Structural Classification of Proteins
Fold: Domain of alpha and beta subunits of F1 ATP synthase-like
barrel, closed; n=6, S=8; greek-key
Lineage:
Root:
scop
Class:
All beta proteins
[48724]
Fold:
Domain of alpha and beta subunits of F1 ATP synthase-like
[50614]
barrel, closed; n=6, S=8; greek-key
Superfamilies:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
[50615] (1)
uperfamily
N-terminal domain of alpha and beta subunits of F1 ATP synthase
[50616] (8)
6 domains form a ring structure which contains a barrel, closed; n=24, S=24(?)
F1 ATP synthase alpha subunit, domain 1 [88672]
Cow (Bos taurus)
[TaxId: 9913]
[88673] (18)
SQ
P19483
2jdi
automatically matched to d1bmfc2
complexed with anp, mg
region a:24-94
[145684]
2jdi
automatically matched to d1bmfc2
complexed with anp, mg
region b:24-94
[145687]
2jdi
automatically matched to d1bmfc2
complexed with anp, mg
region c:24-94
[145690]
2ck3
automatically matched to d1bmfc2
complexed with adp, anp, azi, mg, po4
region a:24-94
[145034]
2ck3
automatically matched to d1bmfc2
complexed with adp, anp, azi, mg, po4
region b:24-94
[145037]
2ck3
automatically matched to d1bmfc2
complexed with adp, anp, azi, mg, po4
region c:24-94
[145040]
1w0j
complexed with adp, bef, gol, mo3, mo4, po4
region a:24-94
[108990]
region b:24-94
[108993]
region c:24-94
[108996]
1e79
complexed with adp, atp, cry, glh, mg, so4
region a:19-94
[26434]
region b:19-94
[26435]
region c:19-94
[26436]
1w0k
complexed with adp, gol, mg, po4
region a:24-94
[109009]
region b:24-94
[109012]
region c:24-94
[109015]
1h8e
complexed with adp, alf, gol, mg, so4
region a:19-94
[60739]
region b:24-94
[60742]
region c:19-94
[60745]
1nbm
complexed with adp, atp, mg, po4, tyn
region a:24-94
[26452]
region b:24-94
[26453]
region c:19-94
[26454]
1e1r
complexed with adp, af3, anp, mg, po4
region a:24-94
[26440]
region b:24-94
[26441]
region c:19-94
[26442]
1bmf
complexed with adp, anp, mg
region a:24-94
[26446]
region b:24-94
[26447]
region c:19-94
[26448]
1e1q
complexed with adp, anp, mg, po4
region a:24-94
[26458]
region b:24-94
[26459]
region c:19-94
[26460]
1efr
complexed with adp, anp, app, bal, cpi, mg, tlx
region a:24-94
[26464]
region b:24-94
[26465]
region c:19-94
[26466]
1ohh
complexed with anp, mg
region a:24-94
[87016]
region b:24-94
[87019]
region c:19-94
[87022]
1h8h
complexed with adp, atp, gol, mg, po4
region a:24-94
[60760]
region b:24-94
[60763]
region c:19-94
[60766]
1cow
complexed with adp, anp, aur, mg
region a:24-94
[26470]
region b:24-94
[26471]
region c:19-94
[26472]
Rat (Rattus norvegicus)
[TaxId: 10116]
[88674] (2)
1mab
complexed with adp, atp, mg, po4
region a:10-94
[26476]
2f43
automatically matched to d1maba2
complexed with adp, atp, mg, vo4
region a:23-94
[145132]
Bacillus sp., strain ps3
[TaxId: 1409]
[88675] (1)
1sky
complexed with so4
region b:21-95
[26478]
Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]
[88676] (2)
1fx0
region a:25-96
[60081]
1kmh
complexed with ttx
region a:25-96
[72746]
F1 ATP synthase beta subunit, domain 1 [88677]
Cow (Bos taurus)
[TaxId: 9913]
[88678] (12)
SQ
P00829
1w0j
complexed with adp, bef, gol, mo3, mo4, po4
region d:9-81
[108999]
region e:9-81
[109002]
region f:9-81
[109005]
1e79
complexed with adp, atp, cry, glh, mg, so4
region d:9-81
[26437]
region e:9-81
[26438]
region f:9-81
[26439]
1w0k
complexed with adp, gol, mg, po4
region d:9-81
[109018]
region e:9-81
[109021]
region f:9-81
[109024]
1h8e
complexed with adp, alf, gol, mg, so4
region d:9-81
[60748]
region e:9-81
[60751]
region f:9-81
[60754]
1nbm
complexed with adp, atp, mg, po4, tyn
region d:9-81
[26455]
region e:9-81
[26456]
region f:9-81
[26457]
1e1r
complexed with adp, af3, anp, mg, po4
region d:9-81
[26443]
region e:9-81
[26444]
region f:9-81
[26445]
1bmf
complexed with adp, anp, mg
region d:9-81
[26449]
region e:9-81
[26450]
region f:9-81
[26451]
1e1q
complexed with adp, anp, mg, po4
region d:9-81
[26461]
region e:9-81
[26462]
region f:9-81
[26463]
1efr
complexed with adp, anp, app, bal, cpi, mg, tlx
region d:9-81
[26467]
region e:9-81
[26468]
region f:9-81
[26469]
1ohh
complexed with anp, mg
region d:9-81
[87025]
region e:9-81
[87028]
region f:9-81
[87031]
1h8h
complexed with adp, atp, gol, mg, po4
region d:9-81
[60769]
region e:9-81
[60772]
region f:9-81
[60775]
1cow
complexed with adp, anp, aur, mg
region d:9-81
[26473]
region e:9-81
[26474]
region f:9-81
[26475]
Rat (Rattus norvegicus)
[TaxId: 10116]
[88679] (8)
2jdi
automatically matched to d1mabb2
complexed with anp, mg
region d:10-81
[138264]
2jdi
automatically matched to d1mabb2
complexed with anp, mg
region e:10-81
[138267]
2jdi
automatically matched to d1mabb2
complexed with anp, mg
region f:10-81
[138270]
2ck3
automatically matched to d1mabb2
complexed with adp, anp, azi, mg, po4
region d:10-81
[130554]
2ck3
automatically matched to d1mabb2
complexed with adp, anp, azi, mg, po4
region e:10-81
[130557]
2ck3
automatically matched to d1mabb2
complexed with adp, anp, azi, mg, po4
region f:10-81
[130560]
1mab
complexed with adp, atp, mg, po4
region b:1-81
[26477]
2f43
automatically matched to d1mabb2
complexed with adp, atp, mg, vo4
region b:1-81
[132909]
Bacillus sp., strain ps3
[TaxId: 1409]
[88680] (1)
1sky
complexed with so4
region e:1-82
[26479]
Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]
[88681] (2)
1fx0
region b:19-97
[60084]
1kmh
complexed with ttx
region b:19-97
[72749]
Alanine racemase C-terminal domain-like
[50621] (2)
the barrel is decorated with additional structures
uperfamily
Alanine racemase
[88682] (3)
Alanine racemase [50623]
Bacillus stearothermophilus
[TaxId: 1422]
[50624] (8)
1bd0
complexed with in5
region a:2-11,a:245-382
[26480]
region b:2-11,b:245-381
[26481]
1sft
complexed with act, plp
region a:2-11,a:245-383
[26482]
region b:2-11,b:245-381
[26483]
1l6f
complexed with kcx, pdl
region a:2-11,a:245-383
[73609]
region b:2-11,b:245-383
[73611]
1l6g
complexed with kcx, pdd
region a:2-11,a:245-383
[73613]
region b:2-11,b:245-383
[73615]
2sfp
complexed with plp, ppi
region a:3-11,a:245-381
[26484]
region b:3-11,b:245-381
[26485]
1ftx
complexed with in5, kcx
region a:2-11,a:245-381
[76191]
region b:2-11,b:245-381
[76193]
1niu
complexed with scp
region a:2-11,a:245-383
[91893]
region b:2-11,b:245-381
[91895]
1epv
complexed with kcx, scp
region a:2-11,a:245-383
[76146]
region b:2-11,b:245-381
[76148]
Pseudomonas aeruginosa
[TaxId: 287]
[110243] (1)
SQ
Q9HTQ2
1rcq
complexed with plp
region a:1-7,a:234-357
[104882]
Streptomyces lavendulae
[TaxId: 1914]
[110244] (3)
SQ
Q65YW7
1vfs
complexed with cl, scp
region a:4-12,a:250-385
[108584]
region b:1003-1012,b:1250-1384
[108586]
1vfh
complexed with plp
region a:3-12,a:250-384
[108574]
1vft
complexed with cl, scp
region a:4-12,a:250-385
[118630]
region b:1005-1012,b:1250-1384
[108590]
Eukaryotic ODC-like
[88683] (6)
barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel
Eukaryotic ornithine decarboxylase (ODC) [50625]
Human (Homo sapiens)
[TaxId: 9606]
[50626] (1)
1d7k
region a:7-43,a:284-427
[26486]
region b:7-43,b:284-421
[26487]
Mouse (Mus musculus)
[TaxId: 10090]
[50627] (1)
7odc
complexed with plp; mutant
region a:2-43,a:284-418
[26488]
Trypanosoma brucei
[TaxId: 5691]
[50628] (5)
SQ
P07805
2tod
region a:37-43,a:284-410
[26489]
region b:37-43,b:284-410
[26490]
region c:37-43,c:284-410
[26491]
region d:37-43,d:284-410
[26492]
1f3t
complexed with plp, put
region a:14-43,a:284-422
[26493]
region b:14-43,b:284-422
[26494]
region c:14-43,c:284-409
[26495]
region d:14-43,d:284-409
[26496]
1szr
complexed with orx, plg, pxp; mutant
region a:37-43,a:284-408
[112174]
region b:37-43,b:284-408
[112176]
region c:37-43,c:284-408
[112178]
region d:37-43,d:284-408
[112180]
1njj
complexed with get, orx
region a:20-43,a:284-414
[91905]
region b:20-43,b:284-409
[91907]
region c:14-43,c:284-409
[91909]
region d:20-43,d:284-409
[91911]
1qu4
region a:35-43,a:284-411
[26497]
region b:35-43,b:284-411
[26498]
region c:35-43,c:284-411
[26499]
region d:35-43,d:284-411
[26500]
Diaminopimelate decarboxylase LysA [89350]
Mycobacterium tuberculosis
[TaxId: 1773]
[89351] (2)
1hkv
complexed with lys, plp
region a:2-45,a:311-447
[83559]
region b:2-45,b:311-447
[83561]
1hkw
complexed with mse, so4
region a:2-45,a:311-447
[83563]
region b:3-45,b:311-446
[83565]
Escherichia coli
[TaxId: 562]
[101820] (2)
1knw
complexed with li, mes, plp, sul
region a:2-31,a:279-422
[90969]
1ko0
complexed with lys, plp
region a:2-31,a:279-420
[90971]
Archaeon Methanococcus jannaschii
[TaxId: 2190]
[110245] (2)
SQ
Q58497
1twi
Structural genomics target
complexed with lys, mg, plp
region a:15-49,a:314-448
[107399]
region b:15-49,b:314-448
[107401]
region c:15-49,c:314-448
[107403]
region d:15-49,d:314-448
[107405]
1tuf
Structural genomics target
complexed with az1
region a:15-49,a:314-448
[107335]
region b:15-49,b:314-448
[107337]
Aminopeptidase/glucanase lid domain
[101821] (1)
uperfamily
Aminopeptidase/glucanase lid domain
[101822] (7)
Hypothetical protein YsdC [101823]
Bacillus subtilis
[TaxId: 1423]
[101824] (1)
1vhe
structural genomics
complexed with zn
region a:73-162
[100669]
Putative endoglucanase TM1048 [101825]
Thermotoga maritima
[TaxId: 2336]
[101826] (1)
1vho
structural genomics
complexed with cac, so4
region a:70-152
[100694]
Frv operon protein FrvX [117239]
Pyrococcus horikoshii
[TaxId: 53953]
[117240] (3)
SQ
O59196
# PH1527
1y0y
automatically matched to 1Y0R A:73-163
complexed with ati, zn
region a:73-163
[122514]
1y0r
complexed with ars, zn
region a:73-163
[122510]
1xfo
complexed with zn
region a:73-163
[115265]
region b:73-163
[115267]
region c:73-163
[115269]
region d:73-163
[115271]
Probable aminopeptidase ApeA [117241]
Borrelia burgdorferi
[TaxId: 139]
[117242] (1)
SQ
Q45055
; BB0366
1y7e
Structural genomics target
region a:101-233
[116532]
Deblocking aminopeptidase YhfE [141387]
Bacillus cereus
[TaxId: 1396]
[141388] (16)
SQ
Q81HB5
74-186
BC0901
2gre
complexed with so4
region a:74-186
[135528]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region b:74-186
[135530]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region c:74-186
[135532]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region d:74-186
[135534]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region e:74-186
[135536]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region f:74-186
[135538]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region g:74-186
[135540]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region h:74-186
[135542]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region i:74-186
[135544]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region j:74-186
[135546]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region k:74-186
[135548]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region l:74-186
[135550]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region m:74-186
[135552]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region n:74-186
[135554]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region o:74-186
[135556]
2gre
automatically matched to 2GRE A:74-186
complexed with so4
region p:74-186
[135558]
Aminopeptidase YpdE [141389]
Shigella flexneri
[TaxId: 623]
[141390] (6)
SQ
Q83K87
67-147
hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
1ylo
complexed with zn
region a:67-147
[123659]
1ylo
automatically matched to 1YLO A:67-147
complexed with zn
region b:67-147
[123661]
1ylo
automatically matched to 1YLO A:67-147
complexed with zn
region c:67-147
[123663]
1ylo
automatically matched to 1YLO A:67-147
complexed with zn
region d:67-147
[123665]
1ylo
automatically matched to 1YLO A:67-147
complexed with zn
region e:67-147
[123667]
1ylo
automatically matched to 1YLO A:67-147
complexed with zn
region f:67-147
[123669]
Endoglucanase TM1049 [141391]
Thermotoga maritima
[TaxId: 2336]
[141392] (1)
SQ
Q9X0D9
65-148
2fvg
complexed with edo
region a:65-148
[134201]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk