Structural Classification of Proteins
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Protein: Nepovirus capsid protein from TRSV (Tobacco ringspot virus) [TaxId: 12282]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Comoviridae-like VP [88636]
    duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains
  6. Protein: Nepovirus capsid protein [49629]
    duplication: cnosists of three very similar domains
  7. Species: TRSV (Tobacco ringspot virus) [TaxId: 12282] [49630]

PDB Entry Domains:

  1. 1a6c picpic
    1. region a:1-176 [23296] picpiclink
    2. region a:177-348 [23297] picpiclink
    3. region a:349-513 [23298] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk