Structural Classification of Proteins
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Family: Comoviridae-like VP

duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Comoviridae-like VP [88636]
    duplication: mature coat protein consists of three similar domains that can be in a single chain or in two separate chains

Protein Domains:

  1. Nepovirus capsid protein [49629]
    duplication: cnosists of three very similar domains
    1. TRSV (Tobacco ringspot virus) [TaxId: 12282] [49630] (1) picpic
  2. Comovirus coat proteins (VP37 and VP23) [49627]
    chain 1 is one-domain VP23; chain 2 is two-domain VP37
    1. CPMV (Cowpea mosaic virus) [TaxId: 12264] [89227] (4) picpic
    2. BPMV (Bean pod mottle virus) [TaxId: 12260] [49628] (3) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk