Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: MurD-like peptide ligases, catalytic domain

has extra strand located between strands 1 and 2
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribokinase-like [53612]
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. Superfamily: MurD-like peptide ligases, catalytic domain [53623]
    has extra strand located between strands 1 and 2
    link to SUPERFAMILY database - Superfamily

Families:

  1. MurCDEF [53624] (5)
    1. UDP-N-acetylmuramate-alanine ligase MurC [82520]
      1. Thermotoga maritima [TaxId: 2336] [82521] (1)
        TM0231
        1. 1j6u picpicxrefxref
          structural genomics
          complexed with mse
          1. region a:89-295 [77096] picpiclink
      2. Haemophilus influenzae [TaxId: 727] [89776] (4)
        1. 1p3d picpicxrefxref
          complexed with anp, mn, mse, uma
          1. region a:107-321 [87730] picpiclink
          2. region b:107-321 [87733] picpiclink
        2. 1p31 picpicxrefxref
          complexed with epu, mg, mse
          1. region a:107-321 [87724] picpiclink
          2. region b:107-321 [87727] picpiclink
        3. 1gqy picpicxrefxref
          complexed with acp, mg
          1. region a:107-321 [83307] picpiclink
          2. region b:107-321 [83310] picpiclink
        4. 1gqq picpicxrefxref
          1. region a:107-321 [83301] picpiclink
          2. region b:107-321 [83304] picpiclink
    2. UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625]
      1. Escherichia coli [TaxId: 562] [53626] (11)
        1. 2jfg picpicxrefxref
          automatically matched to d1e0da3
          complexed with adp, so4, uma
          1. region a:94-297 [138308] picpiclink
        2. 2uag picpicxrefxref
          complexed with adp, mg, uma
          1. region a:94-297 [34954] picpiclink
        3. 4uag picpicxrefxref
          complexed with so4, uag, unx
          1. region a:94-297 [34955] picpiclink
        4. 3uag picpicxrefxref
          complexed with adp, epe, mn, uma
          1. region a:94-297 [34956] picpiclink
        5. 2jff picpicxrefxref
          automatically matched to d1e0da3
          complexed with lk2, so4
          1. region a:94-297 [138305] picpiclink
        6. 2uup picpicxrefxref
          automatically matched to d1e0da3
          complexed with lk4, so4
          1. region a:94-297 [152202] picpiclink
        7. 1uag picpicxrefxref
          complexed with so4, uma
          1. region a:94-297 [34957] picpiclink
        8. 1eeh picpicxrefxref
          complexed with uma
          1. region a:94-297 [34958] picpiclink
        9. 2jfh picpicxrefxref
          automatically matched to d1e0da3
          complexed with lk1, so4
          1. region a:94-297 [138311] picpiclink
        10. 2uuo picpicxrefxref
          automatically matched to d1e0da3
          complexed with lk3, so4
          1. region a:94-297 [152199] picpiclink
        11. 1e0d picpicxrefxref
          complexed with so4
          1. region a:94-297 [34959] picpiclink
    3. UDP-N-acetylmuramyl tripeptide synthetase MurE [64150]
      1. Escherichia coli [TaxId: 562] [64151] (1)
        1. 1e8c picpicxrefxref
          complexed with api, cl, uag
          1. region a:104-337 [59379] picpiclink
          2. region b:104-337 [59382] picpiclink
    4. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [53627]
      1. Escherichia coli [TaxId: 562] [53628] (1)
        1. 1gg4 picpicxrefxref
          1. region a:99-312 [58986] picpiclink
          2. region b:599-812 [58988] picpiclink
  2. Folylpolyglutamate synthetase [53629] (2)
    1. Folylpolyglutamate synthetase [53630]
      1. Lactobacillus casei [TaxId: 1582] [53631] (7)
        1. 2gc6 picpicxref
          automatically matched to d1fgs_2
          complexed with lcx, so4; mutant
          1. region a:1-296 [134953] picpiclink
        2. 2gc5 picpicxref
          automatically matched to d1fgs_2
          complexed with lcx, so4; mutant
          1. region a:1-296 [134951] picpiclink
        3. 1jbw picpicxref
          complexed with acq, mg, tmf
          1. region a:1-296 [62861] picpiclink
        4. 1jbv picpicxref
          complexed with acp, mg
          1. region a:1-296 [62859] picpiclink
        5. 2gcb picpicxref
          automatically matched to d1fgs_2
          mutant
          1. region a:1-296 [134976] picpiclink
        6. 2gca picpicxref
          automatically matched to d1fgs_2
          1. region a:1-296 [134974] picpiclink
        7. 1fgs picpicxref
          complexed with mg, pop
          1. region a:1-296 [34962] picpiclink
      2. Thermotoga maritima [TaxId: 2336] [102644] (1)
        TM0166
        1. 1o5z picpicxref
          structural genomics
          complexed with cl, so4, unl
          1. region a:-2-293 [92531] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk