Structural Classification of Proteins
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Family: NodB-like polysaccharide deacetylase

variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: 7-stranded beta/alpha barrel [51988]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands
  4. Superfamily: Glycoside hydrolase/deacetylase [88713]
    in the different families beta-barrels are similarly distorted but may vary in the number of strands
    link to SUPERFAMILY database - Superfamily
  5. Family: NodB-like polysaccharide deacetylase [89559]
    variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

Protein Domains:

  1. Probable polysaccharide deacetylase PdaA [89560]
    1. Bacillus subtilis [TaxId: 1423] [89561] (7) picpic
  2. Chitin deacetylase [141953]
    1. Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576] [141954] (1) picpic
      SQ Q6DWK3 29-248
  3. Xylanase XynA C-terminal domain [141955]
    1. Clostridium thermocellum [TaxId: 1515] [141956] (2) picpic
      SQ O87119 480-683
  4. Putative polysaccharide deacetylase BA0424 [141957]
    1. Bacillus anthracis [TaxId: 1392] [141958] (1) picpic
      SQ Q81Z49 54-258
  5. Peptidoglycan GlcNAc deacetylase C-terminal domain [141959]
    1. Streptococcus pneumoniae [TaxId: 1313] [141960] (2) picpic
      SQ Q8DP63 268-463
  6. Acetyl-xylan esterase [141961]
    1. Streptomyces lividans [TaxId: 1916] [141962] (2) picpic
      SQ Q54413 42-233
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk