124]
      2. region b:1023-1279 [88126]
      3. region c:2023-2279 [88128]
      4. region d:3023-3279 [88130]
      5. region e:4023-4279 [88132]
      6. region f:5023-5279 [88134]
      7. region g:6023-6279 [88136]
      8. region h:7023-7279 [88138]
  2. Domestic pigeon (Columba livia) [TaxId: 8932] [75253] (1)
    1. 1gq2
      complexed with cl, mn, mse, na, nap, oxl
      1. region a:23-279 [70309]
      2. region b:23-279 [70311]
      3. region c:23-279 [70313]
      4. region d:23-279 [70315]
      5. region e:23-279 [70317]
      6. region f:23-279 [70319]
      7. region g:23-279 [70321]
      8. region h:23-279 [70323]
      9. region i:23-279 [70325]
      10. region j:23-279 [70327]
      11. region k:23-279 [70329]
      12. region l:23-279 [70331]
      13. region m:23-279 [70333]
      14. region n:23-279 [70335]
      15. region o:23-279 [70337]
      16. region p:23-279 [70339]
  3. Pig roundworm (Ascaris suum) [TaxId: 6253] [75254] (2)
    1. 1o0s
      complexed with nai, ttn
      1. region a:2-295 [86541]
      2. region b:2-295 [86543]
    2. 1llq
      complexed with nad
      1. region a:2-295 [74009]
      2. region b:2-295 [74011]
2. Malate oxidoreductase (malic enzyme) [110452]
  1. Thermotoga maritima [TaxId: 2336] [110453] (5)
    SQ Q9WZ12
    1. 1vl6
      Structural genomics target
      1. region a:1-154 [108725]
      2. region b:1-154 [108727]
      3. region c:1-154 [108729]
      4. region d:1-154 [108731]
    2. 2hae
      automatically matched to d1vl6a2
      complexed with nad, zn
      1. region a:2-154 [136279]
    3. 2hae
      automatically matched to d1vl6a2
      complexed with nad, zn
      1. region b:2-154 [136281]
    4. 2hae
      automatically matched to d1vl6a2
      complexed with nad, zn
      1. region c:2-154 [136283]
    5. 2hae
      automatically matched to d1vl6a2
      complexed with nad, zn
      1. region d:2-154 [136285]