Structural Classification of Proteins

Superfamily: Alanine racemase C-terminal domain-like

: the barrel is decorated with additional structures
uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Domain of alpha and beta subunits of F1 ATP synthase-like [50614]
barrel, closed; n=6, S=8; greek-key
Superfamily: Alanine racemase C-terminal domain-like [50621]
the barrel is decorated with additional structures
uperfamily

Families:

Alanine racemase [88682] (3)
1. Alanine racemase [50623]
  1. Bacillus stearothermophilus [TaxId: 1422] [50624] (8)
    1. 1bd0
      complexed with in5
      1. region a:2-11,a:245-382 [26480]
      2. region b:2-11,b:245-381 [26481]
    2. 1sft
      complexed with act, plp
      1. region a:2-11,a:245-383 [26482]
      2. region b:2-11,b:245-381 [26483]
    3. 1l6f
      complexed with kcx, pdl
      1. region a:2-11,a:245-383 [73609]
      2. region b:2-11,b:245-383 [73611]
    4. 1l6g
      complexed with kcx, pdd
      1. region a:2-11,a:245-383 [73613]
      2. region b:2-11,b:245-383 [73615]
    5. 2sfp
      complexed with plp, ppi
      1. region a:3-11,a:245-381 [26484]
      2. region b:3-11,b:245-381 [26485]
    6. 1ftx
      complexed with in5, kcx
      1. region a:2-11,a:245-381 [76191]
      2. region b:2-11,b:245-381 [76193]
    7. 1niu
      complexed with scp
      1. region a:2-11,a:245-383 [91893]
      2. region b:2-11,b:245-381 [91895]
    8. 1epv
      complexed with kcx, scp
      1. region a:2-11,a:245-383 [76146]
      2. region b:2-11,b:245-381 [76148]
  2. Pseudomonas aeruginosa [TaxId: 287] [110243] (1)
    SQ Q9HTQ2
    1. 1rcq
      complexed with plp
      1. region a:1-7,a:234-357 [104882]
  3. Streptomyces lavendulae [TaxId: 1914] [110244] (3)
    SQ Q65YW7
    1. 1vfs
      complexed with cl, scp
      1. region a:4-12,a:250-385 [108584]
      2. region b:1003-1012,b:1250-1384 [108586]
    2. 1vfh
      complexed with plp
      1. region a:3-12,a:250-384 [108574]
    3. 1vft
      complexed with cl, scp
      1. region a:4-12,a:250-385 [118630]
      2. region b:1005-1012,b:1250-1384 [108590]
Eukaryotic ODC-like [88683] (6)
barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel
1. Eukaryotic ornithine decarboxylase (ODC) [50625]
  1. Human (Homo sapiens) [TaxId: 9606] [50626] (1)
    1. 1d7k
      1. region a:7-43,a:284-427 [26486]
      2. region b:7-43,b:284-421 [26487]
  2. Mouse (Mus musculus) [TaxId: 10090] [50627] (1)
    1. 7odc
      complexed with plp; mutant
      1. region a:2-43,a:284-418 [26488]
  3. Trypanosoma brucei [TaxId: 5691] [50628] (5)
    SQ P07805
    1. 2tod
      1. region a:37-43,a:284-410 [26489]
      2. region b:37-43,b:284-410 [26490]
      3. region c:37-43,c:284-410 [26491]
      4. region d:37-43,d:284-410 [26492]
    2. 1f3t
      complexed with plp, put
      1. region a:14-43,a:284-422 [26493]
      2. region b:14-43,b:284-422 [26494]
      3. region c:14-43,c:284-409 [26495]
      4. region d:14-43,d:284-409 [26496]
    3. 1szr
      complexed with orx, plg, pxp; mutant
      1. region a:37-43,a:284-408 [112174]
      2. region b:37-43,b:284-408 [112176]
      3. region c:37-43,c:284-408 [112178]
      4. region d:37-43,d:284-408 [112180]
    4. 1njj
      complexed with get, orx
      1. region a:20-43,a:284-414 [91905]
      2. region b:20-43,b:284-409 [91907]
      3. region c:14-43,c:284-409 [91909]
      4. region d:20-43,d:284-409 [91911]
    5. 1qu4
      1. region a:35-43,a:284-411 [26497]
      2. region b:35-43,b:284-411 [26498]
      3. region c:35-43,c:284-411 [26499]
      4. region d:35-43,d:284-411 [26500]
2. Diaminopimelate decarboxylase LysA [89350]
  1. Mycobacterium tuberculosis [TaxId: 1773] [89351] (2)
    1. 1hkv
      complexed with lys, plp
      1. region a:2-45,a:311-447 [83559]
      2. region b:2-45,b:311-447 [83561]
    2. 1hkw
      complexed with mse, so4
      1. region a:2-45,a:311-447 [83563]
      2. region b:3-45,b:311-446 [83565]
  2. Escherichia coli [TaxId: 562] [101820] (2)
    1. 1knw
      complexed with li, mes, plp, sul
      1. region a:2-31,a:279-422 [90969]
    2. 1ko0
      complexed with lys, plp
      1. region a:2-31,a:279-420 [90971]
  3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110245] (2)
    SQ Q58497
    1. 1twi
      Structural genomics target
      complexed with lys, mg, plp
      1. region a:15-49,a:314-448 [107399]
      2. region b:15-49,b:314-448 [107401]
      3. region c:15-49,c:314-448 [107403]
      4. region d:15-49,d:314-448 [107405]
    2. 1tuf
      Structural genomics target
      complexed with az1
      1. region a:15-49,a:314-448 [107335]
      2. region b:15-49,b:314-448 [107337]