Structural Classification of Proteins
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Family: Ubiquitin-related

Pfam 00240

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: beta-Grasp (ubiquitin-like) [54235]
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. Superfamily: Ubiquitin-like [54236]
    link to SUPERFAMILY database - Superfamily
  5. Family: Ubiquitin-related [54237]
    Pfam 00240

Protein Domains:

  1. Ubiquitin [54238]
    1. Human (Homo sapiens) [TaxId: 9606] [54239] (102) picpic
      SQ P62988
      identical sequence in many other species
    2. Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932] [89830] (7) picpic
    3. Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1) picpic
  2. SUMO-1 (smt3 homologue) [54241]
    1. Human (Homo sapiens) [TaxId: 9606] [54242] (17) picpic
      SQ Q93068
    2. Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932] [54243] (4) picpic
  3. Nedd8 [54244]
    1. Human (Homo sapiens) [TaxId: 9606] [54245] (7) picpic
      SQ Q15843
  4. Elongin B [54246]
    1. Human (Homo sapiens) [TaxId: 9606] [54247] (7) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [142930] (1) picpic
      SQ P62869 1-98
  5. Rub1 [54248]
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [54249] (1) picpic
  6. Ubiquitin-like modifier protein hub1 [82579]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82580] (1) picpic
  7. Ubiquitin-like N-terminal domain of PLIC-2 [75358]
    1. Human (Homo sapiens) [TaxId: 9606] [75359] (1) picpic
  8. Ubiquitin-like domain of parkin [89831]
    1. Human (Homo sapiens) [TaxId: 9606] [89832] (1) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [89833] (2) picpic
  9. Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775]
    1. Human (Homo sapiens) [TaxId: 9606] [102776] (4) picpic
  10. Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777]
    1. Human (Homo sapiens) [TaxId: 9606] [102778] (2) picpic
      SQ P54727 1-82
  11. Ubiquitin-like protein 5, ubl5 [102779]
    1. Human (Homo sapiens) [TaxId: 9606] [102780] (1) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [102781] (1) picpic
  12. Hypothetical protein At3g01050 [102782]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [102783] (1) picpic
  13. Ubiquitin-like protein 3300001g02rik [102784]
    1. Mouse (Mus musculus) [TaxId: 10090] [102785] (1) picpic
  14. Ubiquitin-like domain of tubulin folding cofactor B [102786]
    1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [102787] (1) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [117798] (1) picpic
      SQ Q9D1E6 11-92
  15. 1700011n24rik protein [110796]
    1. Mouse (Mus musculus) [TaxId: 10090] [110797] (1) picpic
      SQ Q9DAF3 1-89
  16. 8430435i17rik protein [110798]
    1. Mouse (Mus musculus) [TaxId: 10090] [110799] (1) picpic
      SQ Q8BGR9 3-79
  17. hypothetical D7wsu128e protein [110800]
    1. Mouse (Mus musculus) [TaxId: 10090] [110801] (1) picpic
      SQ Q78JW9 76-157
  18. Splicing factor 3 subunit 1, C-terminal domain [117799]
    1. Mouse (Mus musculus) [TaxId: 10090] [117800] (1) picpic
      SQ Q8K4Z5 685-786
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117801] (1) picpic
      SQ Q8RXF1 683-780; T5E21.13/At1g14650
    3. Human (Homo sapiens) [TaxId: 9606] [142931] (1) picpic
      SQ Q15459 704-789
  19. Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802]
    1. Human (Homo sapiens) [TaxId: 9606] [117803] (1) picpic
      SQ Q15011 10-90
  20. Ubiquitin carboxyl-terminal hydrolase 14 [117804]
    1. Mouse (Mus musculus) [TaxId: 10090] [117805] (1) picpic
      SQ Q9JMA1 3-85
  21. Ubiquitin-like protein 3, Ubl3 [117806]
    1. Mouse (Mus musculus) [TaxId: 10090] [117807] (1) picpic
      SQ Q9Z2M6 1-103
  22. 2'-5'-oligoadenylate synthetase-like protein, OASL [117808]
    1. Human (Homo sapiens) [TaxId: 9606] [117809] (1) picpic
      SQ Q15646 434-507
  23. Ubiquitin-like protein bab25500 (2010008E23Rik) [117810]
    1. Mouse (Mus musculus) [TaxId: 10090] [117811] (1) picpic
      SQ Q9D8C5 163-244
  24. Tubulin-folding protein TbcE [117812]
    1. Mouse (Mus musculus) [TaxId: 10090] [117813] (1) picpic
      SQ Q8CIV8 441-524
  25. NEDD8 ultimate buster-1, NUB1 [117814]
    1. Human (Homo sapiens) [TaxId: 9606] [117815] (1) picpic
      SQ Q9Y5A7 75-161
  26. SUMO-2 [117816]
    1. Human (Homo sapiens) [TaxId: 9606] [117817] (13) picpic
      SQ P61956
  27. Bag-family molecular chaperone regulator-1 [142932]
    1. Human (Homo sapiens) [TaxId: 9606] [142933] (1) picpic
      SQ Q99933 72-152
      the BAG domain structure is also known (scop_sp 63494)
  28. NPL4-like protein 1 [142934]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [142935] (1) picpic
      SQ Q9LYC2 2-95
  29. Interferon-induced 15 kDa protein [142936]
    1. Human (Homo sapiens) [TaxId: 9606] [142937] (2) picpic
      SQ P05161 2-77! SQ P05161 78-153
  30. Ubiquitin-like protein smt3a, SUMO-3 [142938]
    1. Human (Homo sapiens) [TaxId: 9606] [142939] (1) picpic
      SQ P55854 14-92
  31. DSK2 [142940]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142941] (5) picpic
      SQ P48510 2-74
  32. Ubiquitin-like protein 7 [142942]
    1. Mouse (Mus musculus) [TaxId: 10090] [142943] (1) picpic
      SQ Q91W67 1-94
  33. Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944]
    1. Human (Homo sapiens) [TaxId: 9606] [142945] (1) picpic
      SQ Q96PU4 1-76
  34. Ubiquilin-3 [142946]
    1. Human (Homo sapiens) [TaxId: 9606] [142947] (2) picpic
      SQ Q9H347 11-104! SQ Q9H347 15-98
  35. Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948]
    1. Human (Homo sapiens) [TaxId: 9606] [142949] (2) picpic
      SQ Q96T88 1-76
  36. 4931431F19Rik [142950]
    1. Mouse (Mus musculus) [TaxId: 10090] [142951] (1) picpic
      SQ Q9D4I8 14-96
      structure of the C-terminal UBA domain is also known (PDB 1vej)
  37. Large proline-rich protein BAT3 [142952]
    1. Human (Homo sapiens) [TaxId: 9606] [142953] (1) picpic
      SQ P46379 17-89
  38. Dendritic cell-derived ubiquitin-like protein [142954]
    1. Human (Homo sapiens) [TaxId: 9606] [142955] (1) picpic
      SQ Q8WUN7 149-228
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk