Structural Classification of Proteins
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Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 5 [TaxId: 10090] [88555]

PDB Entry Domains:

  1. 1a2y picpicxrefxref
    part of Fv D1.3
    complexed with po4; mutant
    1. chain b [19927] picpiclink
  2. 1vfa picpicxref
    part of Fv D1.3
    1. chain b [19929] picpiclink
  3. 1g7j picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19933] picpiclink
  4. 1vfb picpicxrefxref
    part of Fv D1.3
    1. chain b [19931] picpiclink
  5. 1g7m picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19937] picpiclink
  6. 1g7i picpicxrefxref
    part of Fv D1.3
    complexed with po4; mutant
    1. chain b [19935] picpiclink
  7. 1fns picpicxrefxrefxrefxref
    part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
    mutant
    1. region h:215-336 [20289] picpiclink
  8. 1kiq picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19939] picpiclink
  9. 1a7n picpicxref
    part of Fv D1.3
    mutant
    1. chain h [19941] picpiclink
  10. 1a7r picpicxref
    part of Fv D1.3
    mutant
    1. chain h [19945] picpiclink
  11. 1g7l picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19959] picpiclink
  12. 1g7h picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19949] picpiclink
  13. 1a7o picpicxref
    part of Fv D1.3
    mutant
    1. chain h [19943] picpiclink
  14. 1kir picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19947] picpiclink
  15. 1a7q picpicxref
    part of Fv D1.3
    mutant
    1. chain h [19955] picpiclink
  16. 1a7p picpicxref
    part of Fv D1.3
    complexed with acy; mutant
    1. chain h [19951] picpiclink
  17. 1kip picpicxrefxref
    part of Fv D1.3
    mutant
    1. chain b [19957] picpiclink
  18. 1dvf picpicxrefxrefxref
    part of Fv D1.3
    CASP1
    complexed with zn
    1. chain b [19953] picpiclink
  19. 1fe8 picpicxrefxrefxrefxref
    part of Fab RU5 inhibiting the collagen binding by the von willebrand factor a3 domain
    complexed with cac, fuc, nag
    1. region h:1-115 [59786] picpiclink
    2. region i:1-115 [59788] picpiclink
    3. region j:1-115 [59790] picpiclink
  20. 1nc2 picpicxrefxrefxref
    part of Fab 2d12.5
    complexed with cl, doe, nag, yt3
    1. region b:1-120 [91783] picpiclink
    2. region d:1-120 [91787] picpiclink
  21. 1nc4 picpicxrefxrefxref
    part of Fab 2d12.5
    complexed with cl, dof, gd3, nag
    1. region b:1-120 [91791] picpiclink
    2. region d:1-120 [91795] picpiclink
  22. 43c9 picpicxref
    part of sterolytic and amidolytic Fv 43c9
    1. chain b [20387] picpiclink
    2. chain d [20389] picpiclink
    3. chain f [20391] picpiclink
    4. chain h [20393] picpiclink
  23. 1oak picpicxrefxrefxrefxref
    part of Fab NMC-4 blocking the von willebrand factor (vwf) a1 domain function
    1. region h:215-336 [20291] picpiclink
  24. 43ca picpicxref
    part of sterolytic and amidolytic Fv 43c9
    complexed with npo
    1. chain b [20395] picpiclink
    2. chain d [20397] picpiclink
    3. chain f [20399] picpiclink
    4. chain h [20401] picpiclink
  25. 1p4b picpicxref
    part of anti-GCN4 peptide scFv
    1. chain h [94098] picpiclink
  26. 1gig picpicxrefxrefxref
    part of Fab HC19
    1. region h:1-120 [19911] picpiclink
  27. 1fdl picpicxrefxrefxrefxref
    part of Fab D1.3
    1. region h:1-116 [19961] picpiclink
  28. 1cic picpicxrefxrefxrefxrefxrefxrefxref
    part of Fab D1.3
    1. region d:1-116 [19963] picpiclink
  29. 1ibg picpicxrefxrefxref
    part of Fab 40-50
    complexed with cu, obn
    1. region h:2-113 [20049] picpiclink
  30. 1p4i picpicxref
    part of anti-GCN4 peptide scFv
    mutant
    1. chain h [94104] picpiclink
  31. 1dl7 picpicxref
    part of Fv M3C65; conflict: annotated in PDB as human protein
    complexed with nch
    1. chain h [20499] picpiclink
  32. 1nld picpicxrefxrefxref
    part of Fab 1583
    1. region h:1-112 [20111] picpiclink
  33. 2vit picpicxrefxrefxrefxref
    part of Fab HC19
    complexed with zn; mutant
    1. region b:1-120 [19915] picpiclink
  34. 2vis picpicxrefxrefxrefxref
    part of Fab HC19
    complexed with nag, zn; mutant
    1. region b:1-120 [19913] picpiclink
  35. 2vir picpicxrefxrefxrefxref
    part of Fab HC19
    complexed with zn
    1. region b:1-120 [19917] picpiclink
  36. 1t4k picpicxrefxrefxref
    MQ P018119 P01868 # natural chimera; catalytic antibody with aldolase activity
    complexed with zn
    1. region b:1-113 [112237] picpiclink
    2. region d:1-113 [112241] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk