Structural Classification of Proteins
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Fold: UBC-like

alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: UBC-like [54494]
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2

Superfamilies:

  1. UBC-like [54495] (4)
    link to SUPERFAMILY database - Superfamily
    1. UBC-related [54496] (38)
      1. Ubiquitin conjugating enzyme, UBC [54497]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [54498] (1)
          1. 2aak picpic
            1. chain a [38325] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932] [69685] (3)
          SQ P21734
          1. 1fzy picpic
            1. chain a [65072] picpiclink
            2. chain b [65073] picpiclink
          2. 1fxt picpicxref
            1. chain a [65055] picpiclink
          3. 1tte picpicxref
            mutant
            1. region a:2-160 [107296] picpiclink
        3. Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932] [54499] (1)
          1. 1ayz picpic
            1. chain a [38326] picpiclink
            2. chain b [38327] picpiclink
            3. chain c [38328] picpiclink
        4. Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId: 4932] [54500] (1)
          1. 1qcq picpic
            1. chain a [38329] picpiclink
        5. Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932] [54501] (1)
          1. 2ucz picpic
            1. chain a [38330] picpiclink
        6. Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932] [64239] (3)
          1. 1jat picpicxref
            complexed with Mms2
            1. chain a [62818] picpiclink
          2. 1jbb picpic
            1. chain a [62842] picpiclink
            2. chain b [62843] picpiclink
          3. 2gmi picpicxrefxref
            mutant
            1. region a:1-152 [145218] picpiclink
        7. Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932] [64241] (2)
          1. 1jat picpicxref
            complexed with ubc13
            1. chain b [62819] picpiclink
          2. 2gmi picpicxrefxref
            automatically matched to d1jatb_
            mutant
            1. region b:3-137 [135381] picpiclink
        8. Human (Homo sapiens), ubc13 [TaxId: 9606] [64240] (5)
          1. 1j7d picpicxref
            complexed with Mms2
            1. chain b [62681] picpiclink
          2. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1j7db_
            1. region b:6-154 [129686] picpiclink
          3. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1j7db_
            1. region e:6-154 [129688] picpiclink
          4. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1j7db_
            1. region h:6-154 [129690] picpiclink
          5. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1j7db_
            1. region k:6-154 [129692] picpiclink
        9. Human (Homo sapiens), mms2 [TaxId: 9606] [64242] (3)
          1. 1j74 picpic
            1. chain a [62672] picpiclink
          2. 1j7d picpicxref
            complexed with ubc13
            1. chain a [62680] picpiclink
          3. 1zgu picpicxref
            automatically matched to d1j7da_
            mutant
            1. region a:12-150 [125061] picpiclink
        10. Human (Homo sapiens), ubch7 [TaxId: 9606] [54502] (2)
          1. 1c4z picpicxref
            1. chain d [38331] picpiclink
          2. 1fbv picpicxrefxrefxrefxref
            complexed with so4, zn
            1. chain c [38332] picpiclink
        11. Human (Homo sapiens), ubc9 [TaxId: 9606] [54503] (12)
          identical sequence in many other species
          1. 2uyz picpicxref
            annotated as mouse protein in PDB
            complexed with na; mutant
            1. region a:3-158 [145768] picpiclink
          2. 2grn picpicxref
            automatically matched to d1u9aa_
            1. region a:1-157 [135568] picpiclink
          3. 1u9a picpic
            CASP2
            1. chain a [38333] picpiclink
          4. 1u9b picpic
            mutant
            1. chain a [38334] picpiclink
          5. 2vrr picpicxref
            automatically matched to d1u9aa_
            complexed with fmt, na
            1. region a:2-158 [153522] picpiclink
          6. 2pe6 picpicxref
            automatically matched to d1u9aa_
            1. region a:1-157 [139667] picpiclink
          7. 1kps picpicxref
            complexed with so4
            1. chain a [68786] picpiclink
            2. chain c [68788] picpiclink
          8. 1a3s picpic
            1. chain a [38335] picpiclink
          9. 2o25 picpicxrefxrefxrefxref
            automatically matched to d1u9aa_
            1. region c:2-158 [138890] picpiclink
          10. 2o25 picpicxrefxrefxrefxref
            automatically matched to d1u9aa_
            1. region d:2-157 [138891] picpiclink
          11. 1z5s picpicxrefxref
            automatically matched to d1u9aa_
            1. region a:2-157 [124491] picpiclink
          12. 2px9 picpic
            automatically matched to d1u9aa_
            1. region b:1-158 [149906] picpiclink
        12. Human (Homo sapiens), ubch10 [TaxId: 9606] [64243] (1)
          1. 1i7k picpic
            mutant
            1. chain a [61889] picpiclink
            2. chain b [61890] picpiclink
        13. Human (Homo sapiens), ubc2b [TaxId: 9606] [102840] (1)
          E2-17 kDa
          1. 1jas picpic
            1. chain a [90882] picpiclink
        14. Human (Homo sapiens), ubch5b [TaxId: 9606] [102841] (14)
          SQ P62837
          E2-17 kDa 2
          1. 2esk picpic
            automatically matched to d1ur6a_
            1. region a:1-147 [132326] picpiclink
          2. 2esq picpic
            mutant
            1. region a:1-147 [132343] picpiclink
          3. 2esp picpic
            complexed with cl, mpd; mutant
            1. region a:1-147 [132342] picpiclink
          4. 2eso picpic
            mutant
            1. region a:1-147 [132341] picpiclink
          5. 2c4o picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region a:1-147 [129838] picpiclink
          6. 2c4o picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region b:1-147 [129839] picpiclink
          7. 2c4o picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region c:1-147 [129840] picpiclink
          8. 2c4o picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region d:1-147 [129841] picpiclink
          9. 2clw picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region a:1-147 [130596] picpiclink
          10. 2clw picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region b:1-147 [130597] picpiclink
          11. 2clw picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region c:1-147 [130598] picpiclink
          12. 2clw picpic
            automatically matched to d1ur6a_
            complexed with gol, so4
            1. region d:1-147 [130599] picpiclink
          13. 1ur6 picpicxref
            complexed with zn
            1. chain a [99811] picpiclink
          14. 1w4u picpic
            1. chain a [114194] picpiclink
        15. Clam (Spisula solidissima), E-2C [TaxId: 6584] [54504] (1)
          1. 2e2c picpic
            1. chain a [38336] picpiclink
        16. Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239] [89862] (1)
          1. 1pzv picpic
            1. chain a [88342] picpiclink
        17. Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239] [102842] (2)
          1. 1z3d picpic
            automatically matched to d1q34a_
            1. region a:2-150 [124399] picpiclink
          2. 1q34 picpic
            1. chain a [95658] picpiclink
            2. chain b [95659] picpiclink
            3. chain c [95660] picpiclink
        18. Human (Homo sapiens), ubch8 [TaxId: 9606] [117850] (1)
          SQ Q96LR5 54-201
          1. 1y6l picpic
            1. chain a [116509] picpiclink
            2. chain b [116510] picpiclink
            3. chain c [116511] picpiclink
        19. Human(Homo sapiens), E2 S [TaxId: 9606] [143048] (2)
          SQ Q16763 6-156
          1. 1zdn picpic
            complexed with na
            1. region a:6-156 [124943] picpiclink
          2. 1zdn picpic
            automatically matched to 1ZDN A:6-156
            complexed with na
            1. region b:10-156 [124944] picpiclink
        20. Leishmania major [TaxId: 5664] [143049] (3)
          SQ Q4Q5L3 9-166
          Ubiquitin carrier protein 4, putative
          1. 1yf9 picpic
            complexed with cl
            1. region a:13-170 [123054] picpiclink
          2. 1yf9 picpic
            automatically matched to 1YF9 A:13-170
            complexed with cl
            1. region b:13-170 [123055] picpiclink
          3. 1yf9 picpic
            automatically matched to 1YF9 A:13-170
            complexed with cl
            1. region c:13-170 [123056] picpiclink
        21. Human (Homo sapiens), E2 J2 [TaxId: 9606] [143050] (2)
          SQ Q5T7L1 12-168
          ubc6 homologue
          1. 2f4w picpic
            1. region a:12-168 [132958] picpiclink
          2. 2f4w picpic
            automatically matched to 2F4W A:12-168
            1. region b:12-168 [132959] picpiclink
        22. Human (Homo sapiens), E2 variant 1 [TaxId: 9606] [143051] (5)
          SQ Q13404 80-221! SQ Q13404 82-220
          1. 2a4d picpic
            1. region a:82-220 [126152] picpiclink
          2. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            1. region c:33-174 [129687] picpiclink
          3. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C2V C:33-174
            1. region f:36-174 [129689] picpiclink
          4. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C2V C:33-174
            1. region i:36-174 [129691] picpiclink
          5. 2c2v picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C2V C:33-174
            1. region l:36-174 [129693] picpiclink
        23. Human (Homo sapiens), E2 L6 [TaxId: 9606] [143052] (3)
          SQ O14933 2-151
          1. 1wzv picpic
            1. region a:2-151 [121529] picpiclink
          2. 1wzv picpic
            automatically matched to 1WZV A:2-151
            1. region b:2-151 [121530] picpiclink
          3. 1wzw picpic
            automatically matched to 1WZV A:2-151
            1. region a:2-151 [121531] picpiclink
        24. Human (Homo sapiens), E2 U [TaxId: 9606] [143053] (1)
          SQ Q5VVX9 1-148
          1. 1yrv picpic
            1. region a:1-148 [123941] picpiclink
        25. Human (Homo sapiens), E2 D3 [TaxId: 9606] [143054] (5)
          SQ P61077 1-147
          1. 1x23 picpic
            1. region a:1-147 [121615] picpiclink
          2. 1x23 picpic
            automatically matched to 1X23 A:1-147
            1. region b:1-147 [121616] picpiclink
          3. 1x23 picpic
            automatically matched to 1X23 A:1-147
            1. region c:1-147 [121617] picpiclink
          4. 1x23 picpic
            automatically matched to 1X23 A:1-147
            1. region d:1-147 [121618] picpiclink
          5. 2fuh picpicxref
            automatically matched to 1X23 A:1-147
            1. region a:2-147 [134173] picpiclink
        26. Human (Homo sapiens), E2 H [TaxId: 9606] [143055] (2)
          SQ P62256 4-155
          1. 1yh6 picpic
            1. region a:23-174 [123160] picpiclink
          2. 1yh6 picpic
            automatically matched to 1YH6 A:23-174
            1. region b:25-174 [123161] picpiclink
        27. Human (Homo sapiens), E2 G1 [TaxId: 9606] [143056] (1)
          SQ P62253 7-131
          1. 2awf picpic
            1. region a:7-131 [127432] picpiclink
        28. Human (Homo sapiens), E2 T [TaxId: 9606] [143057] (1)
          SQ Q9NPD8 1-154
          Hspc150
          1. 1yh2 picpic
            1. region a:1-154 [123158] picpiclink
        29. Human (Homo sapiens), E2 M [TaxId: 9606] [143058] (2)
          SQ P61081 27-183
          the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
          1. 1y8x picpicxref
            1. region a:27-183 [122769] picpiclink
          2. 2nvu picpicxrefxrefxrefxrefxref
            complexed with atp, mg, zn; mutant
            1. region c:3-183 [145698] picpiclink
        30. Toxoplasma gondii [TaxId: 5811] [143059] (1)
          1. 2ayv picpic
            complexed with unx
            1. region a:1-146 [127572] picpiclink
        31. Caenorhabditis elegans, E2 2 [TaxId: 6239] [143060] (1)
          SQ P35129 1-147
          1. 1z2u picpic
            complexed with bu3, cl, na, unx
            1. region a:1-147 [124389] picpiclink
        32. Xenopus laevis [TaxId: 8355] [160080] (1)
          1. 3eb6 picpic
            automatically matched to d1ur6a_
            complexed with zn
            1. region b:1-147 [158081] picpiclink
      2. Ubiquitin-protein ligase W (E2 W) [143061]
        forms segment-swapped dimer
        1. Human (Homo sapiens) [TaxId: 9606] [143062] (2)
          SQ Q96B02 1-117
          1. 2a7l picpic
            complexed with na
            1. region a:1-117 [126350] picpiclink
          2. 2a7l picpic
            automatically matched to 2A7L A:1-117
            complexed with na
            1. region b:1-117 [126351] picpiclink
      3. Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain [143063]
        ubc1 homologue; also contains the C-terminal UBA domain
        1. Human (Homo sapiens) [TaxId: 9606] [143064] (5)
          SQ P61086 1-156
          1. 3e46 picpicxref
            automatically matched to d1ylaa2
            complexed with ca; mutant
            1. region a:1-156 [157995] picpiclink
          2. 1yla picpicxrefxref
            1. region a:1-156 [123642] picpiclink
          3. 1yla picpicxrefxref
            automatically matched to 1YLA A:1-156
            1. region b:1-156 [123644] picpiclink
          4. 2o25 picpicxrefxrefxrefxref
            automatically matched to 1YLA A:1-156
            1. region a:1-156 [138887] picpiclink
          5. 2o25 picpicxrefxrefxrefxref
            automatically matched to 1YLA A:1-156
            1. region b:3-156 [138889] picpiclink
        2. Cow (Bos taurus) [TaxId: 9913] [143065] (2)
          SQ P61085 1-154
          1. 2bep picpic
            complexed with bme
            1. region a:1-154 [128385] picpiclink
          2. 2bf8 picpicxref
            automatically matched to 2BEP A:1-154
            1. region a:2-154 [128411] picpiclink
      4. Hypothetical protein Tgtwinscan_2721, E2 domain [143066]
        1. Toxoplasma gondii [TaxId: 5811] [143067] (2)
          1. 2f4z picpic
            complexed with gol, unx
            1. region a:32-192 [132963] picpiclink
          2. 2f4z picpic
            automatically matched to 2F4Z A:32-192
            complexed with gol, unx
            1. region b:33-192 [132964] picpiclink
      5. Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain [143068]
        this proteins contains the N-terminal RWD domain
        1. Human (Homo sapiens) [TaxId: 9606] [143069] (1)
          SQ Q8WVN8 201-362
          1. 1zuo picpic
            complexed with bme
            1. region a:201-362 [125680] picpiclink
      6. Putative ubiquitin-conjugating enzyme, E2 domain [143070]
        1. Plasmodium chabaudi [TaxId: 5825] [143071] (1)
          SQ Q4Y037 88-196
          1. 2fo3 picpic
            1. region a:9-117 [133868] picpiclink
    2. UEV domain [75383] (2)
      1. Tumor susceptibility gene 101 (TSG101) [75384]
        1. Human (Homo sapiens) [TaxId: 9606] [75385] (7)
          1. 1s1q picpicxref
            complexed with acy, cu, so4
            1. chain a [98351] picpiclink
            2. chain c [98353] picpiclink
          2. 2f0r picpic
            automatically matched to d1kppa_
            complexed with so4
            1. region a:3-145 [132671] picpiclink
          3. 2f0r picpic
            automatically matched to d1kppa_
            complexed with so4
            1. region b:3-145 [132672] picpiclink
          4. 1m4q picpic
            complex with a hiv-1 ptap "late domain" peptide
            1. chain a [78608] picpiclink
          5. 1kpp picpic
            1. chain a [72846] picpiclink
          6. 1kpq picpic
            1. chain a [72847] picpiclink
          7. 1m4p picpic
            complex with a hiv-1 ptap "late domain" peptide
            1. chain a [78607] picpiclink
      2. Vacuolar protein sorting-associated [102843]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102844] (1)
          1. 1uzx picpicxref
            complexed with mes, mso, so4
            1. chain a [100238] picpiclink
    3. RWD domain [110843] (4)
      Pfam 05773
      1. EIF2-alpha kinase 4 (GCN2-like protein) [110844]
        1. Mouse (Mus musculus) [TaxId: 10090] [110845] (1)
          SQ Q9QZ05 17-139
          1. 1ukx picpic
            Structural genomics target
            1. chain a [107919] picpiclink
      2. E3 ubiquitin-protein ligase RNF25 [160081]
        RING finger protein 25
        1. Human (Homo sapiens) [TaxId: 9606] [160082] (2)
          SQ Q96BH1 10-125! SQ Q96BH1 10-134
          1. 2day picpic
            1. region a:8-122 [146479] picpiclink
          2. 2dmf picpic
            1. region a:8-131 [146547] picpiclink
      3. Uncharacterized protein C21orf6 [160083]
        1. Human (Homo sapiens) [TaxId: 9606] [160084] (1)
          SQ P57060 34-173
          1. 2dax picpic
            1. region a:8-147 [146478] picpiclink
      4. RWD domain-containing protein 2 [160085]
        1. Human (Homo sapiens) [TaxId: 9606] [160086] (1)
          SQ Q9UIY3 1-141
          1. 2daw picpic
            1. region a:8-148 [146477] picpiclink
    4. UFC1-like [143072] (1)
      1. Ufm1-conjugating enzyme 1, UFC1 [143073]
        aka cgi-126
        1. Human (Homo sapiens) [TaxId: 9606] [143074] (3)
          SQ Q9Y3C8 1-167
          1. 2in1 picpic
            automatically matched to 1YWZ A:1-167
            1. region a:3-164 [137521] picpiclink
          2. 2in1 picpic
            automatically matched to 1YWZ A:1-167
            1. region b:3-164 [137522] picpiclink
          3. 1ywz picpic
            1. region a:1-167 [124167] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk