Structural Classification of Proteins
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Family: MurCDEF

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribokinase-like [53612]
    core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
    potential superfamily: members of this fold have similar functions but different ATP-binding sites
  4. Superfamily: MurD-like peptide ligases, catalytic domain [53623]
    has extra strand located between strands 1 and 2
    link to SUPERFAMILY database - Superfamily
  5. Family: MurCDEF [53624]

Protein Domains:

  1. UDP-N-acetylmuramate-alanine ligase MurC [82520]
    1. Thermotoga maritima [TaxId: 2336] [82521] (1)
      TM0231
      1. 1j6u picpicxrefxref
        structural genomics
        complexed with mse
        1. region a:89-295 [77096] picpiclink
    2. Haemophilus influenzae [TaxId: 727] [89776] (4)
      1. 1p3d picpicxrefxref
        complexed with anp, mn, mse, uma
        1. region a:107-321 [87730] picpiclink
        2. region b:107-321 [87733] picpiclink
      2. 1p31 picpicxrefxref
        complexed with epu, mg, mse
        1. region a:107-321 [87724] picpiclink
        2. region b:107-321 [87727] picpiclink
      3. 1gqy picpicxrefxref
        complexed with acp, mg
        1. region a:107-321 [83307] picpiclink
        2. region b:107-321 [83310] picpiclink
      4. 1gqq picpicxrefxref
        1. region a:107-321 [83301] picpiclink
        2. region b:107-321 [83304] picpiclink
  2. UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53625]
    1. Escherichia coli [TaxId: 562] [53626] (11)
      1. 2jfg picpicxrefxref
        automatically matched to d1e0da3
        complexed with adp, so4, uma
        1. region a:94-297 [138308] picpiclink
      2. 2uag picpicxrefxref
        complexed with adp, mg, uma
        1. region a:94-297 [34954] picpiclink
      3. 4uag picpicxrefxref
        complexed with so4, uag, unx
        1. region a:94-297 [34955] picpiclink
      4. 3uag picpicxrefxref
        complexed with adp, epe, mn, uma
        1. region a:94-297 [34956] picpiclink
      5. 2jff picpicxrefxref
        automatically matched to d1e0da3
        complexed with lk2, so4
        1. region a:94-297 [138305] picpiclink
      6. 2uup picpicxrefxref
        automatically matched to d1e0da3
        complexed with lk4, so4
        1. region a:94-297 [152202] picpiclink
      7. 1uag picpicxrefxref
        complexed with so4, uma
        1. region a:94-297 [34957] picpiclink
      8. 1eeh picpicxrefxref
        complexed with uma
        1. region a:94-297 [34958] picpiclink
      9. 2jfh picpicxrefxref
        automatically matched to d1e0da3
        complexed with lk1, so4
        1. region a:94-297 [138311] picpiclink
      10. 2uuo picpicxrefxref
        automatically matched to d1e0da3
        complexed with lk3, so4
        1. region a:94-297 [152199] picpiclink
      11. 1e0d picpicxrefxref
        complexed with so4
        1. region a:94-297 [34959] picpiclink
  3. UDP-N-acetylmuramyl tripeptide synthetase MurE [64150]
    1. Escherichia coli [TaxId: 562] [64151] (1)
      1. 1e8c picpicxrefxref
        complexed with api, cl, uag
        1. region a:104-337 [59379] picpiclink
        2. region b:104-337 [59382] picpiclink
  4. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [53627]
    1. Escherichia coli [TaxId: 562] [53628] (1)
      1. 1gg4 picpicxrefxref
        1. region a:99-312 [58986] picpiclink
        2. region b:599-812 [58988] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk