Structural Classification of Proteins
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Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: MurD-like peptide ligases, peptide-binding domain [53243]
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest
  4. Superfamily: MurD-like peptide ligases, peptide-binding domain [53244]
    link to SUPERFAMILY database - Superfamily
  5. Family: MurCDEF C-terminal domain [53245]
  6. Protein: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53246]
  7. Species: Escherichia coli [TaxId: 562] [53247]

PDB Entry Domains:

  1. 2jfg picpicxrefxref
    automatically matched to d1e0da2
    complexed with adp, so4, uma
    1. region a:298-437 [138307] picpiclink
  2. 2uag picpicxrefxref
    complexed with adp, mg, uma
    1. region a:298-437 [33951] picpiclink
  3. 4uag picpicxrefxref
    complexed with so4, uag, unx
    1. region a:298-437 [33952] picpiclink
  4. 3uag picpicxrefxref
    complexed with adp, epe, mn, uma
    1. region a:298-437 [33953] picpiclink
  5. 2jff picpicxrefxref
    automatically matched to d1e0da2
    complexed with lk2, so4
    1. region a:298-437 [138304] picpiclink
  6. 2uup picpicxrefxref
    automatically matched to d1e0da2
    complexed with lk4, so4
    1. region a:298-437 [152201] picpiclink
  7. 1uag picpicxrefxref
    complexed with so4, uma
    1. region a:298-437 [33954] picpiclink
  8. 1eeh picpicxrefxref
    complexed with uma
    1. region a:298-437 [33955] picpiclink
  9. 2jfh picpicxrefxref
    automatically matched to d1e0da2
    complexed with lk1, so4
    1. region a:298-437 [138310] picpiclink
  10. 2uuo picpicxrefxref
    automatically matched to d1e0da2
    complexed with lk3, so4
    1. region a:298-437 [152198] picpiclink
  11. 1e0d picpicxrefxref
    complexed with so4
    1. region a:298-437 [33956] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk