Structural Classification of Proteins
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Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 6 [TaxId: 10090]

SQ NA # part of Fab 28 against HIV-1 RT

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 6 [TaxId: 10090] [88556]
    SQ NA # part of Fab 28 against HIV-1 RT

PDB Entry Domains:

  1. 1etz picpicxrefxrefxref
    part of anti-sweetener Fab NC10.14
    complexed with gas
    1. region h:1-126 [20479] picpiclink
    2. region b:1-126 [20481] picpiclink
  2. 1ggb picpicxrefxrefxref
    part of Fab 50.1
    1. region h:1-112 [19875] picpiclink
  3. 1ggc picpicxrefxrefxref
    part of Fab 50.1
    1. region h:1-112 [19881] picpiclink
  4. 1ggi picpicxrefxrefxref
    part of Fab 50.1
    1. region h:1-112 [19877] picpiclink
    2. region j:1-112 [19879] picpiclink
  5. 1jrh picpicxrefxrefxrefxref
    part of Fab A6
    mutant
    1. region h:1-113 [20223] picpiclink
  6. 1r0a picpicxrefxrefxrefxrefxref
    complexed with 2da, glc, gol, mg
    1. region h:1-123 [104679] picpiclink
  7. 1t03 picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    complexed with mg, mrg, tfo; mutant
    1. region h:1-123 [99056] picpiclink
  8. 2hmi picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    protein/protein/DNA complex; mutant
    1. region d:1-123 [20275] picpiclink
  9. 1n6q picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    complexed with atm, mg, mrg; mutant
    1. region h:1-123 [80207] picpiclink
  10. 1n5y picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    complexed with atm, mg, mrg; mutant
    1. region h:1-123 [80060] picpiclink
  11. 1hys picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    mutant
    1. region d:1-123 [61422] picpiclink
  12. 1j5o picpicxrefxrefxrefxrefxrefxref
    part of Fab 28 against HIV-1 RT
    mutant
    1. region h:1-123 [71571] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk