Structural Classification of Proteins
home mail help root up expand collapse

Protein: Probable polysaccharide deacetylase PdaA from Bacillus subtilis [TaxId: 1423]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: 7-stranded beta/alpha barrel [51988]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
  4. Superfamily: Glycoside hydrolase/deacetylase [88713]
    in the different families beta-barrels are similarly distorted but may vary in the number of strands
    link to SUPERFAMILY database - Superfamily
  5. Family: NodB-like polysaccharide deacetylase [89559]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456
  6. Protein: Probable polysaccharide deacetylase PdaA [89560]
  7. Species: Bacillus subtilis [TaxId: 1423] [89561]

PDB Entry Domains:

  1. 1ny1 picpic
    structural genomics; target SR127
    complexed with mse
    1. chain a [86395] picpiclink
    2. chain b [86396] picpiclink
  2. 1w17 picpic
    automatically matched to d1ny1a_
    1. region a:24-258 [120573] picpiclink
  3. 1w17 picpic
    automatically matched to d1ny1a_
    1. region b:24-258 [120574] picpiclink
  4. 1w1b picpic
    automatically matched to d1ny1a_
    complexed with cd
    1. region 1:24-258 [120577] picpiclink
  5. 1w1b picpic
    automatically matched to d1ny1a_
    complexed with cd
    1. region 2:24-258 [120578] picpiclink
  6. 1w1a picpic
    automatically matched to d1ny1a_
    complexed with cd, gol, ndg
    1. region 1:24-258 [120575] picpiclink
  7. 1w1a picpic
    automatically matched to d1ny1a_
    complexed with cd, gol, ndg
    1. region 2:24-258 [120576] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk