Structural Classification of Proteins
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Fold: Dodecin subunit-like

beta-alpha-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 132

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Dodecin subunit-like [88797]
    beta-alpha-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 132

Superfamilies:

  1. Dodecin-like [89807] (1)
    link to SUPERFAMILY database - Superfamily
    1. Dodecin-like [89808] (2)
      Subunit assembly and a probable biological unit is a dodecamer, hence the name
      1. Flavin-binding protein dodecin [89809]
        1. Archaeon Halobacterium salinarum [TaxId: 2242] [89810] (12) picpic
      2. Uncharacterized protein TTHA1431 [159869]
        1. Thermus thermophilus [TaxId: 274] [159870] (62) picpic
          SQ Q5SIE3 2-67! SQ Q5SIE3 2-68
  2. Amyloid beta a4 protein copper binding domain (domain 2) [89811] (1)
    link to SUPERFAMILY database - Superfamily
    1. Amyloid beta a4 protein copper binding domain (domain 2) [89812] (1)
      1. Amyloid beta a4 protein copper binding domain (domain 2) [89813]
        1. Human (Homo sapiens) [TaxId: 9606] [89814] (3) picpic
  3. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88798] (1)
    link to SUPERFAMILY database - Superfamily
    1. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88799] (3)
      1. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88800]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [88801] (1) picpic
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [117777] (7) picpic
          SQ P34087
        3. Human (Homo sapiens) [TaxId: 9606] [142891] (4) picpic
          SQ P62487 1-77
  4. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117778] (1)
    link to SUPERFAMILY database - Superfamily
    1. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117779] (1)
      1. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117780]
        homo-dimerisation domain
        1. Clostridium sticklandii [TaxId: 1511] [117781] (1) picpic
          SQ Q9ZFE5
  5. YbjQ-like [117782] (1)
    pentamer, beta/alpha-propeller; additional short beta-strands promote oligomeric assembly
    link to SUPERFAMILY database - Superfamily
    1. YbjQ-like [117783] (2)
      Pfam 01906; DUF 74, UPF0145
      1. Hypothetical protein YbjQ [117784]
        1. Shigella flexneri [TaxId: 623] [117785] (1) picpic
          SQ Q83LS2
      2. Hypothetical protein BC1012 [142892]
        1. Bacillus cereus [TaxId: 1396] [142893] (5) picpic
          SQ Q81H14 1-103
  6. YdgH-like [159871] (1)
    extra N-terminal structures: short strand and short helix; topological similarity to the YbjQ-like superfamily
    1. YdgH-like [159872] (2)
      Pfam 07338; DUF1471
      1. Hypothetical protein STM0082 [159873]
        1. Salmonella typhimurium [TaxId: 90371] [159874] (2) picpic
          SQ Q7CR88 1-96
      2. Putative periplasmic protein YahO [159875]
        SCH_0407
        1. Salmonella choleraesuis [TaxId: 28901] [159876] (1) picpic
          SQ Q57SJ8 1-91
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk