Family: TRAPP components

Pfam 04051; form homo- and hetero-dimers with the first two helices of one subunit complementing the fold of the other subunit to the H-NOX domain fold

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Ligand-binding domain in the NO signalling and Golgi transport [111125]
   an N-terminal helical bundle and the C-terminal alpha-beta(2)-alpha-beta(2) subdomain enclose a ligand-binding cavity
4. Superfamily: Ligand-binding domain in the NO signalling and Golgi transport [111126]
   uperfamily
5. Family: TRAPP components [118076]
   Pfam 04051; form homo- and hetero-dimers with the first two helices of one subunit complementing the fold of the other subunit to the H-NOX domain fold

Protein Domains:

1. Trafficking protein particle complex subunit 3, Bet3 homolog [118077]
   covalently linked long fatty acid occupies the ligand-binding cavity
   1. Mouse (Mus musculus) [TaxId: 10090] [118078] (3)
      SQ O55013 9-173
      1. 1wc9
         complexed with gol, myr
         1. chain a [114507]
      2. 2pwn
         automatically matched to d1wc8a_
         complexed with myr
         1. region a:12-173 [139764]
      3. 1wc8
         complexed with myr
         1. chain a [114506]
2. TRAPPC5, similar to trafficking protein particle complex 5 [160687]
   1. Zebrafish (Brachydanio rerio) [TaxId: 7955] [160688] (2)
      SQ Q6DGL5 21-188
      1. 2j3w
         complexed with p1l
         1. region b:21-188 [145643]
      2. 2j3w
         automatically matched to 2J3W B:21-188
         complexed with p1l
         1. region f:22-188 [145644]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk