Structural Classification of Proteins

Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Lesion bypass DNA polymerase (Y-family), little finger domain [100878]
beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology
Superfamily: Lesion bypass DNA polymerase (Y-family), little finger domain [100879]
uperfamily

Families:

Lesion bypass DNA polymerase (Y-family), little finger domain [100880] (7)
1. DinB homolog (DBH) [100881]
  1. Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287] [100882] (62)
    1. 1jx4
      complexed with adi, ca, mg
      1. region a:241-341 [90378]
    2. 1s9f
      automatically matched to d1n48a1
      complexed with ca, ddy, mg
      1. region a:241-341 [118913]
    3. 1s9f
      automatically matched to d1n48a1
      complexed with ca, ddy, mg
      1. region b:241-341 [118915]
    4. 1s9f
      automatically matched to d1n48a1
      complexed with ca, ddy, mg
      1. region c:241-341 [118917]
    5. 1s9f
      automatically matched to d1n48a1
      complexed with ca, ddy, mg
      1. region d:241-341 [118919]
    6. 2jej
      automatically matched to d1n48a1
      complexed with bzg, ca, dgt
      1. region a:241-341 [138284]
    7. 1rys
      complexed with atp, ca, edo, na
      1. region a:241-341 [98111]
      2. region b:241-341 [98113]
    8. 2asd
      automatically matched to d1n48a1
      complexed with 8og, ca, dcp, ddg
      1. region a:241-341 [127248]
    9. 2asd
      automatically matched to d1n48a1
      complexed with 8og, ca, dcp, ddg
      1. region b:1241-1341 [127250]
    10. 2rdi
      automatically matched to d1n48a1
      complexed with gol, peg
      1. region a:241-341 [151928]
    11. 1s10
      complexed with ca, dcp
      1. region a:241-341 [98327]
    12. 1s0o
      complexed with ca, mg, ttp
      1. region a:241-341 [98296]
      2. region b:241-341 [98298]
    13. 2imw
      automatically matched to d1n48a1
      complexed with ca, dad, edo
      1. region p:241-341 [137519]
    14. 2agq
      automatically matched to d1n48a1
      complexed with ca, doc, dtp, mg
      1. region a:241-341 [126735]
    15. 2bq3
      automatically matched to d1n48a1
      complexed with ca, gne
      1. region a:241-341 [128959]
    16. 2uvv
      automatically matched to d1n48a1
      complexed with 8og, ca, dgt; mutant
      1. region a:241-342 [139984]
    17. 2br0
      automatically matched to d1n48a1
      complexed with ca, dg3, gne
      1. region a:241-341 [128973]
    18. 1jxl
      complexed with bro, ca, dg3, edo, mg
      1. region a:241-341 [90380]
    19. 1n48
      complexed with 3dr, atp, ca
      1. region a:241-342 [91615]
    20. 2uvw
      automatically matched to d1n48a1
      complexed with 8og, ca, dgt; mutant
      1. region a:241-342 [139986]
    21. 2rdj
      automatically matched to d1n48a1
      complexed with ca, gol, tmp
      1. region a:241-341 [151930]
    22. 2rdj
      automatically matched to d1n48a1
      complexed with ca, gol, tmp
      1. region b:241-341 [151932]
    23. 2jef
      automatically matched to d1n48a1
      complexed with bzg, ca, dgt, doc
      1. region a:241-341 [138278]
    24. 2c28
      automatically matched to d1n48a1
      complexed with 8og, ca, dg3
      1. region a:241-341 [129660]
    25. 2jeg
      automatically matched to d1n48a1
      complexed with bzg, ca, dgt, doc
      1. region a:241-341 [138280]
    26. 2ibk
      automatically matched to d1n48a1
      complexed with bap, ca, edo, gol, pop
      1. region a:241-341 [147598]
    27. 1ryr
      complexed with atp, ca
      1. region a:241-341 [98109]
    28. 2bqr
      automatically matched to d1n48a1
      complexed with ca, dtp, gne
      1. region a:241-341 [128965]
    29. 1s97
      complexed with ca, dct
      1. region a:241-341 [98742]
      2. region b:241-341 [98744]
      3. region c:241-341 [98746]
      4. region d:241-341 [98748]
    30. 2j6u
      automatically matched to d1n48a1
      complexed with 6og, ca, dgt
      1. region a:244-344 [138093]
    31. 1n56
      complexed with 3dr, atp, ca, mg
      1. region a:241-341 [91680]
      2. region b:241-341 [91682]
    32. 2r8i
      automatically matched to d1n48a1
      complexed with ca, dtp, p; mutant
      1. region a:241-341 [151721]
    33. 2bqu
      automatically matched to d1n48a1
      complexed with ca, dad, gne
      1. region a:241-341 [128967]
    34. 2jei
      automatically matched to d1n48a1
      complexed with bzg, ca, dgt
      1. region a:241-341 [138282]
    35. 1s0m
      complexed with atp, bpa, ca, mg
      1. region a:241-341 [98290]
      2. region b:241-341 [98292]
    36. 2r8h
      automatically matched to d1n48a1
      complexed with ca, dgt, p; mutant
      1. region a:241-341 [151719]
    37. 2j6s
      automatically matched to d1n48a1
      complexed with 6og, ca, dtp
      1. region a:241-342 [138089]
    38. 2c22
      automatically matched to d1n48a1
      complexed with 8og, ca, dgt
      1. region a:241-341 [129655]
    39. 2agp
      automatically matched to d1n48a1
      complexed with ca, dgt, doc, mg
      1. region a:241-341 [126731]
    40. 2agp
      automatically matched to d1n48a1
      complexed with ca, dgt, doc, mg
      1. region b:241-341 [126733]
    41. 2j6t
      automatically matched to d1n48a1
      complexed with 6og, ca, dtp
      1. region a:241-341 [138091]
    42. 2r8g
      automatically matched to d1n48a1
      complexed with ca, dgt, p; mutant
      1. region a:241-341 [151717]
    43. 2ago
      automatically matched to d1n48a1
      complexed with ca, mg, pop
      1. region a:241-341 [126729]
    44. 2asj
      automatically matched to d1n48a1
      complexed with ca, ddg
      1. region a:241-341 [127254]
    45. 2asj
      automatically matched to d1n48a1
      complexed with ca, ddg
      1. region b:1241-1341 [127256]
    46. 2c2d
      automatically matched to d1n48a1
      complexed with 8og, ca, dtp
      1. region a:241-341 [129664]
    47. 2uvu
      automatically matched to d1n48a1
      complexed with 8og, ca, dgt; mutant
      1. region a:241-342 [139982]
    48. 1s0n
      complexed with ca, dcp
      1. region a:241-341 [98294]
    49. 2va2
      automatically matched to d1n48a1
      complexed with ca, dct, dft
      1. region a:241-342 [152815]
    50. 2va2
      automatically matched to d1n48a1
      complexed with ca, dct, dft
      1. region b:241-342 [152817]
    51. 2asl
      automatically matched to d1n48a1
      complexed with 8og, ca, doc
      1. region a:241-341 [127258]
    52. 2asl
      automatically matched to d1n48a1
      complexed with 8og, ca, doc
      1. region b:1241-1341 [127260]
    53. 2atl
      automatically matched to d1n48a1
      complexed with ca, dcp, ddg
      1. region a:241-341 [127296]
    54. 2atl
      automatically matched to d1n48a1
      complexed with ca, dcp, ddg
      1. region b:1241-1341 [127298]
    55. 2c2r
      automatically matched to d1n48a1
      complexed with 8og, ca, dct, doc
      1. region a:241-341 [129680]
    56. 2uvr
      automatically matched to d1n48a1
      complexed with 8og, ca, dgt; mutant
      1. region a:241-342 [139980]
    57. 2va3
      automatically matched to d1n48a1
      complexed with ca, dft, dgt
      1. region a:241-342 [152819]
    58. 2c2e
      automatically matched to d1n48a1
      complexed with 8og, ca, dcp
      1. region a:241-341 [129666]
    59. 2v9w
      automatically matched to d1n48a1
      complexed with ca, dct, dft
      1. region a:241-342 [152811]
    60. 2v9w
      automatically matched to d1n48a1
      complexed with ca, dct, dft
      1. region b:241-342 [152813]
    61. 2au0
      automatically matched to d1n48a1
      complexed with ca, ddg
      1. region a:241-341 [127318]
    62. 2au0
      automatically matched to d1n48a1
      complexed with ca, ddg
      1. region b:1241-1341 [127320]
  2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [100883] (2)
    1. 1k1s
      mutant
      1. region a:240-344 [90386]
    2. 1k1q
      mutant
      1. region a:240-344 [90382]
      2. region b:240-344 [90384]
  3. Sulfolobus acidocaldarius Brock et al. 1972 (Sulfolobus acidocaldarius) [TaxId: 2285] [160394] (3)
    1. 3bq1
      automatically matched to d1k1qa1
      complexed with ca, dg3
      1. region a:240-344 [155493]
    2. 3bq0
      automatically matched to d1k1qa1
      complexed with ca
      1. region a:240-344 [155491]
    3. 3bq2
      automatically matched to d1k1qa1
      complexed with ca
      1. region a:240-344 [155495]
2. DNA polymerase eta [100884]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [100885] (5)
    1. 1jih
      1. region a:390-509 [90374]
      2. region b:390-509 [90376]
    2. 2r8j
      automatically matched to d1jiha1
      complexed with ca, cpt, dcp
      1. region a:390-509 [151723]
    3. 2r8j
      automatically matched to d1jiha1
      complexed with ca, cpt, dcp
      1. region b:390-509 [151725]
    4. 2r8k
      automatically matched to d1jiha1
      complexed with 2oa, ca, cpt
      1. region a:390-509 [151727]
    5. 2r8k
      automatically matched to d1jiha1
      complexed with 2oa, ca, cpt
      1. region b:390-509 [151729]
3. DNA polymerase IV [103036]
  1. Escherichia coli [TaxId: 562] [103037] (1)
    1. 1unn
      little finger domain only complexed with DNA polymerase III beta subunit
      complexed with so4
      1. chain c [99680]
      2. chain d [99681]
4. DNA polymerase iota [111015]
  1. Human (Homo sapiens) [TaxId: 9606] [111016] (8)
    SQ Q9UNA4
    1. 1zet
      automatically matched to d1t3na1
      complexed with bru, doc, mg, ttp
      1. region a:300-414 [124997]
    2. 2dpi
      automatically matched to d1t3na1
      complexed with dcp, doc, eda, mg
      1. region a:300-414 [131612]
    3. 2dpj
      automatically matched to d1t3na1
      complexed with doc, eda, mg, ttp
      1. region a:300-414 [131614]
    4. 2flp
      automatically matched to d1t3na1
      complexed with doc
      1. region a:300-414 [133745]
    5. 1t3n
      complexed with doc, mg, ttp
      1. region a:300-414 [106363]
      2. region b:720-834 [106365]
    6. 2alz
      automatically matched to d1t3na1
      complexed with dcp, doc, mg
      1. region a:300-414 [126994]
    7. 2fln
      automatically matched to d1t3na1
      complexed with doc
      1. region a:300-414 [133731]
    8. 2fll
      automatically matched to d1t3na1
      complexed with doc, mg, ttp
      1. region a:300-414 [133727]
5. DNA polymerase kappa [111017]
  1. Human (Homo sapiens) [TaxId: 9606] [111018] (1)
    SQ Q9UBT6 71-517
    1. 1t94
      1. region a:411-515 [106701]
      2. region b:413-515 [106703]