Structural Classification of Proteins
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Family: Eukaryotic ODC-like

barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Domain of alpha and beta subunits of F1 ATP synthase-like [50614]
    barrel, closed; n=6, S=8; greek-key
  4. Superfamily: Alanine racemase C-terminal domain-like [50621]
    the barrel is decorated with additional structures
    link to SUPERFAMILY database - Superfamily
  5. Family: Eukaryotic ODC-like [88683]
    barrel is open with strands 4 and 5 having swapped their positions, compared to the alanine racemase barrel

Protein Domains:

  1. Eukaryotic ornithine decarboxylase (ODC) [50625]
    1. Human (Homo sapiens) [TaxId: 9606] [50626] (1)
      1. 1d7k picpicxref
        1. region a:7-43,a:284-427 [26486] picpiclink
        2. region b:7-43,b:284-421 [26487] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [50627] (1)
      1. 7odc picpicxref
        complexed with plp; mutant
        1. region a:2-43,a:284-418 [26488] picpiclink
    3. Trypanosoma brucei [TaxId: 5691] [50628] (5)
      SQ P07805
      1. 2tod picpicxref
        1. region a:37-43,a:284-410 [26489] picpiclink
        2. region b:37-43,b:284-410 [26490] picpiclink
        3. region c:37-43,c:284-410 [26491] picpiclink
        4. region d:37-43,d:284-410 [26492] picpiclink
      2. 1f3t picpicxref
        complexed with plp, put
        1. region a:14-43,a:284-422 [26493] picpiclink
        2. region b:14-43,b:284-422 [26494] picpiclink
        3. region c:14-43,c:284-409 [26495] picpiclink
        4. region d:14-43,d:284-409 [26496] picpiclink
      3. 1szr picpicxref
        complexed with orx, plg, pxp; mutant
        1. region a:37-43,a:284-408 [112174] picpiclink
        2. region b:37-43,b:284-408 [112176] picpiclink
        3. region c:37-43,c:284-408 [112178] picpiclink
        4. region d:37-43,d:284-408 [112180] picpiclink
      4. 1njj picpicxref
        complexed with get, orx
        1. region a:20-43,a:284-414 [91905] picpiclink
        2. region b:20-43,b:284-409 [91907] picpiclink
        3. region c:14-43,c:284-409 [91909] picpiclink
        4. region d:20-43,d:284-409 [91911] picpiclink
      5. 1qu4 picpicxref
        1. region a:35-43,a:284-411 [26497] picpiclink
        2. region b:35-43,b:284-411 [26498] picpiclink
        3. region c:35-43,c:284-411 [26499] picpiclink
        4. region d:35-43,d:284-411 [26500] picpiclink
  2. Diaminopimelate decarboxylase LysA [89350]
    1. Mycobacterium tuberculosis [TaxId: 1773] [89351] (2)
      1. 1hkv picpicxref
        complexed with lys, plp
        1. region a:2-45,a:311-447 [83559] picpiclink
        2. region b:2-45,b:311-447 [83561] picpiclink
      2. 1hkw picpicxref
        complexed with mse, so4
        1. region a:2-45,a:311-447 [83563] picpiclink
        2. region b:3-45,b:311-446 [83565] picpiclink
    2. Escherichia coli [TaxId: 562] [101820] (2)
      1. 1knw picpicxref
        complexed with li, mes, plp, sul
        1. region a:2-31,a:279-422 [90969] picpiclink
      2. 1ko0 picpicxref
        complexed with lys, plp
        1. region a:2-31,a:279-420 [90971] picpiclink
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110245] (2)
      SQ Q58497
      1. 1twi picpicxref
        Structural genomics target
        complexed with lys, mg, plp
        1. region a:15-49,a:314-448 [107399] picpiclink
        2. region b:15-49,b:314-448 [107401] picpiclink
        3. region c:15-49,c:314-448 [107403] picpiclink
        4. region d:15-49,d:314-448 [107405] picpiclink
      2. 1tuf picpicxref
        Structural genomics target
        complexed with az1
        1. region a:15-49,a:314-448 [107335] picpiclink
        2. region b:15-49,b:314-448 [107337] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk