Structural Classification of Proteins
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Protein: HIV RNase H (Domain of reverse transcriptase) from Human immunodeficiency virus type 1 [TaxId: 11676]

SQ P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! SQ P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! SQ P04585 158-698 # chain A coverage; chain B is shorter: 159-595

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: Ribonuclease H [53099]
  6. Protein: HIV RNase H (Domain of reverse transcriptase) [53105]
  7. Species: Human immunodeficiency virus type 1 [TaxId: 11676] [53106]
    SQ P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! SQ P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! SQ P04585 158-698 # chain A coverage; chain B is shorter: 159-595

PDB Entry Domains:

  1. 1vrt picpicxrefxref
    complexed with cya, mg, nev
    1. region a:430-539 [33574] picpiclink
  2. 1s1t picpicxref
    complexed with po4, uc1; mutant
    1. region a:430-539 [105205] picpiclink
  3. 1c1b picpicxrefxref
    complexed with gca
    1. region a:430-543 [33605] picpiclink
  4. 1vru picpicxrefxref
    complexed with aap, cya
    1. region a:430-539 [33575] picpiclink
  5. 1jla picpicxrefxref
    complexed with tnk; mutant
    1. region a:430-553 [66833] picpiclink
  6. 1rt1 picpicxref
    complexed with mkc
    1. region a:430-539 [33579] picpiclink
  7. 1rth picpicxref
    complexed with cya, u05
    1. region a:430-543 [33576] picpiclink
  8. 1eet picpicxrefxref
    complexed with bfu; mutant
    1. region a:430-557 [33608] picpiclink
  9. 1jkh picpicxrefxref
    complexed with efz; mutant
    1. region a:430-554 [66797] picpiclink
  10. 1ikx picpicxrefxref
    complexed with pnu; mutant
    1. region a:430-557 [62533] picpiclink
  11. 1c0u picpicxrefxref
    complexed with bm5
    1. region a:430-539 [33610] picpiclink
  12. 1hrh picpic
    1. region a:432-556 [33577] picpiclink
    2. region b:432-554 [33578] picpiclink
  13. 1rt2 picpicxrefxref
    complexed with tnk
    1. region a:430-543 [33580] picpiclink
  14. 1tkt picpicxref
    complexed with h12, mg, po4
    1. region a:430-537 [112482] picpiclink
  15. 1rev picpicxrefxref
    complexed with mg, trb
    1. region a:430-539 [33582] picpiclink
  16. 1c0t picpicxrefxref
    complexed with bm1
    1. region a:430-539 [33606] picpiclink
  17. 1fk9 picpicxrefxref
    complexed with efz
    1. region a:430-539 [33607] picpiclink
  18. 1klm picpicxrefxref
    complexed with spp
    1. region a:430-539 [33583] picpiclink
  19. 1c1c picpicxrefxref
    complexed with 612
    1. region a:430-539 [33609] picpiclink
  20. 1lwc picpicxrefxref
    complexed with csd, nvp, po4; mutant
    1. region a:430-537 [78262] picpiclink
  21. 1s1w picpicxref
    complexed with uc1; mutant
    1. region a:430-539 [105214] picpiclink
  22. 1jlg picpicxrefxref
    complexed with uc1; mutant
    1. region a:430-539 [66848] picpiclink
  23. 1s1v picpicxref
    complexed with tnk; mutant
    1. region a:430-539 [105211] picpiclink
  24. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
    complexed with mg
    1. region a:430-554 [33587] picpiclink
  25. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
    duplicate of 1HMV A:430-554
    complexed with mg
    1. region c:430-554 [118502] picpiclink
  26. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
    duplicate of 1HMV A:430-554
    complexed with mg
    1. region e:430-554 [118505] picpiclink
  27. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
    duplicate of 1HMV A:430-554
    complexed with mg
    1. region g:430-554 [118508] picpiclink
  28. 1rtj picpicxref
    complexed with cya
    1. region a:430-543 [33581] picpiclink
  29. 1tkx picpicxref
    complexed with gwb
    1. region a:430-537 [112485] picpiclink
  30. 1ep4 picpicxrefxref
    complexed with s11
    1. region a:430-539 [33614] picpiclink
  31. 1lwe picpicxrefxref
    complexed with csd, nvp, po4; mutant
    1. region a:430-554 [78267] picpiclink
  32. 1dtt picpicxrefxref
    complexed with ftc
    1. region a:430-543 [33611] picpiclink
  33. 1tl3 picpicxref
    complexed with h20, po4
    1. region a:430-537 [112496] picpiclink
  34. 1tkz picpicxref
    complexed with h16, po4
    1. region a:430-537 [112490] picpiclink
  35. 1jlf picpicxrefxref
    complexed with nvp; mutant
    1. region a:430-539 [66845] picpiclink
  36. 1iky picpicxrefxref
    complexed with msd; mutant
    1. region a:430-557 [62536] picpiclink
  37. 1ikw picpicxrefxref
    complexed with efz; mutant
    1. region a:430-557 [62530] picpiclink
  38. 1fko picpicxrefxref
    complexed with efz; mutant
    1. region a:430-543 [33612] picpiclink
  39. 1rt6 picpicxref
    complexed with po4, uc3
    1. region a:430-539 [33613] picpiclink
  40. 1rt5 picpicxrefxref
    complexed with po4, uc2
    1. region a:430-542 [33615] picpiclink
  41. 1rt4 picpicxrefxref
    complexed with po4, uc1
    1. region a:430-542 [33618] picpiclink
  42. 1rti picpicxref
    complexed with cya, hef
    1. region a:430-543 [33585] picpiclink
  43. 1lwf picpicxrefxref
    complexed with csd, nvp; mutant
    1. region a:430-554 [78270] picpiclink
  44. 1jlb picpicxrefxref
    complexed with nvp; mutant
    1. region a:430-554 [66836] picpiclink
  45. 1lw0 picpicxrefxref
    complexed with csd, nvp, po4; mutant
    1. region a:430-537 [78248] picpiclink
  46. 1dlo picpicxrefxref
    mutant
    1. region a:430-556 [33584] picpiclink
  47. 1s1x picpicxref
    complexed with nvp; mutant
    1. region a:430-539 [105217] picpiclink
  48. 1dtq picpicxrefxref
    complexed with fpt
    1. region a:430-539 [33616] picpiclink
  49. 1fkp picpicxrefxref
    complexed with nvp; mutant
    1. region a:430-542 [33617] picpiclink
  50. 1tl1 picpicxref
    complexed with h18, po4
    1. region a:430-537 [112493] picpiclink
  51. 1tv6 picpicxref
    complexed with cp9
    1. region a:430-539 [107347] picpiclink
  52. 1jlq picpicxrefxref
    complexed with sbn
    1. region a:430-540 [63173] picpiclink
  53. 1lw2 picpicxrefxref
    complexed with csd, po4, u05; mutant
    1. region a:430-539 [78251] picpiclink
  54. 1s9e picpicxrefxref
    complexed with adb; mutant
    1. region a:430-552 [98752] picpiclink
  55. 1r0a picpicxrefxrefxrefxrefxref
    complexed with 2da, glc, gol, mg
    1. region a:430-558 [104676] picpiclink
  56. 1ikv picpicxrefxref
    complexed with efz; mutant
    1. region a:430-557 [62527] picpiclink
  57. 1rt3 picpicxrefxref
    complexed with u05; mutant
    1. region a:430-537 [33590] picpiclink
  58. 1jlc picpicxrefxref
    complexed with ftc; mutant
    1. region a:430-547 [66839] picpiclink
  59. 1hqe picpicxrefxref
    mutant
    1. region a:430-554 [61130] picpiclink
  60. 1s9g picpicxrefxref
    complexed with abz; mutant
    1. region a:430-543 [98755] picpiclink
  61. 1s1u picpicxref
    complexed with nvp; mutant
    1. region a:430-539 [105208] picpiclink
  62. 1rt7 picpicxref
    complexed with po4, uc4
    1. region a:430-539 [33619] picpiclink
  63. 1hni picpicxrefxref
    complexed with aaa; mutant
    1. region a:430-558 [33586] picpiclink
  64. 1rtd picpicxrefxref
    complexed with mg, ttp; mutant
    1. region a:430-554 [33591] picpiclink
    2. region c:430-554 [33592] picpiclink
  65. 1jle picpicxrefxref
    mutant
    1. region a:430-549 [66842] picpiclink
  66. 1rdh picpic
    CA-atoms only
    1. region a:432-556 [33588] picpiclink
    2. region b:432-556 [33589] picpiclink
  67. 1hqu picpicxrefxref
    complexed with hby; mutant
    1. region a:430-556 [61157] picpiclink
  68. 1qe1 picpicxrefxref
    mutant
    1. region a:430-556 [33593] picpiclink
  69. 1s6q picpicxrefxref
    complexed with tpb; mutant
    1. region a:430-552 [98601] picpiclink
  70. 1hpz picpicxrefxref
    complexed with aap; mutant
    1. region a:430-556 [61119] picpiclink
  71. 1t03 picpicxrefxrefxrefxrefxrefxref
    complexed with mg, mrg, tfo; mutant
    1. region a:430-558 [99053] picpiclink
  72. 1sv5 picpicxrefxref
    complexed with 65b; mutant
    1. region a:430-552 [99016] picpiclink
  73. 2hmi picpicxrefxrefxrefxrefxrefxref
    protein/protein/DNA complex; mutant
    1. region a:430-558 [33604] picpiclink
  74. 1hnv picpicxrefxref
    complexed with tbo; mutant
    1. region a:430-558 [33594] picpiclink
  75. 1s6p picpicxrefxref
    complexed with iet, mg; mutant
    1. region a:430-552 [98598] picpiclink
  76. 1suq picpicxrefxref
    complexed with 185, mg; mutant
    1. region a:430-552 [99003] picpiclink
  77. 1n6q picpicxrefxrefxrefxrefxrefxref
    complexed with atm, mg, mrg; mutant
    1. region a:430-558 [80204] picpiclink
  78. 1t05 picpicxrefxref
    complexed with ddg, gol, mg, mrg, tnv; mutant
    1. region a:430-554 [99060] picpiclink
  79. 1n5y picpicxrefxrefxrefxrefxrefxref
    complexed with atm, mg, mrg; mutant
    1. region a:430-558 [80057] picpiclink
  80. 1uwb picpicxrefxref
    complexed with tbo; mutant
    1. region a:430-558 [33596] picpiclink
  81. 1bqm picpicxrefxref
    complexed with hby; mutant
    1. region a:430-556 [33597] picpiclink
  82. 1tvr picpicxrefxref
    complexed with tb9; mutant
    1. region a:430-558 [33595] picpiclink
  83. 1hys picpicxrefxrefxrefxrefxrefxref
    mutant
    1. region a:430-553 [61417] picpiclink
  84. 1bqn picpicxrefxref
    complexed with hby; mutant
    1. region a:430-558 [33599] picpiclink
  85. 3hvt picpicxrefxref
    complexed with nev
    1. region a:430-556 [33598] picpiclink
  86. 1j5o picpicxrefxrefxrefxrefxrefxref
    mutant
    1. region a:430-558 [71568] picpiclink
  87. 1hvu picpicxrefxref
    protein/RNA complex
    1. region a:430-554 [33600] picpiclink
    2. region d:430-554 [33601] picpiclink
    3. region g:430-554 [33602] picpiclink
    4. region j:430-554 [33603] picpiclink
  88. 1o1w picpic
    RNase H domain only
    1. chain a [81078] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk