Structural Classification of Proteins

Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

: the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
Superfamily: Positive stranded ssRNA viruses [88633]
uperfamily
Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634]
the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

Protein Domains:

Human enterovirus B coat proteins [88635]
1. Human coxsackievirus B3 [TaxId: 12072] [49681] (1)
  1. 1cov
    complexed with myr, plm
    1. chain 4,2 [83045]
    2. chain 3 [23566]
    3. chain 1 [23564]
2. Human coxsackievirus A9 [TaxId: 12067] [49683] (1)
  1. 1d4m
    1. chain 4,2 [83046]
    2. chain 3 [23569]
    3. chain 1 [23567]
3. Human echovirus 1 [TaxId: 46633] [49685] (1)
  1. 1ev1
    complexed with myr, plm
    1. chain 4,2 [83050]
    2. chain 3 [23572]
    3. chain 1 [23570]
4. Human echovirus 11 [TaxId: 12078] [74890] (4)
  1. 1h8t
    complexed with doa, myr
    1. chain d,b [83061]
    2. chain c [70922]
    3. chain a [70920]
  2. 2c8i
    automatically matched to d1h8ta_
    1. region a:1-289 [130103]
  3. 2c8i
    automatically matched to d1h8tc_
    1. region c:1-238 [130104]
  4. 1upn
    1. chain d,b [99761]
    2. chain c [99763]
    3. chain a [99762]
Bovine enterovirus coat proteins [49676]
1. Bovine enterovirus, VG-5-27 [TaxId: 12064] [49677] (1)
  1. 1bev
    complexed with myr, so4
    1. chain 4,2 [83040]
    2. chain 3 [23557]
    3. chain 1 [23555]
Poliovirus coat proteins [49666]
1. Poliovirus type 1, strain Mahoney [TaxId: 12080] [49667] (12)
  1. 1hxs
    complexed with myr, plm
    1. chain 4,2 [83073]
    2. chain 3 [65954]
    3. chain 1 [65952]
  2. 1ar7
    complexed with myr, sph; mutant
    1. chain 4,2 [83032]
    2. chain 3 [23389]
    3. chain 1 [23387]
  3. 1po1
    complexed with j80, myr
    1. chain 4,2 [83102]
    2. chain 3 [23398]
    3. chain 1 [23396]
  4. 1al2
    complexed with myr, sph; mutant
    1. chain 4,2 [83030]
    2. chain 3 [23392]
    3. chain 1 [23390]
  5. 1ar9
    complexed with myr, sph; mutant
    1. chain 4,2 [83034]
    2. chain 3 [23395]
    3. chain 1 [23393]
  6. 1po2
    complexed with j77, myr
    1. chain 4,2 [83103]
    2. chain 3 [23401]
    3. chain 1 [23399]
  7. 1asj
    complexed with myr, sph
    1. chain 4,2 [83035]
    2. chain 3 [23404]
    3. chain 1 [23402]
  8. 1ar6
    complexed with myr, sph; mutant
    1. chain 4,2 [83031]
    2. chain 3 [23407]
    3. chain 1 [23405]
  9. 2plv
    complexed with myr, sph
    1. chain 4,2 [83137]
    2. chain 3 [23386]
    3. chain 1 [23384]
  10. 1ar8
    complexed with myr, sph; mutant
    1. chain 4,2 [83033]
    2. chain 3 [23410]
    3. chain 1 [23408]
  11. 1pov
    contains unprocessed VP0
    complexed with myr, sph
    1. chain 0 [23411]
    2. chain 3 [23413]
    3. chain 1 [23412]
  12. 1xyr
    automatically matched to d1pov1_
    1. region 1:71-302 [122460]
2. Poliovirus type 2, strain Lansing [TaxId: 12083] [49668] (1)
  1. 1eah
    complexed with myr, sc4
    1. chain 4,2 [83047]
    2. chain 3 [23416]
    3. chain 1 [23414]
3. Poliovirus type 3, strain Sabin [TaxId: 12086] [49669] (7)
  1. 1pvc
    complexed with myr, sph
    1. chain 4,2 [83104]
    2. chain 3 [23419]
    3. chain 1 [23417]
  2. 1vbb
    complexed with j80, myr
    1. chain 4,2 [83126]
    2. chain 3 [23422]
    3. chain 1 [23420]
  3. 1vbc
    complexed with j77, myr
    1. chain 4,2 [83127]
    2. chain 3 [23425]
    3. chain 1 [23423]
  4. 1vbe
    complexed with j78, myr; mutant
    1. chain 4,2 [83129]
    2. chain 3 [23431]
    3. chain 1 [23429]
  5. 1vbd
    complexed with j78, myr
    1. chain 4,2 [83128]
    2. chain 3 [23428]
    3. chain 1 [23426]
  6. 1vba
    complexed with j78, myr
    1. chain 4,2 [83125]
    2. chain 3 [23434]
    3. chain 1 [23432]
  7. 1piv
    complexed with myr, w71
    1. chain 4,2 [83101]
    2. chain 3 [23437]
    3. chain 1 [23435]
Rhinovirus coat proteins [49670]
1. Human rhinovirus B 14 (HRV-14) [TaxId: 12131] [49671] (30)
  1. 1ncq
    complexed with w11
    1. chain d,b [91802]
    2. chain c [91804]
    3. chain a [91803]
  2. 1k5m
    grafted HIV-1 v3 loop in chain B
    complexed with sph
    1. chain d,b [83093]
    2. chain c [72080]
    3. chain a [72078]
  3. 4rhv
    1. chain 4,2 [83147]
    2. chain 3 [23440]
    3. chain 1 [23438]
  4. 1na1
    complexed with w11
    1. chain d,b [91742]
    2. chain c [91744]
    3. chain a [91743]
  5. 1rud
    complexed with w84; mutant
    1. chain 4,2 [83115]
    2. chain 3 [23446]
    3. chain 1 [23444]
  6. 1r09
    complexed with dms, jen
    1. chain 4,2 [83110]
    2. chain 3 [23443]
    3. chain 1 [23441]
  7. 1vrh
    complexed with sd8; mutant
    1. chain 4,2 [83130]
    2. chain 3 [23467]
    3. chain 1 [23465]
  8. 2rr1
    complexed with w8r
    1. chain 4,2 [83143]
    2. chain 3 [23455]
    3. chain 1 [23453]
  9. 2r07
    complexed with w33
    1. chain 4,2 [83140]
    2. chain 3 [23449]
    3. chain 1 [23447]
  10. 2rs1
    complexed with w84
    1. chain 4,2 [83144]
    2. chain 3 [23458]
    3. chain 1 [23456]
  11. 1rui
    complexed with w84; mutant
    1. chain 4,2 [83120]
    2. chain 3 [23464]
    3. chain 1 [23462]
  12. 1ruf
    mutant
    1. chain 4,2 [83117]
    2. chain 3 [23473]
    3. chain 1 [23471]
  13. 1rue
    complexed with w35; mutant
    1. chain 4,2 [83116]
    2. chain 3 [23470]
    3. chain 1 [23468]
  14. 2rm2
    complexed with w43
    1. chain 4,2 [83141]
    2. chain 3 [23452]
    3. chain 1 [23450]
  15. 1ruh
    complexed with w84; mutant
    1. chain 4,2 [83119]
    2. chain 3 [23461]
    3. chain 1 [23459]
  16. 1hrv
    complexed with sdz
    1. chain 4,2 [83063]
    2. chain 3 [23479]
    3. chain 1 [23477]
  17. 1ruj
    mutant
    1. chain 4,2 [83121]
    2. chain 3 [23500]
    3. chain 1 [23498]
  18. 2rmu
    mutant
    1. chain 4,2 [83142]
    2. chain 3 [23503]
    3. chain 1 [23501]
  19. 1rmu
    complexed with trs; mutant
    1. chain 4,2 [83113]
    2. chain 3 [23506]
    3. chain 1 [23504]
  20. 1hri
    complexed with s57
    1. chain 4,2 [83062]
    2. chain 3 [23476]
    3. chain 1 [23474]
  21. 2r06
    complexed with w35
    1. chain 4,2 [83139]
    2. chain 3 [23494]
    3. chain 1 [23492]
  22. 1rug
    complexed with w35; mutant
    1. chain 4,2 [83118]
    2. chain 3 [23497]
    3. chain 1 [23495]
  23. 2hwb
    complexed with w91; mutant
    1. chain 4,2 [83131]
    2. chain 3 [23509]
    3. chain 1 [23507]
  24. 2r04
    complexed with w71
    1. chain 4,2 [83138]
    2. chain 3 [23488]
    3. chain 1 [23486]
  25. 2rs5
    complexed with w56
    1. chain 4,2 [83146]
    2. chain 3 [23491]
    3. chain 1 [23489]
  26. 2hwc
    complexed with w54; mutant
    1. chain 4,2 [83132]
    2. chain 3 [23512]
    3. chain 1 [23510]
  27. 2rs3
    complexed with w59
    1. chain 4,2 [83145]
    2. chain 3 [23482]
    3. chain 1 [23480]
  28. 1r08
    complexed with w42
    1. chain 4,2 [83109]
    2. chain 3 [23485]
    3. chain 1 [23483]
  29. 1ruc
    complexed with w35; mutant
    1. chain 4,2 [83114]
    2. chain 3 [23515]
    3. chain 1 [23513]
  30. 1rvf
    1. chain 4,2 [83122]
    2. chain 3 [23518]
    3. chain 1 [23516]
2. Human rhinovirus 16, (HRV-16) [TaxId: 31708] [49672] (9)
  1. 1aym
    complexed with dao, myr, zn; mutant
    1. chain 4,2 [83036]
    2. chain 3 [23521]
    3. chain 1 [23519]
  2. 1nd2
    complexed with myr, zn
    1. chain d,b [91809]
    2. chain c [91811]
    3. chain a [91810]
  3. 1qju
    complexed with myr, w01, zn; mutant
    1. chain 4,2 [83105]
    2. chain 3 [23524]
    3. chain 1 [23522]
  4. 1ncr
    complexed with myr, w11, zn
    1. chain d,b [91805]
    2. chain c [91807]
    3. chain a [91806]
  5. 1qjy
    complexed with myr, w03, zn; mutant
    1. chain 4,2 [83107]
    2. chain 3 [23527]
    3. chain 1 [23525]
  6. 1c8m
    complexed with w11, zn
    1. chain 4,2 [83044]
    2. chain 3 [23530]
    3. chain 1 [23528]
  7. 1ayn
    complexed with dao, myr, zn; mutant
    1. chain 4,2 [83037]
    2. chain 3 [23536]
    3. chain 1 [23534]
  8. 1nd3
    complexed with w11, zn
    1. chain d,b [91812]
    2. chain c [91814]
    3. chain a [91813]
  9. 1qjx
    complexed with myr, w02, zn; mutant
    1. chain 4,2 [83106]
    2. chain 3 [23533]
    3. chain 1 [23531]
3. Human rhinovirus A 1A (HRV-1A) [TaxId: 12134] [49673] (4)
  1. 1r1a
    complexed with suc
    1. chain 4,2 [83111]
    2. chain 3 [23539]
    3. chain 1 [23537]
  2. 2hwd
    complexed with w91
    1. chain 4,2 [83133]
    2. chain 3 [23542]
    3. chain 1 [23540]
  3. 2hwf
    complexed with jen
    1. chain 4,2 [83135]
    2. chain 3 [23548]
    3. chain 1 [23546]
  4. 2hwe
    complexed with w54
    1. chain 4,2 [83134]
    2. chain 3 [23545]
    3. chain 1 [23543]
4. Human rhinovirus A 2 (HRV-2) [TaxId: 12130] [49674] (2)
  1. 1fpn
    complexed with dao
    1. chain 4,2 [83053]
    2. chain 3 [23551]
    3. chain 1 [23549]
  2. 1v9u
    complexed with ca, dao
    1. chain 4,2 [100550]
    2. chain 3 [100552]
    3. chain 1 [100551]
5. Human rhinovirus 3, (HRV-3) [TaxId: 44130] [49675] (1)
  1. 1rhi
    complexed with ca
    1. chain 4,2 [83112]
    2. chain 3 [23554]
    3. chain 1 [23552]
Aphthovirus (Foot-and-mouth disease virus) coat proteins [49659]
1. FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110] [49660] (4)
  1. 1qqp
    complexed with idu, sgn
    1. chain 4,2 [83108]
    2. chain 3 [23365]
    3. chain 1 [23363]
  2. 1bbt
    1. chain 4,2 [83039]
    2. chain 3 [23368]
    3. chain 1 [23366]
  3. 1fod
    1. chain 4,2 [83052]
    2. chain 3 [23371]
    3. chain 1 [23369]
  4. 1fmd
    1. chain 4,2 [83051]
    2. chain 3 [23374]
    3. chain 1 [23372]
Theilovirus capsid proteins [49686]
1. Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124] [49687] (2)
  1. 1tme
    1. chain 4,2 [83123]
    2. chain 3 [23575]
    3. chain 1 [23573]
  2. 1tmf
    1. chain 4,2 [83124]
    2. chain 3 [23578]
    3. chain 1 [23576]
Mengo encephalomyocarditis virus coat proteins [49678]
1. Mengovirus [TaxId: 12107] [49679] (2)
  1. 2mev
    complexed with po4
    1. chain 4,2 [83136]
    2. chain 3 [23560]
    3. chain 1 [23558]
  2. 1mec
    complexed with po4
    1. chain 4,2 [83100]
    2. chain 3 [23563]
    3. chain 1 [23561]
Swine vesicular disease virus coat proteins [89225]
1. Swine vesicular disease virus [TaxId: 12075] [89226] (2)
  1. 1oop
    complexed with myr, sph
    1. chain d,b [87203]
    2. chain a [87204]
    3. chain c [87205]
  2. 1mqt
    complexed with spl
    1. chain d,b [91424]
    2. chain a [91425]
    3. chain c [91426]
Insect picorna-like virus coat proteins [49654]
different genetic order of VP segments due to extensive genome shuffling
1. Cricket paralysis virus [TaxId: 12136] [49655] (1)
  1. 1b35
    1. chain b [23334]
    2. chain d,c [83038]
    3. chain a [23333]