Structural Classification of Proteins
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Family: Aminoacid dehydrogenase-like, C-terminal domain

extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: Aminoacid dehydrogenase-like, C-terminal domain [51883]
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein Domains:

  1. Glutamate dehydrogenase [51884]
    1. Clostridium symbiosum [TaxId: 1512] [51885] (4)
      1. 1bgv picpicxref
        1. region a:195-449 [30217] picpiclink
      2. 1k89 picpicxref
        mutant
        1. region a:195-449 [30218] picpiclink
      3. 1hrd picpicxref
        1. region a:195-449 [30219] picpiclink
        2. region b:195-449 [30220] picpiclink
        3. region c:195-449 [30221] picpiclink
      4. 1aup picpicxref
        mutant
        1. region a:205-449 [30222] picpiclink
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [51886] (1)
      1. 1gtm picpicxref
        complexed with so4
        1. region a:181-419 [30223] picpiclink
        2. region b:181-419 [30224] picpiclink
        3. region c:181-419 [30225] picpiclink
    3. Archaeon Thermococcus profundus [TaxId: 49899] [63943] (1)
      1. 1euz picpicxref
        complexed with so4
        1. region a:181-419 [59513] picpiclink
        2. region b:181-419 [59515] picpiclink
        3. region c:181-419 [59517] picpiclink
        4. region d:181-419 [59519] picpiclink
        5. region e:181-419 [59521] picpiclink
        6. region f:181-419 [59523] picpiclink
    4. Archaeon Thermococcus litoralis [TaxId: 2265] [51887] (1)
      1. 1bvu picpicxref
        1. region a:181-418 [30226] picpiclink
        2. region b:181-418 [30227] picpiclink
        3. region c:181-418 [30228] picpiclink
        4. region d:181-418 [30229] picpiclink
        5. region e:181-418 [30230] picpiclink
        6. region f:181-418 [30231] picpiclink
    5. Thermotoga maritima [TaxId: 2336] [51888] (3)
      1. 1b26 picpicxref
        1. region a:179-412 [30232] picpiclink
        2. region b:179-412 [30233] picpiclink
        3. region c:179-412 [30234] picpiclink
        4. region d:179-412 [30235] picpiclink
        5. region e:179-412 [30236] picpiclink
        6. region f:179-412 [30237] picpiclink
      2. 2tmg picpicxref
        1. region a:179-411 [30238] picpiclink
        2. region b:179-411 [30239] picpiclink
        3. region c:179-411 [30240] picpiclink
        4. region d:179-411 [30241] picpiclink
        5. region e:179-411 [30242] picpiclink
        6. region f:179-411 [30243] picpiclink
      3. 1b3b picpicxref
        1. region a:179-412 [30244] picpiclink
        2. region b:179-412 [30245] picpiclink
        3. region c:179-412 [30246] picpiclink
        4. region d:179-412 [30247] picpiclink
        5. region e:179-412 [30248] picpiclink
        6. region f:179-412 [30249] picpiclink
    6. Cow (Bos taurus) [TaxId: 9913] [51889] (5)
      1. 1hwx picpicxref
        complexed with glu, gtp, nai
        1. region a:209-501 [30250] picpiclink
        2. region b:209-501 [30251] picpiclink
        3. region c:209-501 [30252] picpiclink
        4. region d:209-501 [30253] picpiclink
        5. region e:209-501 [30254] picpiclink
        6. region f:209-501 [30255] picpiclink
      2. 1nr7 picpicxref
        1. region a:209-501 [86095] picpiclink
        2. region b:209-501 [86097] picpiclink
        3. region c:209-501 [86099] picpiclink
        4. region d:209-501 [86101] picpiclink
        5. region e:209-501 [86103] picpiclink
        6. region f:209-501 [86105] picpiclink
        7. region g:209-501 [86107] picpiclink
        8. region h:209-501 [86109] picpiclink
        9. region i:209-501 [86111] picpiclink
        10. region j:209-501 [86113] picpiclink
        11. region k:209-501 [86115] picpiclink
        12. region l:209-501 [86117] picpiclink
      3. 1hwz picpicxref
        complexed with glu, gtp, ndp
        1. region a:209-501 [30256] picpiclink
        2. region b:209-501 [30257] picpiclink
        3. region c:209-501 [30258] picpiclink
        4. region d:209-501 [30259] picpiclink
        5. region e:209-501 [30260] picpiclink
        6. region f:209-501 [30261] picpiclink
      4. 1hwy picpicxref
        complexed with akg, nad, po4
        1. region a:209-501 [30262] picpiclink
        2. region b:209-501 [30263] picpiclink
        3. region c:209-501 [30264] picpiclink
        4. region d:209-501 [30265] picpiclink
        5. region e:209-501 [30266] picpiclink
        6. region f:209-501 [30267] picpiclink
      5. 1nqt picpicxref
        complexed with adp
        1. region a:209-501 [86052] picpiclink
        2. region b:209-501 [86054] picpiclink
        3. region c:209-501 [86056] picpiclink
        4. region d:209-501 [86058] picpiclink
        5. region e:209-501 [86060] picpiclink
        6. region f:209-501 [86062] picpiclink
        7. region g:209-501 [86064] picpiclink
        8. region h:209-501 [86066] picpiclink
        9. region i:209-501 [86068] picpiclink
        10. region j:209-501 [86070] picpiclink
        11. region k:209-501 [86072] picpiclink
        12. region l:209-501 [86074] picpiclink
    7. Human (Homo sapiens) [TaxId: 9606] [75115] (2)
      1. 1l1f picpicxref
        1. region a:213-505 [73456] picpiclink
        2. region b:213-505 [73458] picpiclink
        3. region c:213-505 [73460] picpiclink
        4. region d:213-505 [73462] picpiclink
        5. region e:213-505 [73464] picpiclink
        6. region f:213-505 [73466] picpiclink
      2. 1nr1 picpicxref
        mutant
        1. region a:213-505 [86080] picpiclink
        2. region b:213-505 [86082] picpiclink
        3. region c:213-505 [86084] picpiclink
        4. region d:213-505 [86086] picpiclink
        5. region e:213-505 [86088] picpiclink
        6. region f:213-505 [86090] picpiclink
    8. Pyrobaculum islandicum [TaxId: 2277] [117436] (1)
      SQ Q9Y8I4
      1. 1v9l picpicxref
        complexed with nad
        1. region a:180-421 [113583] picpiclink
        2. region b:180-421 [113585] picpiclink
        3. region c:180-421 [113587] picpiclink
        4. region d:180-421 [113589] picpiclink
        5. region e:180-421 [113591] picpiclink
        6. region f:180-421 [113593] picpiclink
  2. Leucine dehydrogenase [51890]
    1. Bacillus sphaericus [TaxId: 1421] [51891] (1)
      1. 1leh picpicxref
        1. region a:135-364 [30268] picpiclink
        2. region b:135-364 [30269] picpiclink
  3. Phenylalanine dehydrogenase [51892]
    1. Rhodococcus sp., M4 [TaxId: 1831] [51893] (4)
      1. 1c1d picpicxref
        complexed with ioh, k, na, nad, phe, po4
        1. region a:149-349 [30270] picpiclink
        2. region b:149-348 [30271] picpiclink
      2. 1c1x picpicxref
        complexed with ioh, k, lla, na, nad, po4
        1. region a:149-348 [30272] picpiclink
        2. region b:149-347 [30273] picpiclink
      3. 1bw9 picpicxref
        complexed with 1py, edo, ipa, k, na, nad, po4
        1. region a:149-350 [30274] picpiclink
        2. region b:549-747 [30275] picpiclink
      4. 1bxg picpicxref
        complexed with hci, k, nad, po4
        1. region a:149-349 [30276] picpiclink
        2. region b:549-747 [30277] picpiclink
  4. Methylenetetrahydrofolate dehydrogenase/cyclohydrolase [51894]
    the two-domain organization is similar to that of aminoacid dehydrogenases, but both domains are truncated
    1. Human (Homo sapiens) [TaxId: 9606] [51895] (4)
      1. 1a4i picpicxref
        complexed with ndp
        1. region a:127-296 [30278] picpiclink
        2. region b:127-296 [30279] picpiclink
      2. 1dig picpicxref
        complexed with act, l37, nap
        1. region a:127-296 [30282] picpiclink
        2. region b:1127-1296 [30283] picpiclink
      3. 1dia picpicxref
        complexed with l24, nap
        1. region a:127-296 [30280] picpiclink
        2. region b:1127-1296 [30281] picpiclink
      4. 1dib picpicxref
        complexed with l34, nap
        1. region a:127-296 [30284] picpiclink
        2. region b:1127-1296 [30285] picpiclink
    2. Escherichia coli [TaxId: 562] [51896] (1)
      1. 1b0a picpicxref
        1. region a:123-288 [30286] picpiclink
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51897] (2)
      1. 1edz picpicxref
        1. region a:149-319 [30287] picpiclink
      2. 1ee9 picpicxref
        complexed with nad
        1. region a:149-319 [30288] picpiclink
  5. Methylene-tetrahydromethanopterin dehydrogenase [82303]
    1. Methylobacterium extorquens [TaxId: 408] [82304] (2)
      1. 1lua picpicxref
        complexed with nap
        1. region a:98-288 [78216] picpiclink
        2. region b:98-288 [78218] picpiclink
        3. region c:98-288 [78220] picpiclink
      2. 1lu9 picpicxref
        1. region a:98-288 [78210] picpiclink
        2. region b:98-288 [78212] picpiclink
        3. region c:98-288 [78214] picpiclink
  6. Putative shikimate dehydrogenase YdiB [82305]
    1. Escherichia coli [TaxId: 562] [82306] (3)
      1. 1vi2 picpicxref
        structural genomics
        complexed with nad, so4
        1. region a:107-288 [100726] picpiclink
        2. region b:107-287 [100728] picpiclink
      2. 1npd picpicxref
        structural genomics
        complexed with mse, nad
        1. region a:107-287 [80681] picpiclink
        2. region b:107-288 [80683] picpiclink
      3. 1o9b picpicxref
        complexed with mse, nad, po4
        1. region a:107-287 [81237] picpiclink
        2. region b:107-287 [81239] picpiclink
  7. Shikimate 5-dehydrogenase-like protein HI0607 [89536]
    1. Haemophilus influenzae [TaxId: 727] [89537] (1)
      1. 1npy picpicxref
        structural genomics
        complexed with ace
        1. region a:103-269 [85995] picpiclink
        2. region b:103-270 [85997] picpiclink
        3. region c:103-270 [85999] picpiclink
        4. region d:103-270 [86001] picpiclink
  8. Shikimate 5-dehydrogenase AroE [89538]
    1. Escherichia coli [TaxId: 562] [89539] (1)
      1. 1nyt picpicxref
        complexed with dtt, nap, so4
        1. region a:102-271 [86417] picpiclink
        2. region b:102-271 [86419] picpiclink
        3. region c:102-269 [86421] picpiclink
        4. region d:102-270 [86423] picpiclink
    2. Haemophilus influenzae [TaxId: 727] [102173] (2)
      1. 1p77 picpicxref
        complexed with act, atr
        1. region a:102-272 [94214] picpiclink
      2. 1p74 picpicxref
        1. region a:102-272 [94206] picpiclink
        2. region b:102-272 [94208] picpiclink
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [89540] (1)
      MJ1084
      1. 1nvt picpicxref
        structural genomics
        complexed with nap, zn
        1. region a:111-287 [86270] picpiclink
        2. region b:111-287 [86272] picpiclink
  9. Glutamyl tRNA-reductase middle domain [69413]
    other domains of this protein are distinct from those usually associated with the family domain
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [69414] (1)
      1. 1gpj picpicxrefxref
        complexed with cit, glu, gmc; mutant
        1. region a:144-302 [65452] picpiclink
  10. Mitochondrial NAD(P)-dependent malic enzyme [51898]
    includes C-terminal additional subdomains
    1. Human (Homo sapiens) [TaxId: 9606] [51899] (10)
      1. 1pj3 picpicxref
        complexed with fum, mn, nad, pyr
        1. region a:280-573 [94726] picpiclink
        2. region b:1280-1573 [94728] picpiclink
        3. region c:2280-2573 [94730] picpiclink
        4. region d:3280-3573 [94732] picpiclink
      2. 1gz3 picpicxref
        complexed with atp, fum, mn, oxl; mutant
        1. region a:280-573 [83393] picpiclink
        2. region b:280-573 [83395] picpiclink
        3. region c:280-573 [83397] picpiclink
        4. region d:280-573 [83399] picpiclink
      3. 1gz4 picpicxref
        complexed with atp, fum, mn, mse, ttn
        1. region a:280-573 [70794] picpiclink
        2. region b:280-573 [70796] picpiclink
        3. region c:280-573 [70798] picpiclink
        4. region d:280-573 [70800] picpiclink
      4. 1pj2 picpicxref
        complexed with fum, mlt, mn, nai
        1. region a:280-573 [94718] picpiclink
        2. region b:1280-1573 [94720] picpiclink
        3. region c:2280-2573 [94722] picpiclink
        4. region d:3280-3573 [94724] picpiclink
      5. 1pj4 picpicxref
        complexed with atp, fum, mlt, mn
        1. region a:280-573 [94734] picpiclink
        2. region b:1280-1573 [94736] picpiclink
        3. region c:2280-2573 [94738] picpiclink
        4. region d:3280-3573 [94740] picpiclink
      6. 1do8 picpicxref
        complexed with mn, nad, oxl; mutant
        1. region a:280-573 [30289] picpiclink
        2. region b:280-573 [30290] picpiclink
        3. region c:280-573 [30291] picpiclink
        4. region d:280-573 [30292] picpiclink
      7. 1qr6 picpicxref
        complexed with nad; mutant
        1. region a:280-573 [30293] picpiclink
        2. region b:1280-1573 [30294] picpiclink
      8. 1efl picpicxref
        complexed with mg, nad, ttn
        1. region a:280-573 [30295] picpiclink
        2. region b:280-573 [30296] picpiclink
        3. region c:280-573 [30297] picpiclink
        4. region d:280-573 [30298] picpiclink
      9. 1efk picpicxref
        complexed with mak, mo1, nad
        1. region a:280-573 [30299] picpiclink
        2. region b:280-573 [30300] picpiclink
        3. region c:280-573 [30301] picpiclink
        4. region d:280-573 [30302] picpiclink
      10. 1pjl picpicxref
        complexed with lu, mse, nad
        1. region a:280-573 [88123] picpiclink
        2. region b:1280-1573 [88125] picpiclink
        3. region c:2280-2573 [88127] picpiclink
        4. region d:3280-3573 [88129] picpiclink
        5. region e:4280-4573 [88131] picpiclink
        6. region f:5280-5573 [88133] picpiclink
        7. region g:6280-6573 [88135] picpiclink
        8. region h:7280-7573 [88137] picpiclink
    2. Domestic pigeon (Columba livia) [TaxId: 8932] [75116] (1)
      1. 1gq2 picpicxref
        complexed with cl, mn, mse, na, nap, oxl
        1. region a:280-580 [70308] picpiclink
        2. region b:280-580 [70310] picpiclink
        3. region c:280-580 [70312] picpiclink
        4. region d:280-580 [70314] picpiclink
        5. region e:280-580 [70316] picpiclink
        6. region f:280-580 [70318] picpiclink
        7. region g:280-580 [70320] picpiclink
        8. region h:280-580 [70322] picpiclink
        9. region i:280-580 [70324] picpiclink
        10. region j:280-580 [70326] picpiclink
        11. region k:280-580 [70328] picpiclink
        12. region l:280-580 [70330] picpiclink
        13. region m:280-580 [70332] picpiclink
        14. region n:280-580 [70334] picpiclink
        15. region o:280-580 [70336] picpiclink
        16. region p:280-580 [70338] picpiclink
    3. Pig roundworm (Ascaris suum) [TaxId: 6253] [75117] (2)
      1. 1o0s picpicxref
        complexed with nai, ttn
        1. region a:296-603 [86540] picpiclink
        2. region b:296-593 [86542] picpiclink
      2. 1llq picpicxref
        complexed with nad
        1. region a:296-600 [74008] picpiclink
        2. region b:296-593 [74010] picpiclink
  11. Malate oxidoreductase (malic enzyme) [110434]
    1. Thermotoga maritima [TaxId: 2336] [110435] (5)
      SQ Q9WZ12
      1. 1vl6 picpicxref
        Structural genomics target
        1. region a:155-376 [108724] picpiclink
        2. region b:155-376 [108726] picpiclink
        3. region c:155-376 [108728] picpiclink
        4. region d:155-376 [108730] picpiclink
      2. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a1
        complexed with nad, zn
        1. region a:155-376 [136278] picpiclink
      3. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a1
        complexed with nad, zn
        1. region b:155-376 [136280] picpiclink
      4. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a1
        complexed with nad, zn
        1. region c:155-376 [136282] picpiclink
      5. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a1
        complexed with nad, zn
        1. region d:155-376 [136284] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk