Structural Classification of Proteins
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Family: Dihydrodipicolinate reductase-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: FwdE/GAPDH domain-like [55346]
    core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
  4. Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347]
    N-terminal domain is the classic Rossmann-fold
    link to SUPERFAMILY database - Superfamily
  5. Family: Dihydrodipicolinate reductase-like [55368]

Protein Domains:

  1. Diaminopimelic acid dehydrogenase (DAPDH) [55369]
    distantly related to dihydrodipicolinate reductase
    larger alpha+beta subdomain substitutes for one helix and one strand of the common fold
    1. Corynebacterium glutamicum [TaxId: 1718] [55370] (4)
      1. 1f06 picpicxref
        complexed with 2np, ndp
        1. region a:119-268 [59557] picpiclink
        2. region b:619-768 [59559] picpiclink
      2. 3dap picpicxref
        complexed with da3, ndp
        1. region a:119-268 [39966] picpiclink
        2. region b:119-268 [39967] picpiclink
      3. 2dap picpicxref
        complexed with api
        1. region a:119-268 [39965] picpiclink
      4. 1dap picpicxref
        complexed with act, ndp
        1. region a:119-268 [39968] picpiclink
        2. region b:119-268 [39969] picpiclink
  2. Dihydrodipicolinate reductase [55371]
    1. Escherichia coli [TaxId: 562] [55372] (5)
      1. 1dih picpicxref
        complexed with ndp
        1. region a:131-240 [39971] picpiclink
      2. 1dru picpicxref
        complexed with nah
        1. region a:131-240 [39970] picpiclink
      3. 1drw picpicxref
        complexed with nhd
        1. region a:131-240 [39972] picpiclink
      4. 1drv picpicxref
        complexed with nac
        1. region a:131-240 [39973] picpiclink
      5. 1arz picpicxref
        complexed with k, nad, pdc, po4
        1. region a:131-240 [39974] picpiclink
        2. region b:131-240 [39975] picpiclink
        3. region c:131-240 [39976] picpiclink
        4. region d:131-240 [39977] picpiclink
    2. Mycobacterium tuberculosis [TaxId: 1773] [103104] (14)
      1. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region a:106-214 [123626] picpiclink
      2. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region b:106-214 [123628] picpiclink
      3. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region c:106-214 [123630] picpiclink
      4. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region d:106-214 [123632] picpiclink
      5. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region e:106-214 [123634] picpiclink
      6. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region f:106-214 [123636] picpiclink
      7. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region g:106-214 [123638] picpiclink
      8. 1yl7 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1c3va2
        complexed with mg, nad
        1. region h:106-214 [123640] picpiclink
      9. 1yl5 picpicxrefxref
        automatically matched to d1c3va2
        complexed with mg
        1. region a:106-214 [123618] picpiclink
      10. 1yl5 picpicxrefxref
        automatically matched to d1c3va2
        complexed with mg
        1. region b:106-214 [123620] picpiclink
      11. 1p9l picpicxref
        complexed with nad, pdc, pg4
        1. region a:106-214 [94394] picpiclink
        2. region b:106-214 [94396] picpiclink
      12. 1c3v picpicxref
        complexed with ndp, pdc, pg4
        1. region a:606-714 [90412] picpiclink
        2. region b:1106-1214 [90414] picpiclink
      13. 1yl6 picpicxrefxref
        automatically matched to d1c3va2
        complexed with mg
        1. region a:106-214 [123622] picpiclink
      14. 1yl6 picpicxrefxref
        automatically matched to d1c3va2
        complexed with mg
        1. region b:106-214 [123624] picpiclink
    3. Thermotoga maritima [TaxId: 2336] [111048] (1)
      SQ Q9X1K8
      1. 1vm6 picpicxref
        Structural genomics target
        complexed with act, edo, nad, pg4
        1. region a:97-182 [108877] picpiclink
        2. region b:97-182 [108879] picpiclink
        3. region c:97-182 [108881] picpiclink
        4. region d:97-182 [108883] picpiclink
  3. Myo-inositol 1-phosphate synthase [75484]
    1. Mycobacterium tuberculosis [TaxId: 1773] [75485] (1)
      1. 1gr0 picpicxref
        complexed with cac, nad, zn
        1. region a:201-311 [70380] picpiclink
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [75486] (9)
      SQ P11986
      1. 1p1j picpicxref
        complexed with cry, nai, po4
        1. region a:323-437 [87688] picpiclink
        2. region b:323-437 [87690] picpiclink
      2. 1rm0 picpicxref
        complexed with d6p, mn, nai
        1. region a:323-437 [104991] picpiclink
        2. region b:323-437 [104993] picpiclink
      3. 1p1h picpicxref
        complexed with nad
        1. region a:323-437 [87676] picpiclink
        2. region b:323-437 [87678] picpiclink
        3. region c:323-437 [87680] picpiclink
        4. region d:323-437 [87682] picpiclink
      4. 1p1k picpicxref
        complexed with nai
        1. region a:323-437 [87692] picpiclink
        2. region b:323-437 [87694] picpiclink
      5. 1la2 picpicxref
        complexed with mse, nad
        1. region a:323-437 [73774] picpiclink
        2. region b:323-437 [73776] picpiclink
        3. region c:323-437 [73778] picpiclink
        4. region d:323-437 [73780] picpiclink
      6. 1p1i picpicxref
        complexed with nad
        1. region a:323-437 [87684] picpiclink
        2. region b:323-437 [87686] picpiclink
      7. 1p1f picpicxref
        1. region a:323-437 [87672] picpiclink
        2. region b:323-437 [87674] picpiclink
      8. 1jki picpicxref
        complexed with dg6, nai, nh4
        1. region a:323-437 [71705] picpiclink
        2. region b:323-437 [71707] picpiclink
      9. 1jkf picpicxref
        complexed with nad
        1. region a:323-437 [71701] picpiclink
        2. region b:323-437 [71703] picpiclink
    3. Archaeoglobus fulgidus [TaxId: 2234] [111049] (1)
      SQ O28480
      1. 1u1i picpicxref
        complexed with k, nad, po4
        1. region a:228-332 [107583] picpiclink
        2. region b:628-732 [107585] picpiclink
        3. region c:1028-1132 [107587] picpiclink
        4. region d:1428-1532 [107589] picpiclink
    4. Caenorhabditis elegans [TaxId: 6239] [111050] (1)
      SQ Q18664
      1. 1vko picpicxref
        Structural genomics target
        complexed with cl, iod, k, nad, pop
        1. region a:315-428 [108685] picpiclink
  4. Hypothetical protein TM1419 [103105]
    myo-inositol 1-phosphate synthase-related protein
    1. Thermotoga maritima [TaxId: 2336] [103106] (1)
      1. 1vjp picpicxref
        structural genomics
        complexed with cl, mo2, nad
        1. region a:210-316 [100829] picpiclink
  5. Hypothetical protein TM1643 [75487]
    1. Thermotoga maritima [TaxId: 2336] [75488] (2)
      1. 1j5p picpicxref
        complexed with nad
        1. region a:109-211 [71577] picpiclink
      2. 1h2h picpicxref
        complexed with mse, nad
        1. region a:109-211 [70861] picpiclink
  6. 1-deoxy-D-xylulose-5-phosphate reductoisomerase [69770]
    1. Escherichia coli [TaxId: 562] [69771] (12)
      SQ P45568
      1. 1q0q picpicxrefxref
        complexed with dxp, ndp
        1. region a:126-274 [104466] picpiclink
        2. region b:126-274 [104469] picpiclink
      2. 1q0h picpicxrefxref
        complexed with cit, fom, ndp
        1. region a:126-274 [104442] picpiclink
      3. 1jvs picpicxrefxref
        complexed with mse, ndp, so4
        1. region a:126-274 [77189] picpiclink
        2. region b:126-274 [77192] picpiclink
      4. 2egh picpicxrefxrefxrefxref
        automatically matched to d1jvsa3
        complexed with fom, mg, ndp
        1. region a:126-274 [132123] picpiclink
      5. 2egh picpicxrefxrefxrefxref
        automatically matched to d1jvsa3
        complexed with fom, mg, ndp
        1. region b:126-274 [132126] picpiclink
      6. 1t1r picpicxrefxref
        complexed with imb, so4
        1. region a:126-274 [106265] picpiclink
        2. region b:126-274 [106269] picpiclink
      7. 1t1s picpicxrefxref
        complexed with cbq, mg, so4
        1. region a:126-274 [106273] picpiclink
        2. region b:126-274 [106277] picpiclink
      8. 1q0l picpicxrefxref
        complexed with fom, ndp
        1. region a:126-274 [104457] picpiclink
      9. 1ono picpicxrefxref
        complexed with mw3
        1. region a:126-274 [87161] picpiclink
        2. region b:126-274 [87164] picpiclink
      10. 1k5h picpicxrefxref
        1. region a:126-274 [68194] picpiclink
        2. region b:126-274 [68197] picpiclink
        3. region c:126-274 [68200] picpiclink
      11. 1onn picpicxrefxref
        1. region a:126-274 [87155] picpiclink
        2. region b:126-274 [87158] picpiclink
      12. 1onp picpicxrefxref
        complexed with fom, mw1
        1. region a:126-274 [87167] picpiclink
        2. region b:126-274 [87170] picpiclink
    2. Zymomonas mobilis [TaxId: 542] [111051] (2)
      SQ Q9X5F2
      1. 1r0k picpicxrefxref
        complexed with act
        1. region a:127-264 [104725] picpiclink
        2. region b:127-264 [104728] picpiclink
        3. region c:127-264 [104731] picpiclink
        4. region d:127-264 [104734] picpiclink
      2. 1r0l picpicxrefxref
        complexed with ndp
        1. region a:127-264 [104737] picpiclink
        2. region b:127-264 [104740] picpiclink
        3. region c:127-264 [104743] picpiclink
        4. region d:127-264 [104746] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk