Structural Classification of Proteins
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Family: Aminoacid dehydrogenase-like, C-terminal domain

extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: Aminoacid dehydrogenase-like, C-terminal domain [51883]
    extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein Domains:

  1. Glutamate dehydrogenase [51884]
    1. Clostridium symbiosum [TaxId: 1512] [51885] (4) picpic
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [51886] (1) picpic
    3. Archaeon Thermococcus profundus [TaxId: 49899] [63943] (1) picpic
    4. Archaeon Thermococcus litoralis [TaxId: 2265] [51887] (1) picpic
    5. Thermotoga maritima [TaxId: 2336] [51888] (3) picpic
    6. Cow (Bos taurus) [TaxId: 9913] [51889] (5) picpic
    7. Human (Homo sapiens) [TaxId: 9606] [75115] (2) picpic
    8. Pyrobaculum islandicum [TaxId: 2277] [117436] (1) picpic
      SQ Q9Y8I4
  2. Leucine dehydrogenase [51890]
    1. Bacillus sphaericus [TaxId: 1421] [51891] (1) picpic
  3. Phenylalanine dehydrogenase [51892]
    1. Rhodococcus sp., M4 [TaxId: 1831] [51893] (4) picpic
  4. Methylenetetrahydrofolate dehydrogenase/cyclohydrolase [51894]
    the two-domain organization is similar to that of aminoacid dehydrogenases, but both domains are truncated
    1. Human (Homo sapiens) [TaxId: 9606] [51895] (4) picpic
    2. Escherichia coli [TaxId: 562] [51896] (1) picpic
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51897] (2) picpic
  5. Methylene-tetrahydromethanopterin dehydrogenase [82303]
    1. Methylobacterium extorquens [TaxId: 408] [82304] (2) picpic
  6. Putative shikimate dehydrogenase YdiB [82305]
    1. Escherichia coli [TaxId: 562] [82306] (3) picpic
  7. Shikimate 5-dehydrogenase-like protein HI0607 [89536]
    1. Haemophilus influenzae [TaxId: 727] [89537] (1) picpic
  8. Shikimate 5-dehydrogenase AroE [89538]
    1. Escherichia coli [TaxId: 562] [89539] (1) picpic
    2. Haemophilus influenzae [TaxId: 727] [102173] (2) picpic
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [89540] (1) picpic
      MJ1084
  9. Glutamyl tRNA-reductase middle domain [69413]
    other domains of this protein are distinct from those usually associated with the family domain
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [69414] (1) picpic
  10. Mitochondrial NAD(P)-dependent malic enzyme [51898]
    includes C-terminal additional subdomains
    1. Human (Homo sapiens) [TaxId: 9606] [51899] (10) picpic
    2. Domestic pigeon (Columba livia) [TaxId: 8932] [75116] (1) picpic
    3. Pig roundworm (Ascaris suum) [TaxId: 6253] [75117] (2) picpic
  11. Malate oxidoreductase (malic enzyme) [110434]
    1. Thermotoga maritima [TaxId: 2336] [110435] (5) picpic
      SQ Q9WZ12
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk