Structural Classification of Proteins
home mail help root up expand collapse

Family: NodB-like polysaccharide deacetylase

variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: 7-stranded beta/alpha barrel [51988]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
  4. Superfamily: Glycoside hydrolase/deacetylase [88713]
    in the different families beta-barrels are similarly distorted but may vary in the number of strands
    link to SUPERFAMILY database - Superfamily
  5. Family: NodB-like polysaccharide deacetylase [89559]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

Protein Domains:

  1. Probable polysaccharide deacetylase PdaA [89560]
    1. Bacillus subtilis [TaxId: 1423] [89561] (7)
      1. 1ny1 picpic
        structural genomics; target SR127
        complexed with mse
        1. chain a [86395] picpiclink
        2. chain b [86396] picpiclink
      2. 1w17 picpic
        automatically matched to d1ny1a_
        1. region a:24-258 [120573] picpiclink
      3. 1w17 picpic
        automatically matched to d1ny1a_
        1. region b:24-258 [120574] picpiclink
      4. 1w1b picpic
        automatically matched to d1ny1a_
        complexed with cd
        1. region 1:24-258 [120577] picpiclink
      5. 1w1b picpic
        automatically matched to d1ny1a_
        complexed with cd
        1. region 2:24-258 [120578] picpiclink
      6. 1w1a picpic
        automatically matched to d1ny1a_
        complexed with cd, gol, ndg
        1. region 1:24-258 [120575] picpiclink
      7. 1w1a picpic
        automatically matched to d1ny1a_
        complexed with cd, gol, ndg
        1. region 2:24-258 [120576] picpiclink
  2. Chitin deacetylase [141953]
    1. Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576] [141954] (1)
      SQ Q6DWK3 29-248
      1. 2iw0 picpic
        complexed with act, cl, po4, zn
        1. region a:29-248 [137737] picpiclink
  3. Xylanase XynA C-terminal domain [141955]
    1. Clostridium thermocellum [TaxId: 1515] [141956] (2)
      SQ O87119 480-683
      1. 2c71 picpic
        complexed with mg
        1. region a:480-683 [130017] picpiclink
      2. 2c79 picpic
        automatically matched to 2C71 A:480-683
        complexed with co
        1. region a:480-683 [130040] picpiclink
  4. Putative polysaccharide deacetylase BA0424 [141957]
    1. Bacillus anthracis [TaxId: 1392] [141958] (1)
      SQ Q81Z49 54-258
      1. 2j13 picpic
        complexed with act, cac, zn
        1. region a:1-235 [137934] picpiclink
  5. Peptidoglycan GlcNAc deacetylase C-terminal domain [141959]
    1. Streptococcus pneumoniae [TaxId: 1313] [141960] (2)
      SQ Q8DP63 268-463
      1. 2c1i picpicxref
        complexed with mes, so4, zn; mutant
        1. region a:268-463 [129636] picpiclink
      2. 2c1g picpicxref
        complexed with act, peg, zn
        1. region a:268-463 [129632] picpiclink
  6. Acetyl-xylan esterase [141961]
    1. Streptomyces lividans [TaxId: 1916] [141962] (2)
      SQ Q54413 42-233
      1. 2cc0 picpic
        complexed with act, zn
        1. region a:1-192 [130209] picpiclink
      2. 2cc0 picpic
        automatically matched to 2CC0 A:1-192
        complexed with act, zn
        1. region b:2-192 [130210] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk