Structural Classification of Proteins
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Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribokinase-like [53612]
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. Superfamily: MurD-like peptide ligases, catalytic domain [53623]
    has extra strand located between strands 1 and 2
    link to SUPERFAMILY database - Superfamily
  5. Family: MurCDEF [53624]
  6. Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625]
  7. Species: Escherichia coli [TaxId: 562] [53626]

PDB Entry Domains:

  1. 2jfg picpicxrefxref
    automatically matched to d1e0da3
    complexed with adp, so4, uma
    1. region a:94-297 [138308] picpiclink
  2. 2uag picpicxrefxref
    complexed with adp, mg, uma
    1. region a:94-297 [34954] picpiclink
  3. 4uag picpicxrefxref
    complexed with so4, uag, unx
    1. region a:94-297 [34955] picpiclink
  4. 3uag picpicxrefxref
    complexed with adp, epe, mn, uma
    1. region a:94-297 [34956] picpiclink
  5. 2jff picpicxrefxref
    automatically matched to d1e0da3
    complexed with lk2, so4
    1. region a:94-297 [138305] picpiclink
  6. 2uup picpicxrefxref
    automatically matched to d1e0da3
    complexed with lk4, so4
    1. region a:94-297 [152202] picpiclink
  7. 1uag picpicxrefxref
    complexed with so4, uma
    1. region a:94-297 [34957] picpiclink
  8. 1eeh picpicxrefxref
    complexed with uma
    1. region a:94-297 [34958] picpiclink
  9. 2jfh picpicxrefxref
    automatically matched to d1e0da3
    complexed with lk1, so4
    1. region a:94-297 [138311] picpiclink
  10. 2uuo picpicxrefxref
    automatically matched to d1e0da3
    complexed with lk3, so4
    1. region a:94-297 [152199] picpiclink
  11. 1e0d picpicxrefxref
    complexed with so4
    1. region a:94-297 [34959] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk