Structural Classification of Proteins

Fold: Ribonuclease H-like motif

: 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: Ribonuclease H-like motif [53066]
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

Superfamilies:

Actin-like ATPase domain [53067] (14)
duplication contains two domains of this fold
uperfamily
1. Actin/HSP70 [53068] (14)
  1. Heat shock protein 70kDa, ATPase fragment [53069]
    1. Cow (Bos taurus) [TaxId: 9913] [53070] (51)
      1. 1bup
        complexed with adp, clo, kio, mg, pi; mutant
        
        region a:4-188 [33377]
        region a:189-381 [33378]
      2. 2bup
        complexed with adp, atp, clo, kio, mg, pi; mutant
        
        region a:4-188 [33379]
        region a:189-381 [33380]
      3. 1kay
        complexed with atp, cl, k, mg; mutant
        
        region a:4-188 [33385]
        region a:189-381 [33386]
      4. 1kaz
        complexed with atp, cl, k, mg; mutant
        
        region a:4-188 [33383]
        region a:189-381 [33384]
      5. 1ba1
        complexed with adp, cl, mg, na; mutant
        
        region a:4-188 [33387]
        region a:189-381 [33388]
      6. 1hpm
        complexed with adp, cl, k p, mg, po4
        
        region a:4-188 [33381]
        region a:189-381 [33382]
      7. 1kax
        complexed with atp, cl, k, mg; mutant
        
        region a:4-188 [33389]
        region a:189-381 [33390]
      8. 2qwl
        automatically matched to d1atra1
        complexed with adp, gol, mg, na
        
        region a:4-188 [151419]
      9. 2qwl
        automatically matched to d1atra2
        complexed with adp, gol, mg, na
        
        region a:189-384 [151420]
      10. 2qwl
        automatically matched to d1atra1
        complexed with adp, gol, mg, na
        
        region b:4-188 [151421]
      11. 2qwl
        automatically matched to d1atra2
        complexed with adp, gol, mg, na
        
        region b:189-384 [151422]
      12. 2qwo
        automatically matched to d1atra1
        complexed with acy, adp, gol, mg, na, po4; mutant
        
        region a:4-188 [151430]
      13. 2qwo
        automatically matched to d1atra2
        complexed with acy, adp, gol, mg, na, po4; mutant
        
        region a:189-384 [151431]
      14. 2qwp
        automatically matched to d1atra1
        complexed with acy, adp, gol, mg, na, po4; mutant
        
        region a:4-188 [151432]
      15. 2qwp
        automatically matched to d1atra2
        complexed with acy, adp, gol, mg, na, po4; mutant
        
        region a:189-384 [151433]
      16. 1qqn
        complexed with adp, cl, k, mg, pi; mutant
        
        region a:4-188 [33393]
        region a:189-381 [33394]
      17. 1qqm
        complexed with adp, cl, k, mg, pi; mutant
        
        region a:4-188 [33391]
        region a:189-381 [33392]
      18. 2qwm
        automatically matched to d1atra1
        complexed with adp, gol, mg, na, vo4
        
        region a:4-188 [151423]
      19. 2qwm
        automatically matched to d1atra2
        complexed with adp, gol, mg, na, vo4
        
        region a:189-384 [151424]
      20. 2qwm
        automatically matched to d1atra1
        complexed with adp, gol, mg, na, vo4
        
        region b:4-188 [151425]
      21. 2qwm
        automatically matched to d1atra2
        complexed with adp, gol, mg, na, vo4
        
        region b:189-384 [151426]
      22. 1qqo
        complexed with adp, cl, k, mg; mutant
        
        region a:4-188 [33395]
        region a:189-381 [33396]
      23. 2qw9
        automatically matched to d1atra1
        complexed with gol
        
        region a:3-188 [151415]
      24. 2qw9
        automatically matched to d1atra2
        complexed with gol
        
        region a:189-384 [151416]
      25. 2qw9
        automatically matched to d1atra1
        complexed with gol
        
        region b:3-188 [151417]
      26. 2qw9
        automatically matched to d1atra2
        complexed with gol
        
        region b:189-384 [151418]
      27. 1ba0
        complexed with adp, cl, mg, na, po4; mutant
        
        region a:4-188 [33397]
        region a:189-381 [33398]
      28. 1hx1
        complexed with trs
        
        region a:5-188 [61348]
        region a:189-381 [61349]
      29. 1nge
        complexed with atp; mutant
        
        region a:4-188 [33409]
        region a:189-381 [33410]
      30. 3hsc
        complexed with adp, mg, na, po4
        
        region a:3-188 [33399]
        region a:189-384 [33400]
      31. 1ngb
        complexed with adp, mg, po4; mutant
        
        region a:4-188 [33401]
        region a:189-381 [33402]
      32. 1ngj
        complexed with anp, mg
        
        region a:3-188 [33403]
        region a:189-384 [33404]
      33. 1ngf
        complexed with atp; mutant
        
        region a:3-188 [33405]
        region a:189-384 [33406]
      34. 1ngg
        complexed with atp, mg; mutant
        
        region a:3-188 [33415]
        region a:189-381 [33416]
      35. 1nga
        complexed with adp, mg; mutant
        
        region a:4-188 [33407]
        region a:189-381 [33408]
      36. 1ngc
        complexed with adp, mg, po4; mutant
        
        region a:4-188 [33411]
        region a:189-381 [33412]
      37. 1ngh
        complexed with atp; mutant
        
        region a:4-188 [33413]
        region a:189-381 [33414]
      38. 1ngd
        complexed with adp, mg, po4; mutant
        
        region a:4-188 [33417]
        region a:189-381 [33418]
      39. 1ngi
        complexed with anp, ca
        
        region a:4-188 [33419]
        region a:189-381 [33420]
      40. 2qwq
        automatically matched to d1atra1
        complexed with acy, adp, gol, po4; mutant
        
        region a:4-188 [151434]
      41. 2qwq
        automatically matched to d1atra2
        complexed with acy, adp, gol, po4; mutant
        
        region a:189-384 [151435]
      42. 2qwr
        automatically matched to d1atra1
        complexed with acy, anp, gol; mutant
        
        region a:4-188 [151436]
      43. 2qwr
        automatically matched to d1atra2
        complexed with acy, anp, gol; mutant
        
        region a:189-384 [151437]
      44. 1atr
        complexed with adp, mg, po4; mutant
        
        region a:2-188 [33421]
        region a:189-384 [33422]
      45. 1ats
        complexed with adp, mg; mutant
        
        region a:2-188 [33423]
        region a:189-383 [33424]
      46. 2qwn
        automatically matched to d1atra1
        complexed with adp, mg, na, po4; mutant
        
        region a:3-188 [151427]
      47. 2qwn
        automatically matched to d1atra2
        complexed with adp, mg, na, po4; mutant
        
        region a:189-384 [151428]
      48. 1yuw
        automatically matched to d1atr_1
        mutant
        
        region a:2-188 [124071]
      49. 1yuw
        automatically matched to d1atr_2
        mutant
        
        region a:189-384 [124072]
      50. 3c7n
        automatically matched to d1atra1
        complexed with adp, bef, cl, mg, so4
        
        region b:3-188 [156015]
      51. 3c7n
        automatically matched to d1ngja2
        complexed with adp, bef, cl, mg, so4
        
        region b:189-384 [156016]
    2. Human (Homo sapiens) [TaxId: 9606] [53071] (14)
      1. 2e8a
        automatically matched to d1hjoa1
        complexed with anp, mg
        
        region a:3-188 [146724]
      2. 2e8a
        automatically matched to d1hjoa2
        complexed with anp, mg
        
        region a:189-382 [146725]
      3. 1s3x
        complexed with adp, ca, na, po4
        
        region a:3-188 [98467]
        region a:189-382 [98468]
      4. 2e88
        automatically matched to d1hjoa1
        complexed with zn
        
        region a:3-188 [146714]
      5. 2e88
        automatically matched to d1hjoa2
        complexed with zn
        
        region a:189-382 [146715]
      6. 1hjo
        complexed with adp, ca, cl
        
        region a:3-188 [33425]
        region a:189-382 [33426]
      7. 3d2f
        automatically matched to d1hjoa1
        complexed with atp, gol, k, mg
        
        region b:4-188 [157249]
      8. 3d2f
        automatically matched to d1hjoa2
        complexed with atp, gol, k, mg
        
        region b:189-382 [157250]
      9. 3d2f
        automatically matched to d1hjoa1
        complexed with atp, gol, k, mg
        
        region d:4-188 [157251]
      10. 3d2f
        automatically matched to d1hjoa2
        complexed with atp, gol, k, mg
        
        region d:189-382 [157252]
      11. 3d2e
        automatically matched to d1hjoa1
        complexed with atp, gol, mg
        
        region b:4-188 [157245]
      12. 3d2e
        automatically matched to d1hjoa2
        complexed with atp, gol, mg
        
        region b:189-382 [157246]
      13. 3d2e
        automatically matched to d1hjoa1
        complexed with atp, gol, mg
        
        region d:4-188 [157247]
      14. 3d2e
        automatically matched to d1hjoa2
        complexed with atp, gol, mg
        
        region d:189-382 [157248]
    3. Escherichia coli, gene dnaK [TaxId: 562] [53072] (1)
      1. 1dkg
        mutant
        
        region d:3-185 [33427]
        region d:186-383 [33428]
  2. Actin [53073]
    1. Cow (Bos taurus) [TaxId: 9913] [53074] (68)
      1. 2fxu
        automatically matched to d1hlua1
        complexed with atp, bid, ca
        
        region a:7-146 [134340]
      2. 2fxu
        automatically matched to d1hlua2
        complexed with atp, bid, ca
        
        region a:147-371 [134341]
      3. 1wua
        automatically matched to d1hlua1
        complexed with ap8, atp, ca
        
        region a:7-146 [121281]
      4. 1wua
        automatically matched to d1hlua2
        complexed with ap8, atp, ca
        
        region a:147-371 [121282]
      5. 2asm
        automatically matched to d1hlua1
        complexed with atp, ca, edo, rga
        
        region a:7-146 [127262]
      6. 2asm
        automatically matched to d1hlua2
        complexed with atp, ca, edo, rga
        
        region a:147-371 [127263]
      7. 2asp
        automatically matched to d1hlua1
        complexed with atp, ca, edo, rgc
        
        region a:7-146 [127267]
      8. 2asp
        automatically matched to d1hlua2
        complexed with atp, ca, edo, rgc
        
        region a:147-371 [127268]
      9. 2aso
        automatically matched to d1hlua1
        complexed with atp, ca, spx
        
        region a:7-146 [127265]
      10. 2aso
        automatically matched to d1hlua2
        complexed with atp, ca, spx
        
        region a:147-371 [127266]
      11. 2hf3
        automatically matched to d1hlua1
        complexed with adp, ca; mutant
        
        region a:2-146 [136373]
      12. 2hf3
        automatically matched to d1hlua2
        complexed with adp, ca; mutant
        
        region a:147-375 [136374]
      13. 2hf4
        automatically matched to d1hlua1
        complexed with atp, ca; mutant
        
        region a:2-146 [136375]
      14. 2hf4
        automatically matched to d1hlua2
        complexed with atp, ca; mutant
        
        region a:147-375 [136376]
      15. 2gwj
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region a:5-146 [135807]
      16. 2gwj
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region a:147-374 [135808]
      17. 2a40
        automatically matched to d1hlua1
        complexed with atp, ca, gol, mg, nag
        
        region a:7-146 [126137]
      18. 2a40
        automatically matched to d1hlua2
        complexed with atp, ca, gol, mg, nag
        
        region a:147-366 [126138]
      19. 2a40
        automatically matched to d1hlua1
        complexed with atp, ca, gol, mg, nag
        
        region d:7-146 [126140]
      20. 2a40
        automatically matched to d1hlua2
        complexed with atp, ca, gol, mg, nag
        
        region d:147-366 [126141]
      21. 2a42
        automatically matched to d1hlua1
        complexed with atp, ca, gol, mg, nag
        
        region a:7-146 [126146]
      22. 2a42
        automatically matched to d1hlua2
        complexed with atp, ca, gol, mg, nag
        
        region a:147-365 [126147]
      23. 2hmp
        automatically matched to d1hlua1
        complexed with 211, atp, edo, spd, sr
        
        region a:5-146 [136603]
      24. 2hmp
        automatically matched to d1hlua2
        complexed with 211, atp, edo, spd, sr
        
        region a:147-374 [136604]
      25. 2hmp
        automatically matched to d1hlua1
        complexed with 211, atp, edo, spd, sr
        
        region b:5-146 [136605]
      26. 2hmp
        automatically matched to d1hlua2
        complexed with 211, atp, edo, spd, sr
        
        region b:147-374 [136606]
      27. 2gwk
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region a:5-146 [135809]
      28. 2gwk
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region a:147-374 [135810]
      29. 2gwk
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region b:5-146 [135811]
      30. 2gwk
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region b:147-374 [135812]
      31. 2a3z
        automatically matched to d1hlua1
        complexed with atp, ca, fmt, gol, mg, nag
        
        region a:7-146 [126134]
      32. 2a3z
        automatically matched to d1hlua2
        complexed with atp, ca, fmt, gol, mg, nag
        
        region a:147-365 [126135]
      33. 2ff3
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region b:7-146 [133365]
      34. 2ff3
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region b:147-371 [133366]
      35. 1yxq
        automatically matched to d1hlua1
        complexed with atp, edo, mg, swi
        
        region a:7-146 [124196]
      36. 1yxq
        automatically matched to d1hlua2
        complexed with atp, edo, mg, swi
        
        region a:147-371 [124197]
      37. 1yxq
        automatically matched to d1hlua1
        complexed with atp, edo, mg, swi
        
        region b:7-146 [124198]
      38. 1yxq
        automatically matched to d1hlua2
        complexed with atp, edo, mg, swi
        
        region b:147-371 [124199]
      39. 2ff6
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region a:7-146 [133374]
      40. 2ff6
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region a:147-371 [133375]
      41. 2q36
        automatically matched to d1hlua1
        complexed with atp, ca, kab, so4
        
        region a:7-146 [139792]
      42. 2q36
        automatically matched to d1hlua2
        complexed with atp, ca, kab, so4
        
        region a:147-371 [139793]
      43. 2a5x
        automatically matched to d1hlua1
        complexed with anp, ca, lar, mpd, nsb
        
        region a:7-146 [126181]
      44. 2a5x
        automatically matched to d1hlua2
        complexed with anp, ca, lar, mpd, nsb
        
        region a:147-371 [126182]
      45. 2a41
        automatically matched to d1hlua1
        complexed with atp, bma, ca, fmt, mg, nag
        
        region a:7-146 [126143]
      46. 2a41
        automatically matched to d1hlua2
        complexed with atp, bma, ca, fmt, mg, nag
        
        region a:147-371 [126144]
      47. 2oan
        automatically matched to d1hlua1
        complexed with atp, ca, oc4, so4
        
        region a:6-146 [148706]
      48. 2oan
        automatically matched to d1hlua2
        complexed with atp, ca, oc4, so4
        
        region a:147-371 [148707]
      49. 2oan
        automatically matched to d1hlua1
        complexed with atp, ca, oc4, so4
        
        region b:6-146 [148708]
      50. 2oan
        automatically matched to d1hlua2
        complexed with atp, ca, oc4, so4
        
        region b:147-371 [148709]
      51. 2oan
        automatically matched to d1hlua1
        complexed with atp, ca, oc4, so4
        
        region c:6-146 [148710]
      52. 2oan
        automatically matched to d1hlua2
        complexed with atp, ca, oc4, so4
        
        region c:147-371 [148711]
      53. 2oan
        automatically matched to d1hlua1
        complexed with atp, ca, oc4, so4
        
        region d:6-146 [148712]
      54. 2oan
        automatically matched to d1hlua2
        complexed with atp, ca, oc4, so4
        
        region d:147-371 [148713]
      55. 2q1n
        automatically matched to d1hlua1
        complexed with anp, ca, lar
        
        region a:7-146 [139783]
      56. 2q1n
        automatically matched to d1hlua2
        complexed with anp, ca, lar
        
        region a:147-371 [139784]
      57. 2q1n
        automatically matched to d1hlua1
        complexed with anp, ca, lar
        
        region b:7-146 [139785]
      58. 2q1n
        automatically matched to d1hlua2
        complexed with anp, ca, lar
        
        region b:147-371 [139786]
      59. 2q31
        automatically matched to d1hlua1
        complexed with atp, ca, lar
        
        region a:7-146 [139788]
      60. 2q31
        automatically matched to d1hlua2
        complexed with atp, ca, lar
        
        region a:147-366 [139789]
      61. 2q31
        automatically matched to d1hlua1
        complexed with atp, ca, lar
        
        region b:7-146 [139790]
      62. 2q31
        automatically matched to d1hlua2
        complexed with atp, ca, lar
        
        region b:147-367 [139791]
      63. 2d1k
        automatically matched to d1hlua1
        complexed with atp, bma, ca, mg, nag
        
        region a:4-146 [131129]
      64. 2d1k
        automatically matched to d1hlua2
        complexed with atp, bma, ca, mg, nag
        
        region a:147-374 [131130]
      65. 2btf
        complexed with atp, ch3, sr
        
        region a:2-146 [33429]
        region a:147-375 [33430]
      66. 1hlu
        complexed with ace, atp, ca
        
        region a:2-146 [33431]
        region a:147-375 [33432]
      67. 1y64
        automatically matched to d1hlua1
        complexed with atp, ca
        
        region a:7-146 [122657]
      68. 1y64
        automatically matched to d1hlua2
        complexed with atp, ca
        
        region a:147-371 [122658]
    2. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [53075] (20)
      SQ P02568 ! SQ 02568
      1. 1qz5
        complexed with atp, ca, kab
        
        region a:5-146 [96614]
        region a:147-375 [96615]
      2. 1s22
        complexed with atp, ca, egl, ula
        
        region a:5-146 [98364]
        region a:147-371 [98365]
      3. 1j6z
        complexed with adp, ca, rho
        
        region a:4-146 [62667]
        region a:147-372 [62668]
      4. 1qz6
        complexed with atp, ca, jas, suc
        
        region a:5-146 [96616]
        region a:147-375 [96617]
      5. 1t44
        complexed with atp, ca
        
        region a:6-146 [106393]
        region a:147-375 [106394]
      6. 1nwk
        complexed with anp, ca, rho
        
        region a:6-146 [92241]
        region a:147-371 [92242]
      7. 1kxp
        complexed with atp, mg
        
        region a:4-146 [73158]
        region a:147-364 [73159]
      8. 1rdw
        complexed with atp, lar, mg
        
        region x:5-146 [97315]
        region x:147-375 [97316]
      9. 1ma9
        complexed with atp, mg, nem
        
        region b:5-146 [78890]
        region b:147-371 [78891]
      10. 1esv
        complexed with atp, ca, lar; mutant
        
        region a:6-146 [33433]
        region a:147-375 [33434]
      11. 1eqy
        complexed with atp, ca; mutant
        
        region a:6-146 [33435]
        region a:147-375 [33436]
      12. 1sqk
        complexed with adp, lar, mg
        
        region a:5-146 [105922]
        region a:147-371 [105923]
      13. 1lot
        complexed with atp, ca, gol, hic
        
        region b:3-146 [74164]
        region b:147-373 [74165]
      14. 1p8z
        complexed with atp, ca, cd
        
        region a:6-146 [94374]
        region a:147-370 [94375]
      15. 1atn
        complexed with atp, ca, man, me, nag
        
        region a:1-146 [33437]
        region a:147-372 [33438]
      16. 1h1v
        complexed with atp, ca
        
        region a:5-146 [76501]
        region a:147-375 [76502]
      17. 1rgi
        complexed with atp, ca
        
        region a:5-146 [104926]
        region a:147-365 [104927]
      18. 1ijj
        complexed with atp, lar, mg
        
        region a:5-146 [71230]
        region a:147-374 [71231]
        region b:404-546 [71232]
        region b:547-774 [71233]
      19. 1lcu
        complexed with atp, ca, cl, lar
        
        region a:15-157 [73830]
        region a:158-385 [73831]
        region b:1015-1157 [73832]
        region b:1158-1385 [73833]
      20. 1rfq
        complexed with atp, lar, mg
        
        region a:5-146 [97396]
        region a:147-375 [97397]
        region b:5-146 [97398]
        region b:147-375 [97399]
    3. Chicken (Gallus gallus) [TaxId: 9031] [82437] (1)
      sequence identical to the rabbit actin
      1. 1mdu
        complexed with atp, ca, hic, trs
        
        region e:7-146 [79018]
        region e:147-374 [79019]
        region b:7-146 [79015]
        region b:147-375 [79016]
    4. Nematode (Caenorhabditis elegans) [TaxId: 6239] [64086] (1)
      1. 1d4x
        complexed with atp, ca, mg, so2, so4
        
        region a:4-146 [59107]
        region a:147-375 [59108]
    5. Dictyostelium discoideum [TaxId: 44689] [53076] (6)
      1. 1nm1
        complexed with atp, ca, mg, so2, so4
        
        region a:4-146 [80651]
        region a:147-375 [80652]
      2. 1nlv
        complexed with atp, ca, so2, so4
        
        region a:4-146 [80630]
        region a:147-375 [80631]
      3. 1nmd
        complexed with atp, ca, so2, so4
        
        region a:4-146 [80656]
        region a:147-375 [80657]
      4. 1c0f
        complexed with atp, ca; mutant
        
        region a:1-146 [33447]
        region a:147-375 [33448]
      5. 1c0g
        dictyostelium/tetrahymena chimera
        complexed with atp, ca; mutant
        
        region a:1-146 [33443]
        region a:147-375 [33444]
      6. 1dej
        dictyostelium/tetrahymena chimera
        complexed with atp, ca; mutant
        
        region a:1-146 [33445]
        region a:147-375 [33446]
    6. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [53077] (2)
      1. 1yag
        complexed with atp, ca, mg, so4
        
        region a:4-146 [33449]
        region a:147-375 [33450]
      2. 1yvn
        complexed with atp, ca, mg, so4; mutant
        
        region a:4-146 [33451]
        region a:147-375 [33452]
  3. Prokaryotic actin homolog MreB [64087]
    1. Thermotoga maritima [TaxId: 2336] [64088] (3)
      1. 1jcf
        
        region a:1-140 [62878]
        region a:141-336 [62879]
      2. 1jce
        
        region a:4-140 [62876]
        region a:141-336 [62877]
      3. 1jcg
        complexed with anp, mg
        
        region a:1-140 [62880]
        region a:141-335 [62881]
  4. Actin-related protein 3, Arp3 [69528]
    part of Arp2/3 complex
    1. Cow (Bos taurus) [TaxId: 9913] [69529] (17)
      SQ P61158
      1. 1k8k
        
        region a:3-160 [68305]
        region a:161-418 [68306]
      2. 2p9i
        automatically matched to d1tyqa1
        complexed with adp, ca
        
        region a:3-160 [139582]
      3. 2p9i
        automatically matched to d1k8ka2
        complexed with adp, ca
        
        region a:161-412 [139583]
      4. 1u2v
        complexed with adp, ca
        
        region a:2-160 [112988]
        region a:161-418 [112989]
      5. 2p9k
        automatically matched to d1tyqa1
        complexed with atp, ca
        
        region a:3-160 [139590]
      6. 2p9k
        automatically matched to d1k8ka2
        complexed with atp, ca
        
        region a:161-412 [139591]
      7. 1tyq
        complexed with atp, ca
        
        region a:2-160 [112841]
        region a:161-418 [112842]
      8. 2p9l
        automatically matched to d1tyqa1
        
        region a:3-160 [139598]
      9. 2p9l
        automatically matched to d1k8ka2
        
        region a:161-412 [139599]
      10. 2p9s
        automatically matched to d1tyqa1
        complexed with atp, mg
        
        region a:3-160 [139622]
      11. 2p9s
        automatically matched to d1k8ka2
        complexed with atp, mg
        
        region a:161-412 [139623]
      12. 2p9u
        automatically matched to d1tyqa1
        complexed with anp, ca
        
        region a:3-160 [139630]
      13. 2p9u
        automatically matched to d1k8ka2
        complexed with anp, ca
        
        region a:161-412 [139631]
      14. 2p9n
        automatically matched to d1tyqa1
        complexed with adp, ca
        
        region a:3-160 [139606]
      15. 2p9n
        automatically matched to d1k8ka2
        complexed with adp, ca
        
        region a:161-412 [139607]
      16. 2p9p
        automatically matched to d1tyqa1
        complexed with adp, ca
        
        region a:3-155 [139614]
      17. 2p9p
        automatically matched to d1k8ka2
        complexed with adp, ca
        
        region a:161-412 [139615]
  5. Actin-related protein 2, Arp2 [69530]
    part of Arp2/3 complex
    1. Cow (Bos taurus) [TaxId: 9913] [69531] (3)
      SQ P61160 143-350 # 100% sequence identity
      1. 1k8k
        the second half only
        
        region b:154-343 [68307]
      2. 1u2v
        only the second half is ordered
        complexed with adp, ca
        
        region b:147-350 [112990]
      3. 1tyq
        only the second half is ordered
        complexed with atp, ca
        
        region b:147-350 [112843]
  6. Cell division protein FtsA [53078]
    1. Thermotoga maritima [TaxId: 2336] [53079] (2)
      1. 1e4f
        CASP4
        
        region t:7-199 [33453]
        region t:200-390 [33454]
      2. 1e4g
        complexed with atp, mg
        
        region t:6-199 [33455]
        region t:200-392 [33456]
  7. Plasmid segregation protein ParM [82438]
    1. Escherichia coli [TaxId: 562] [82439] (14)
      1. 2zgy
        automatically matched to d1mwka1
        complexed with gdp, mg
        
        region a:1-157 [154425]
      2. 2zgy
        automatically matched to d1mwka2
        complexed with gdp, mg
        
        region a:158-320 [154426]
      3. 2zgy
        automatically matched to d1mwka1
        complexed with gdp, mg
        
        region b:1-157 [154427]
      4. 2zgy
        automatically matched to d1mwka2
        complexed with gdp, mg
        
        region b:158-320 [154428]
      5. 2zgz
        automatically matched to d1mwka1
        complexed with gnp, mg
        
        region a:1-157 [154429]
      6. 2zgz
        automatically matched to d1mwka2
        complexed with gnp, mg
        
        region a:158-320 [154430]
      7. 2zgz
        automatically matched to d1mwka1
        complexed with gnp, mg
        
        region b:1-157 [154431]
      8. 2zgz
        automatically matched to d1mwka2
        complexed with gnp, mg
        
        region b:158-320 [154432]
      9. 1mwm
        complexed with adp, mg
        
        region a:1-157 [79580]
        region a:158-320 [79581]
        region b:1-157 [79582]
        region b:158-320 [79583]
      10. 1mwk
        
        region a:1-157 [79576]
        region a:158-320 [79577]
        region b:1-157 [79578]
        region b:158-319 [79579]
      11. 2qu4
        automatically matched to d1mwka1
        
        region a:1-157 [151365]
      12. 2qu4
        automatically matched to d1mwka2
        
        region a:158-320 [151366]
      13. 2zhc
        automatically matched to d1mwka1
        complexed with adp, mg
        
        region a:1-157 [154466]
      14. 2zhc
        automatically matched to d1mwka2
        complexed with adp, mg
        
        region a:158-320 [154467]
2. BadF/BadG/BcrA/BcrD-like [64089] (5)
  1. Hydroxyglutaryl-CoA dehydratase component A [64090]
    1. Acidaminococcus fermentans [TaxId: 905] [64091] (1)
      1. 1hux
        complexed with adp, fs4
        
        chain a [61278]
        chain b [61279]
  2. Hypothetical protein PG1100 [142452]
    1. Porphyromonas gingivalis [TaxId: 837] [142453] (2)
      SQ Q7MVG4 1-107! SQ Q7MVG4 108-283
      1. 1zbs
        
        region a:108-283 [124870]
      2. 1zbs
        
        region a:1-107 [124871]
  3. Probable N-acetylglucosamine kinase CV2896 [142454]
    1. Chromobacterium violaceum [TaxId: 536] [142455] (4)
      SQ Q7NU07 122-292! SQ Q7NU07 8-121
      1. 1zc6
        
        region a:8-121 [124888]
      2. 1zc6
        
        region a:122-292 [124889]
      3. 1zc6
        automatically matched to 1ZC6 A:8-121
        
        region b:8-121 [124890]
      4. 1zc6
        automatically matched to 1ZC6 A:122-292
        
        region b:122-292 [124891]
  4. Hypothetical protein BT3618 [142456]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [142457] (12)
      SQ Q8A1P1 107-280! SQ Q8A1P1 3-106
      1. 1zxo
        
        region a:3-106 [125784]
      2. 1zxo
        
        region a:107-280 [125785]
      3. 1zxo
        automatically matched to 1ZXO A:3-106
        
        region b:3-106 [125786]
      4. 1zxo
        automatically matched to 1ZXO A:107-280
        
        region b:107-280 [125787]
      5. 1zxo
        automatically matched to 1ZXO A:3-106
        
        region c:3-106 [125788]
      6. 1zxo
        automatically matched to 1ZXO A:107-280
        
        region c:107-280 [125789]
      7. 1zxo
        automatically matched to 1ZXO A:3-106
        
        region d:3-106 [125790]
      8. 1zxo
        automatically matched to 1ZXO A:107-280
        
        region d:107-280 [125791]
      9. 1zxo
        automatically matched to 1ZXO A:3-106
        
        region e:3-106 [125792]
      10. 1zxo
        automatically matched to 1ZXO A:107-280
        
        region e:107-280 [125793]
      11. 1zxo
        automatically matched to 1ZXO A:3-106
        
        region f:3-106 [125794]
      12. 1zxo
        automatically matched to 1ZXO A:107-280
        
        region f:107-277 [125795]
  5. N-acetylglucosamine kinase, NAGK [142458]
    1. Human (Homo sapiens) [TaxId: 9606] [142459] (16)
      SQ Q9UJ70 1-117! SQ Q9UJ70 118-344
      1. 2ch5
        complexed with gol, nag, ndg
        
        region a:118-344 [130453]
      2. 2ch5
        complexed with gol, nag, ndg
        
        region a:1-117 [130454]
      3. 2ch5
        automatically matched to 2CH5 A:118-344
        complexed with gol, nag, ndg
        
        region b:118-344 [130455]
      4. 2ch5
        automatically matched to 2CH5 A:1-117
        complexed with gol, nag, ndg
        
        region b:1-117 [130456]
      5. 2ch5
        automatically matched to 2CH5 A:118-344
        complexed with gol, nag, ndg
        
        region c:118-344 [130457]
      6. 2ch5
        automatically matched to 2CH5 A:1-117
        complexed with gol, nag, ndg
        
        region c:1-117 [130458]
      7. 2ch5
        automatically matched to 2CH5 A:118-344
        complexed with gol, nag, ndg
        
        region d:118-344 [130459]
      8. 2ch5
        automatically matched to 2CH5 A:1-117
        complexed with gol, nag, ndg
        
        region d:1-117 [130460]
      9. 2ch6
        automatically matched to 2CH5 A:118-344
        complexed with adp, glc
        
        region a:118-344 [130461]
      10. 2ch6
        automatically matched to 2CH5 A:1-117
        complexed with adp, glc
        
        region a:2-117 [130462]
      11. 2ch6
        automatically matched to 2CH5 A:118-344
        complexed with adp, glc
        
        region b:118-344 [130463]
      12. 2ch6
        automatically matched to 2CH5 A:1-117
        complexed with adp, glc
        
        region b:6-117 [130464]
      13. 2ch6
        automatically matched to 2CH5 A:118-344
        complexed with adp, glc
        
        region c:118-344 [130465]
      14. 2ch6
        automatically matched to 2CH5 A:1-117
        complexed with adp, glc
        
        region c:2-117 [130466]
      15. 2ch6
        automatically matched to 2CH5 A:118-344
        complexed with adp, glc
        
        region d:118-344 [130467]
      16. 2ch6
        automatically matched to 2CH5 A:1-117
        complexed with adp, glc
        
        region d:2-117 [130468]
3. Acetokinase-like [53080] (3)
  1. Acetate kinase [53081]
    1. Archaeon Methanosarcina thermophila [TaxId: 2210] [53082] (6)
      SQ P38502 1-399
      1. 1g99
        complexed with adp, so4
        
        region a:1-197 [33457]
        region a:198-398 [33458]
        region b:1-197 [33459]
        region b:198-398 [33460]
      2. 1tuu
        automatically matched to d1g99a1
        complexed with adp, amp, nh4, pis, so4
        
        region a:1-197 [119343]
      3. 1tuu
        automatically matched to d1g99a2
        complexed with adp, amp, nh4, pis, so4
        
        region a:198-398 [119344]
      4. 1tuu
        automatically matched to d1g99a1
        complexed with adp, amp, nh4, pis, so4
        
        region b:1-197 [119345]
      5. 1tuu
        automatically matched to d1g99a2
        complexed with adp, amp, nh4, pis, so4
        
        region b:198-398 [119346]
      6. 1tuy
        complexed with acy, adp, af3, so4
        
        region a:1-197 [112666]
        region a:198-398 [112667]
        region b:1-197 [112668]
        region b:198-398 [112669]
  2. butyrate kinase 2 [142460]
    1. Thermotoga maritima [TaxId: 2336] [142461] (18)
      SQ Q9X278 1-172! SQ Q9X278 173-375
      1. 1saz
        complexed with acp, fmt, na
        
        region a:1-172 [118925]
      2. 1saz
        complexed with acp, fmt, na
        
        region a:173-375 [118926]
      3. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region a:1-172 [121811]
      4. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region a:173-373 [121812]
      5. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region b:1-172 [121813]
      6. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region b:173-371 [121814]
      7. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region c:1-172 [121815]
      8. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region c:173-371 [121816]
      9. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region d:1-172 [121817]
      10. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region d:173-373 [121818]
      11. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region e:1-172 [121819]
      12. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region e:173-371 [121820]
      13. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region f:1-172 [121821]
      14. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region f:173-372 [121822]
      15. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region g:1-172 [121823]
      16. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region g:173-373 [121824]
      17. 1x9j
        automatically matched to 1SAZ A:1-172
        complexed with cit, gol, na, po4
        
        region h:1-172 [121825]
      18. 1x9j
        automatically matched to 1SAZ A:173-375
        complexed with cit, gol, na, po4
        
        region h:173-372 [121826]
  3. Propionate kinase [142462]
    1. Salmonella typhimurium [TaxId: 90371] [142463] (10)
      SQ O06961 193-397! SQ O06961 4-192
      1. 2e1z
        automatically matched to d1x3ma2
        complexed with b4p, edo
        
        region a:4-192 [146631]
      2. 2e1z
        automatically matched to d1x3ma1
        complexed with b4p, edo
        
        region a:193-397 [146632]
      3. 1x3m
        complexed with adp
        
        region a:193-397 [121664]
      4. 1x3m
        complexed with adp
        
        region a:4-192 [121665]
      5. 1x3n
        automatically matched to 1X3M A:193-397
        complexed with anp, edo
        
        region a:193-397 [121666]
      6. 1x3n
        automatically matched to 1X3M A:4-192
        complexed with anp, edo
        
        region a:4-192 [121667]
      7. 2e20
        automatically matched to d1x3ma2
        complexed with b4p, edo
        
        region a:4-192 [146633]
      8. 2e20
        automatically matched to d1x3ma1
        complexed with b4p, edo
        
        region a:193-397 [146634]
      9. 2e1y
        automatically matched to d1x3ma2
        
        region a:4-192 [146629]
      10. 2e1y
        automatically matched to d1x3ma1
        
        region a:193-397 [146630]
4. ATPase domain of dehydratase reactivase alpha subunit [82440] (2)
  1. ATPase domain of the glycerol dehydratase reactivase alpha subunit [82441]
    includes the insert and linker domains
    1. Klebsiella pneumoniae [TaxId: 573] [82442] (1)
      1. 1nbw
        complexed with ca
        
        region a:2-91,a:257-405 [80394]
        region a:406-607 [80395]
        region c:3-91,c:257-405 [80398]
        region c:406-606 [80399]
  2. Diol dehydratase-reactivating factor large subunit DdrA [142464]
    1. Klebsiella oxytoca [TaxId: 571] [142465] (8)
      SQ O68195 1-92,255-403! SQ O68195 404-606
      1. 2d0o
        complexed with adp, mg, so4
        
        region a:1-92,a:255-403 [131076]
      2. 2d0o
        complexed with adp, mg, so4
        
        region a:404-606 [131077]
      3. 2d0o
        automatically matched to 2D0O A:1-92,A:255-403
        complexed with adp, mg, so4
        
        region c:1-92,c:255-403 [131080]
      4. 2d0o
        automatically matched to 2D0O A:404-606
        complexed with adp, mg, so4
        
        region c:404-604 [131081]
      5. 2d0p
        automatically matched to 2D0O A:1-92,A:255-403
        complexed with ca, so4
        
        region a:1-92,a:255-403 [131084]
      6. 2d0p
        automatically matched to 2D0O A:404-606
        complexed with ca, so4
        
        region a:404-606 [131085]
      7. 2d0p
        automatically matched to 2D0O A:1-92,A:255-403
        complexed with ca, so4
        
        region c:1-92,c:255-403 [131088]
      8. 2d0p
        automatically matched to 2D0O A:404-606
        complexed with ca, so4
        
        region c:404-605 [131089]
5. Hexokinase [53083] (5)
  1. Hexokinase [53084]
    1. Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932] [64092] (1)
      1. 1ig8
        complexed with sul
        
        region a:18-224 [64746]
        region a:225-486 [64747]
    2. Blood fluke (Schistosoma mansoni) [TaxId: 6183] [53085] (1)
      1. 1bdg
        complexed with glc, so4
        
        region a:13-222 [33461]
        region a:223-460 [33462]
  2. Glucokinase [102479]
    Hexokinase D
    1. Human (Homo sapiens) [TaxId: 9606] [102480] (2)
      1. 1v4s
        complexed with agc, mrk, na
        
        region a:14-218 [100309]
        region a:219-461 [100310]
      2. 1v4t
        complexed with na, so4
        
        region a:15-218 [100311]
        region a:219-461 [100312]
  3. Mammalian type I hexokinase [53086]
    further duplication: consists of two very similar lobes
    1. Human (Homo sapiens) [TaxId: 9606] [53087] (5)
      1. 1cza
        complexed with adp, g6p, glc; mutant
        
        region n:16-222 [33463]
        region n:223-465 [33464]
        region n:466-670 [33465]
        region n:671-913 [33466]
      2. 1qha
        
        region a:12-222 [33467]
        region a:223-465 [33468]
        region a:466-670 [33469]
        region a:671-914 [33470]
        region b:16-222 [33471]
        region b:223-465 [33472]
        region b:466-670 [33473]
        region b:671-914 [33474]
      3. 1hkc
        complexed with glc, k, po4
        
        region a:16-222 [33475]
        region a:223-465 [33476]
        region a:466-670 [33477]
        region a:671-914 [33478]
      4. 1dgk
        complexed with adp, glc, po4; mutant
        
        region n:16-222 [33487]
        region n:223-465 [33488]
        region n:466-670 [33489]
        region n:671-913 [33490]
      5. 1hkb
        complexed with ca, g6p, glc
        
        region a:16-222 [33479]
        region a:223-465 [33480]
        region a:466-670 [33481]
        region a:671-914 [33482]
        region b:16-222 [33483]
        region b:223-465 [33484]
        region b:466-670 [33485]
        region b:671-914 [33486]
    2. Rat (Rattus norvegicus) [TaxId: 10116] [53088] (1)
      1. 1bg3
        complexed with ca, g6p, glc
        
        region a:1-222 [33491]
        region a:223-465 [33492]
        region a:466-670 [33493]
        region a:671-911 [33494]
        region b:1-222 [33495]
        region b:223-465 [33496]
        region b:466-670 [33497]
        region b:671-911 [33498]
6. Glycerol kinase [53089] (2)
  1. Glycerol kinase [53090]
    1. Escherichia coli [TaxId: 562] [53091] (28)
      1. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region a:2-253 [139471]
      2. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region a:254-500 [139472]
      3. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region b:2-253 [139473]
      4. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region b:254-500 [139474]
      5. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region c:2-253 [139475]
      6. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region c:254-500 [139476]
      7. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region d:2-253 [139477]
      8. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region d:254-500 [139478]
      9. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region e:2-253 [139479]
      10. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region e:254-500 [139480]
      11. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region f:2-253 [139481]
      12. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region f:254-500 [139482]
      13. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region g:2-253 [139483]
      14. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region g:254-500 [139484]
      15. 2p3r
        automatically matched to d1bu6y1
        complexed with gol; mutant
        
        region h:2-253 [139485]
      16. 2p3r
        automatically matched to d1bu6x2
        complexed with gol; mutant
        
        region h:254-500 [139486]
      17. 1gla
        complexed with gol
        
        region g:4-253 [33507]
        region g:254-499 [33508]
      18. 1glb
        complexed with adp, gol
        
        region g:4-253 [33517]
        region g:254-499 [33518]
      19. 1bu6
        complexed with gol, so4; mutant
        
        region o:3-253 [33499]
        region o:254-499 [33500]
        region x:3-253 [33501]
        region x:254-500 [33502]
        region y:2-253 [33503]
        region y:254-500 [33504]
        region z:3-253 [33505]
        region z:254-500 [33506]
      20. 1glf
        complexed with adp, gol, po4; mutant
        
        region o:2-253 [33509]
        region o:254-499 [33510]
        region x:3-253 [33511]
        region x:254-500 [33512]
        region y:2-253 [33513]
        region y:254-500 [33514]
        region z:3-253 [33515]
        region z:254-500 [33516]
      21. 1glc
        complexed with adp, g3p, mg, zn
        
        region g:4-253 [33519]
        region g:254-499 [33520]
      22. 1gld
        complexed with adp, g3p, mn
        
        region g:4-253 [33521]
        region g:254-499 [33522]
      23. 1gle
        complexed with adp, g3p, zn
        
        region g:4-253 [33523]
        region g:254-499 [33524]
      24. 1glj
        complexed with ata, gol, mg; mutant
        
        region o:2-253 [33525]
        region o:254-499 [33526]
        region y:2-253 [33527]
        region y:254-499 [33528]
      25. 1bwf
        complexed with atf, gol, mg; mutant
        
        region o:2-253 [33529]
        region o:254-499 [33530]
        region y:2-253 [33531]
        region y:254-499 [33532]
      26. 1gll
        complexed with acp, gol, mg; mutant
        
        region o:2-253 [33533]
        region o:254-499 [33534]
        region y:2-253 [33535]
        region y:254-499 [33536]
      27. 1bot
        complexed with epe, gol
        
        region o:3-253 [33537]
        region o:254-499 [33538]
        region z:2-253 [33539]
        region z:254-499 [33540]
      28. 1bo5
        complexed with fbp, gol
        
        region o:2-253 [33541]
        region o:254-499 [33542]
        region z:2-253 [33543]
        region z:254-499 [33544]
    2. Enterococcus casseliflavus [TaxId: 37734] [117641] (2)
      SQ O34153 5-491
      1. 1r59
        
        region o:5-256 [111697]
        region o:257-491 [111698]
        region x:5-256 [111699]
        region x:257-491 [111700]
      2. 1xup
        complexed with gol
        
        region o:6-256 [116062]
        region o:257-491 [116063]
        region x:6-256 [116064]
        region x:257-491 [116065]
7. Glucokinase [110627] (1)
  Pfam 02685
  1. Glucokinase Glk [110628]
    1. Escherichia coli [TaxId: 562] [110629] (2)
      SQ P46880 P0A6V8
      1. 1sz2
        complexed with bgc
        
        region a:3-321 [112169]
        region b:3-321 [112170]
      2. 1q18
        
        region a:2-111 [104470]
        region a:112-321 [104471]
        region b:2-111 [104472]
        region b:112-321 [104473]
8. Ppx/GppA phosphatase [110630] (2)
  Pfam 02541
  1. Exopolyphosphatase Ppx [110631]
    1. Aquifex aeolicus [TaxId: 63363] [110632] (6)
      SQ O67040
      1. 1t6c
        complexed with ca, cl, iod, mpd
        
        region a:7-132 [106558]
        region a:133-312 [106559]
      2. 1t6d
        complexed with cl, trs; mutant
        
        region a:8-132 [106560]
        region a:133-310 [106561]
        region b:8-132 [106562]
        region b:133-307 [106563]
      3. 2j4r
        automatically matched to d1t6ca1
        complexed with g4p; mutant
        
        region a:7-132 [147882]
      4. 2j4r
        automatically matched to d1t6ca2
        complexed with g4p; mutant
        
        region a:133-306 [147883]
      5. 2j4r
        automatically matched to d1t6ca1
        complexed with g4p; mutant
        
        region b:7-132 [147884]
      6. 2j4r
        automatically matched to d1t6ca2
        complexed with g4p; mutant
        
        region b:133-306 [147885]
    2. Escherichia coli [TaxId: 562] [142466] (12)
      SQ P0AFL6 11-134! SQ P0AFL6 135-311
      1. 1u6z
        complexed with so4
        
        region a:12-135 [119609]
      2. 1u6z
        complexed with so4
        
        region a:136-312 [119610]
      3. 1u6z
        automatically matched to 1U6Z A:12-135
        complexed with so4
        
        region b:12-135 [119612]
      4. 1u6z
        automatically matched to 1U6Z A:136-312
        complexed with so4
        
        region b:136-312 [119613]
      5. 2flo
        automatically matched to 1U6Z A:12-135
        
        region a:12-135 [133734]
      6. 2flo
        automatically matched to 1U6Z A:136-312
        
        region a:136-312 [133735]
      7. 2flo
        automatically matched to 1U6Z A:12-135
        
        region b:12-135 [133737]
      8. 2flo
        automatically matched to 1U6Z A:136-312
        
        region b:136-312 [133738]
      9. 2flo
        automatically matched to 1U6Z A:12-135
        
        region c:12-135 [133740]
      10. 2flo
        automatically matched to 1U6Z A:136-312
        
        region c:136-312 [133741]
      11. 2flo
        automatically matched to 1U6Z A:12-135
        
        region d:12-135 [133743]
      12. 2flo
        automatically matched to 1U6Z A:136-312
        
        region d:136-312 [133744]
9. YeaZ-like [110633] (2)
  Pfam 00814; ubiquitous cytoplasmic protein; annotated as Glycoprotease (Peptidase_M22 family) on the basis of one member's known extracellular activity
  1. Hypothetical protein YeaZ [110634]
    1. Escherichia coli [TaxId: 562] [110635] (1)
      SQ P76256
      1. 1okj
        complexed with gd3
        
        region a:1-106 [103998]
        region a:107-216 [103999]
        region b:1-106 [104000]
        region b:107-216 [104001]
        region c:1-106 [104002]
        region c:107-216 [104003]
        region d:1-106 [104004]
        region d:107-216 [104005]
  2. Hypothetical protein TM0874 [142467]
    1. Thermotoga maritima [TaxId: 2336] [142468] (4)
      SQ Q9WZX7 1-103! SQ Q9WZX7 104-193
      1. 2a6a
        complexed with unl
        
        region a:1-103 [126231]
      2. 2a6a
        complexed with unl
        
        region a:104-193 [126232]
      3. 2a6a
        automatically matched to 2A6A A:1-103
        complexed with unl
        
        region b:1-103 [126233]
      4. 2a6a
        automatically matched to 2A6A A:104-193
        complexed with unl
        
        region b:104-187 [126234]
10. ROK [110636] (8)
  Pfam 00480
  1. Inorganic polyphosphate/ATP-glucomannokinase PPGMK [110637]
    1. Arthrobacter sp. KM [TaxId: 184230] [110638] (1)
      SQ Q7WT42 11-263 # Fragment
      1. 1woq
        complexed with glc, ips
        
        region a:11-139 [109462]
        region a:140-263 [109463]
        region b:11-139 [109464]
        region b:140-263 [109465]
  2. Putative fructokinase YhdR [117642]
    1. Bacillus subtilis [TaxId: 1423] [117643] (1)
      SQ O05510
      1. 1xc3
        Structural genomics target
        complexed with gol, pt, zn
        
        region a:1-118 [115102]
        region a:119-294 [115103]
  3. N-acetylglucosamine kinase [142469]
    Transcriptional regulator, XylR-related
    1. Thermotoga maritima [TaxId: 2336] [142470] (2)
      SQ Q9X0V1 200-368! SQ Q9X0V1 72-199
      TM1224
      1. 2hoe
        complexed with gol, k
        
        region a:200-368 [136640]
      2. 2hoe
        complexed with gol, k
        
        region a:72-199 [136641]
  4. N-acetylmannosamine kinase NanK [142471]
    1. Escherichia coli [TaxId: 562] [142472] (4)
      SQ P45425 1-119! SQ P45425 120-289
      1. 2aa4
        complexed with zn
        
        region a:1-119 [126465]
      2. 2aa4
        complexed with zn
        
        region a:120-289 [126466]
      3. 2aa4
        automatically matched to 2AA4 A:1-119
        complexed with zn
        
        region b:1-119 [126467]
      4. 2aa4
        automatically matched to 2AA4 A:120-289
        complexed with zn
        
        region b:120-289 [126468]
  5. Mlc protein [142473]
    Making large colonies protein
    1. Escherichia coli [TaxId: 562] [142474] (12)
      SQ P50456 211-406! SQ P50456 82-210
      1. 1z6r
        complexed with zn; mutant
        
        region a:82-210 [124558]
      2. 1z6r
        complexed with zn; mutant
        
        region a:211-406 [124559]
      3. 1z6r
        automatically matched to 1Z6R A:82-210
        complexed with zn; mutant
        
        region b:82-210 [124561]
      4. 1z6r
        automatically matched to 1Z6R A:211-406
        complexed with zn; mutant
        
        region b:211-406 [124562]
      5. 1z6r
        automatically matched to 1Z6R A:82-210
        complexed with zn; mutant
        
        region c:82-210 [124564]
      6. 1z6r
        automatically matched to 1Z6R A:211-406
        complexed with zn; mutant
        
        region c:211-406 [124565]
      7. 1z6r
        automatically matched to 1Z6R A:82-210
        complexed with zn; mutant
        
        region d:82-210 [124567]
      8. 1z6r
        automatically matched to 1Z6R A:211-406
        complexed with zn; mutant
        
        region d:211-406 [124568]
      9. 3bp8
        automatically matched to d1z6ra2
        complexed with act, zn
        
        region a:82-210 [155464]
      10. 3bp8
        automatically matched to d1z6ra3
        complexed with act, zn
        
        region a:211-406 [155465]
      11. 3bp8
        automatically matched to d1z6ra2
        complexed with act, zn
        
        region b:82-210 [155467]
      12. 3bp8
        automatically matched to d1z6ra3
        complexed with act, zn
        
        region b:211-406 [155468]
  6. Putative regulator protein YcfX [142475]
    1. Salmonella typhimurium [TaxId: 90371] [142476] (2)
      SQ Q8ZPZ9 1-117! SQ Q8ZPZ9 118-303
      1. 2ap1
        complexed with na, zn
        
        region a:118-303 [127108]
      2. 2ap1
        complexed with na, zn
        
        region a:1-117 [127109]
  7. Hypothetical protein SP2142 [142477]
    1. Streptococcus pneumoniae [TaxId: 1313] [142478] (2)
      SQ Q97NB0 1-114! SQ Q97NB0 115-289
      1. 2gup
        complexed with suc, trs
        
        region a:1-114 [135744]
      2. 2gup
        complexed with suc, trs
        
        region a:115-289 [135745]
  8. Transcriptional regulator VC2007 [142479]
    1. Vibrio cholerae [TaxId: 666] [142480] (2)
      SQ Q9KQJ1 209-405! SQ Q9KQJ1 81-208
      1. 1z05
        complexed with bme, gol, so4, zn
        
        region a:209-405 [124299]
      2. 1z05
        complexed with bme, gol, so4, zn
        
        region a:81-208 [124300]
11. Cyto-EpsL domain [117644] (1)
  N-terminal part of Pfam 05134
  1. Cytoplasmic domain of general secretion pathway protein L, EpsL [117645]
    1. Vibrio cholerae [TaxId: 666] [117646] (7)
      SQ P45782 6-244
      1. 2bh1
        automatically matched to 1YF5 L:146-239
        complexed with ca
        
        region a:146-239 [128506]
      2. 2bh1
        automatically matched to 1YF5 L:2-145
        complexed with ca
        
        region a:2-145 [128507]
      3. 2bh1
        automatically matched to 1YF5 L:146-239
        complexed with ca
        
        region b:146-239 [128508]
      4. 2bh1
        automatically matched to 1YF5 L:2-145
        complexed with ca
        
        region b:2-145 [128509]
      5. 1yf5
        
        region l:146-239 [123049]
      6. 1yf5
        
        region l:2-145 [123050]
      7. 1w97
        
        region l:2-145 [114406]
        region l:146-239 [114407]
12. Ta0583-like [142481] (1)
  1. Hypothetical protein Ta0583 [142482]
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [142483] (10)
      SQ Q9HKL4 1-164! SQ Q9HKL4 165-325
      1. 2fsj
        complexed with gol
        
        region a:165-325 [134025]
      2. 2fsj
        complexed with gol
        
        region a:1-164 [134026]
      3. 2fsk
        automatically matched to 2FSJ A:165-325
        
        region a:165-325 [134027]
      4. 2fsk
        automatically matched to 2FSJ A:1-164
        
        region a:1-164 [134028]
      5. 2fsk
        automatically matched to 2FSJ A:165-325
        
        region b:165-325 [134029]
      6. 2fsk
        automatically matched to 2FSJ A:1-164
        
        region b:1-164 [134030]
      7. 2fsn
        automatically matched to 2FSJ A:165-325
        complexed with adp, mg
        
        region a:165-325 [134031]
      8. 2fsn
        automatically matched to 2FSJ A:1-164
        complexed with adp, mg
        
        region a:1-164 [134032]
      9. 2fsn
        automatically matched to 2FSJ A:165-325
        complexed with adp, mg
        
        region b:165-325 [134033]
      10. 2fsn
        automatically matched to 2FSJ A:1-164
        complexed with adp, mg
        
        region b:1-164 [134034]
13. CoaX-like [142484] (3)
  Pfam 03309; Bordetella pertussis Bvg accessory factor family, Baf
  1. Type III pantothenate kinase, CoaX [142485]
    1. Thermotoga maritima [TaxId: 2336] [142486] (48)
      SQ Q9WZY5 1-118! SQ Q9WZY5 119-245
      1. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region a:1-118 [155198]
      2. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region a:119-245 [155199]
      3. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region b:1-118 [155200]
      4. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region b:119-245 [155201]
      5. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region c:1-118 [155202]
      6. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region c:119-245 [155203]
      7. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region d:1-118 [155204]
      8. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region d:119-245 [155205]
      9. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region e:1-118 [155206]
      10. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region e:119-245 [155207]
      11. 3bex
        automatically matched to d2gtda1
        complexed with pau, po4
        
        region f:1-118 [155208]
      12. 3bex
        automatically matched to d2gtda2
        complexed with pau, po4
        
        region f:119-245 [155209]
      13. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region a:1-118 [155222]
      14. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region a:119-245 [155223]
      15. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region b:1-118 [155224]
      16. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region b:119-245 [155225]
      17. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region c:1-118 [155226]
      18. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region c:119-245 [155227]
      19. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region d:1-118 [155228]
      20. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region d:119-245 [155229]
      21. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region e:1-118 [155230]
      22. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region e:119-245 [155231]
      23. 3bf3
        automatically matched to d2gtda1
        complexed with mg, paz
        
        region f:1-118 [155232]
      24. 3bf3
        automatically matched to d2gtda2
        complexed with mg, paz
        
        region f:119-245 [155233]
      25. 2gtd
        
        region a:4-121 [135634]
      26. 2gtd
        
        region a:122-248 [135635]
      27. 2gtd
        automatically matched to 2GTD A:4-121
        
        region b:4-121 [135636]
      28. 2gtd
        automatically matched to 2GTD A:122-248
        
        region b:122-248 [135637]
      29. 2gtd
        automatically matched to 2GTD A:4-121
        
        region c:4-121 [135638]
      30. 2gtd
        automatically matched to 2GTD A:122-248
        
        region c:122-248 [135639]
      31. 2gtd
        automatically matched to 2GTD A:4-121
        
        region d:4-121 [135640]
      32. 2gtd
        automatically matched to 2GTD A:122-248
        
        region d:122-248 [135641]
      33. 2gtd
        automatically matched to 2GTD A:4-121
        
        region e:4-121 [135642]
      34. 2gtd
        automatically matched to 2GTD A:122-248
        
        region e:122-248 [135643]
      35. 2gtd
        automatically matched to 2GTD A:4-121
        
        region f:4-121 [135644]
      36. 2gtd
        automatically matched to 2GTD A:122-248
        
        region f:122-248 [135645]
      37. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region a:1-118 [155210]
      38. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region a:119-245 [155211]
      39. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region b:1-118 [155212]
      40. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region b:119-245 [155213]
      41. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region c:1-118 [155214]
      42. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region c:119-245 [155215]
      43. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region d:1-118 [155216]
      44. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region d:119-245 [155217]
      45. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region e:1-118 [155218]
      46. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region e:119-245 [155219]
      47. 3bf1
        automatically matched to d2gtda1
        complexed with adp, pau
        
        region f:1-118 [155220]
      48. 3bf1
        automatically matched to d2gtda2
        complexed with adp, pau
        
        region f:119-245 [155221]
    2. Pseudomonas aeruginosa [TaxId: 287] [142487] (8)
      SQ Q9HWC1 1-114! SQ Q9HWC1 115-248
      1. 2f9w
        automatically matched to 2F9T A:115-248
        complexed with edo, gol, pau
        
        region a:115-248 [133174]
      2. 2f9w
        automatically matched to 2F9T A:1-114
        complexed with edo, gol, pau
        
        region a:1-114 [133175]
      3. 2f9w
        automatically matched to 2F9T A:115-248
        complexed with edo, gol, pau
        
        region b:115-248 [133176]
      4. 2f9w
        automatically matched to 2F9T A:1-114
        complexed with edo, gol, pau
        
        region b:1-114 [133177]
      5. 2f9t
        
        region a:115-248 [133170]
      6. 2f9t
        
        region a:1-114 [133171]
      7. 2f9t
        automatically matched to 2F9T A:115-248
        
        region b:115-247 [133172]
      8. 2f9t
        automatically matched to 2F9T A:1-114
        
        region b:1-114 [133173]
    3. Campylobacter jejuni [TaxId: 197] [142488] (4)
      SQ Q5HW73 1-82! SQ Q5HW73 83-208
      1. 2nrh
        complexed with so4; mutant
        
        region a:1-82 [138523]
      2. 2nrh
        complexed with so4; mutant
        
        region a:83-208 [138524]
      3. 2nrh
        automatically matched to 2NRH A:1-82
        complexed with so4; mutant
        
        region b:1-82 [138525]
      4. 2nrh
        automatically matched to 2NRH A:83-208
        complexed with so4; mutant
        
        region b:83-207 [138526]
14. Fumble-like [159623] (3)
  Pfam 03630; type II pantothenate kinase-like
  1. Pantothenate kinase 3, PANK3 [159624]
    1. Human (Homo sapiens) [TaxId: 9606] [159625] (8)
      SQ Q9H999 12-152! SQ Q9H999 157-368
      1. 2i7p
        complexed with aco
        
        region a:157-368 [147551]
      2. 2i7p
        complexed with aco
        
        region a:12-152 [147552]
      3. 2i7p
        automatically matched to 2I7P A:157-368
        complexed with aco
        
        region b:157-368 [147553]
      4. 2i7p
        automatically matched to 2I7P A:12-152
        complexed with aco
        
        region b:12-152 [147554]
      5. 2i7p
        automatically matched to 2I7P A:157-368
        complexed with aco
        
        region c:157-365 [147555]
      6. 2i7p
        automatically matched to 2I7P A:12-152
        complexed with aco
        
        region c:12-152 [147556]
      7. 2i7p
        automatically matched to 2I7P A:157-368
        complexed with aco
        
        region d:157-365 [147557]
      8. 2i7p
        automatically matched to 2I7P A:12-152
        complexed with aco
        
        region d:12-152 [147558]
  2. Type II pantothenate kinase, CoaW [159626]
    1. Staphylococcus aureus [TaxId: 1280] [159627] (2)
      SQ Q8NVG0 1-267
      1. 2ews
        complexed with anp, mg
        
        region a:1-267 [146991]
      2. 2ews
        automatically matched to 2EWS A:1-267
        complexed with anp, mg
        
        region b:1-266 [146992]
  3. Pantothenate kinase 1, PANK1 [159628]
    1. Human (Homo sapiens) [TaxId: 9606] [159629] (4)
      SQ Q8TE04 236-381! SQ Q8TE04 382-593
      1. 2i7n
        complexed with aco
        
        region a:236-381 [147547]
      2. 2i7n
        complexed with aco
        
        region a:382-593 [147548]
      3. 2i7n
        automatically matched to 2I7N A:236-381
        complexed with aco
        
        region b:236-381 [147549]
      4. 2i7n
        automatically matched to 2I7N A:382-593
        complexed with aco
        
        region b:382-593 [147550]
Creatinase/prolidase N-terminal domain [53092] (1)
uperfamily
1. Creatinase/prolidase N-terminal domain [53093] (4)
  1. Creatinase [53094]
    1. Pseudomonas putida [TaxId: 303] [53095] (1)
      1. 1chm
        complexed with cms
        
        region a:2-156 [33545]
        region b:2-156 [33546]
    2. Actinobacillus sp. [TaxId: 41114] [75244] (1)
      1. 1kp0
        
        region a:1-156 [72834]
        region b:1-156 [72836]
  2. Aminopeptidase P [53096]
    synonym: Xaa-Pro dipeptidase, prolidase
    1. Escherichia coli [TaxId: 562] [53097] (37)
      1. 2v3z
        automatically matched to d1a16a1
        complexed with cl, mn; mutant
        
        region a:1-176 [152481]
      2. 2v3y
        automatically matched to d1a16a1
        complexed with cl, mn; mutant
        
        region a:1-176 [152479]
      3. 2v3x
        automatically matched to d1a16a1
        complexed with cl, mn; mutant
        
        region a:1-176 [152477]
      4. 2bwv
        automatically matched to d1a16_1
        complexed with cl, mn; mutant
        
        region a:1-176 [129387]
      5. 2bwx
        automatically matched to d1a16_1
        complexed with cl, mn; mutant
        
        region a:1-176 [129391]
      6. 2bws
        automatically matched to d1a16_1
        complexed with cl, mn; mutant
        
        region a:1-176 [129381]
      7. 1wl9
        automatically matched to d1a16_1
        complexed with cl, mn
        
        region a:1-176 [120998]
      8. 1wl6
        automatically matched to d1a16_1
        complexed with cl, ipa, mg, xpe
        
        region a:1-176 [120994]
      9. 1w7v
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region a:1-176 [120691]
      10. 1w7v
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region b:1-176 [120693]
      11. 1w7v
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region c:1-176 [120695]
      12. 1w7v
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region d:1-176 [120697]
      13. 1wlr
        automatically matched to d1a16_1
        complexed with cl, ipa, pg4
        
        region a:1-176 [121011]
      14. 2bwu
        automatically matched to d1a16_1
        complexed with flc, mg, na; mutant
        
        region a:1-176 [129385]
      15. 1wbq
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region a:1-176 [120852]
      16. 1wbq
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region b:1-176 [120854]
      17. 1wbq
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region c:1-176 [120856]
      18. 1wbq
        automatically matched to d1a16_1
        complexed with cl, mg, zn
        
        region d:1-176 [120858]
      19. 2bn7
        automatically matched to d1a16_1
        complexed with flc, leu, mg, mn, pro, zn
        
        region a:1-176 [128820]
      20. 1n51
        complexed with atn, mn
        
        region a:1-176 [91678]
      21. 2bhb
        automatically matched to d1a16_1
        complexed with flc, mg, mrd, zn
        
        region a:1-176 [128520]
      22. 2bh3
        automatically matched to d1a16_1
        complexed with flc, leu, mg, pro, zn
        
        region a:1-176 [128514]
      23. 2bhc
        automatically matched to d1a16_1
        complexed with flc, mg, na
        
        region a:1-176 [128522]
      24. 2bwy
        automatically matched to d1a16_1
        complexed with flc, mg, mn, so4; mutant
        
        region a:1-176 [129393]
      25. 2bha
        automatically matched to d1a16_1
        complexed with flc, mg
        
        region a:1-176 [128518]
      26. 1a16
        complexed with mn
        
        region a:1-176 [33548]
      27. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region a:1-176 [120590]
      28. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region b:1-176 [120592]
      29. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region c:1-176 [120594]
      30. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region d:1-176 [120596]
      31. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region e:1-176 [120598]
      32. 1w2m
        automatically matched to d1a16_1
        complexed with ca, cl, ipa
        
        region f:1-176 [120600]
      33. 1m35
        complexed with mn
        
        region a:1-176 [84770]
        region b:1-176 [84772]
        region c:1-176 [84774]
        region d:1-176 [84776]
        region e:1-176 [84778]
        region f:1-176 [84780]
      34. 2bhd
        automatically matched to d1a16_1
        complexed with flc, mg
        
        region a:1-176 [128524]
      35. 2bww
        automatically matched to d1a16_1
        complexed with flc, mg, mn, mrd; mutant
        
        region a:1-176 [129389]
      36. 2bwt
        automatically matched to d1a16_1
        complexed with flc, mg, mn, mpd; mutant
        
        region a:1-176 [129383]
      37. 1jaw
        complexed with act, mn
        
        region a:1-176 [33549]
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [102481] (1)
      1. 1pv9
        complexed with zn
        
        region a:8-124 [95157]
        region b:4-124 [95159]
Ribonuclease H-like [53098] (14)
consists of one domain of this fold
uperfamily
1. Ribonuclease H [53099] (11)
  1. RNase H (RNase HI) [53100]
    1. Escherichia coli [TaxId: 562] [53101] (37)
      SQ P0A7Y4
      1. 1jl1
        mutant
        
        chain a [66821]
      2. 1f21
        mutant
        
        chain a [33550]
      3. 2rn2
        
        chain a [33551]
      4. 1jxb
        mutant
        
        chain a [71931]
      5. 1rbu
        mutant
        
        chain a [33552]
      6. 1rbv
        mutant
        
        chain a [33553]
      7. 1rbt
        mutant
        
        chain a [33555]
      8. 1wsh
        mutant
        
        chain a [114849]
        chain b [114850]
        chain c [114851]
        chain d [114852]
      9. 1lav
        mutant
        
        chain a [33554]
      10. 1law
        mutant
        
        chain a [33557]
      11. 1g15
        complexed with mn; mutant
        
        chain a [60197]
      12. 1rbr
        mutant
        
        chain a [33556]
      13. 1kva
        mutant
        
        chain a [33559]
      14. 1rdb
        mutant
        
        chain a [33561]
      15. 1wsi
        mutant
        
        chain a [114853]
        chain b [114854]
        chain c [114855]
        chain d [114856]
      16. 1rbs
        mutant
        
        chain a [33558]
      17. 1kvc
        mutant
        
        chain a [33560]
      18. 1wsj
        mutant
        
        chain a [114857]
        chain b [114858]
        chain c [114859]
        chain d [114860]
        chain e [114861]
        chain f [114862]
        chain g [114863]
        chain h [114864]
      19. 1kvb
        mutant
        
        chain a [33562]
      20. 1rnh
        complexed with so4
        
        chain a [33563]
      21. 1wsg
        complexed with mn; mutant
        
        region a:1-155 [121234]
      22. 1wsg
        automatically matched to 1WSG A:1-155
        complexed with mn; mutant
        
        region b:1-155 [121235]
      23. 1wsg
        automatically matched to 1WSG A:1-155
        complexed with mn; mutant
        
        region c:1-155 [121236]
      24. 1wsg
        automatically matched to 1WSG A:1-155
        complexed with mn; mutant
        
        region d:1-155 [121237]
      25. 1gob
        mutant
        
        chain a [33565]
      26. 1goa
        mutant
        
        chain a [33564]
      27. 1goc
        mutant
        
        chain a [33566]
      28. 1rda
        mutant
        
        chain a [33567]
      29. 1wsf
        complexed with mn; mutant
        
        region a:1-155 [121230]
      30. 1wsf
        automatically matched to 1WSF A:1-155
        complexed with mn; mutant
        
        region b:1-155 [121231]
      31. 1wsf
        automatically matched to 1WSF A:1-155
        complexed with mn; mutant
        
        region c:1-155 [121232]
      32. 1wsf
        automatically matched to 1WSF A:1-155
        complexed with mn; mutant
        
        region d:1-155 [121233]
      33. 1wse
        complexed with mn; mutant
        
        region a:1-155 [121228]
      34. 1wse
        automatically matched to 1WSE A:1-155
        complexed with mn; mutant
        
        region b:1-155 [121229]
      35. 1rdc
        mutant
        
        chain a [33568]
      36. 1rdd
        complexed with mg
        
        chain a [33569]
      37. 1rch
        
        chain a [33570]
    2. Thermus thermophilus [TaxId: 274] [53102] (1)
      1. 1ril
        
        chain a [33571]
    3. synthetic, Escherichia coli/Thermus thermophilus chimera [69532] (1)
      1. 1jl2
        
        chain a [66822]
        chain b [66823]
        chain c [66824]
        chain d [66825]
  2. Class II ribonuclease H (RNase HII) [53103]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53104] (1)
      1. 1eke
        complexed with mes
        
        chain a [33572]
        chain b [33573]
    2. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [64093] (2)
      1. 1i39
        
        chain a [61585]
      2. 1i3a
        complexed with nco
        
        chain a [61586]
    3. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [64094] (2)
      1. 1io2
        
        chain a [62612]
      2. 2dfh
        automatically matched to d1io2a_
        mutant
        
        region a:1-212 [131472]
    4. Archaeon Pyrococcus horikoshii [TaxId: 53953] [110639] (2)
      SQ O59351
      1. 1uax
        
        chain a [107764]
        chain b [107765]
      2. 1x1p
        automatically matched to d1uaxa_
        
        region a:1-196 [121594]
    5. Thermotoga maritima [TaxId: 2336] [142489] (1)
      SQ Q9X017 1-221
      1. 2etj
        complexed with cl, edo, mg
        
        region a:1-221 [132360]
  3. HIV RNase H (Domain of reverse transcriptase) [53105]
    1. Human immunodeficiency virus type 1 [TaxId: 11676] [53106] (88)
      SQ P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! SQ P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! SQ P04585 158-698 # chain A coverage; chain B is shorter: 159-595
      1. 1vrt
        complexed with cya, mg, nev
        
        region a:430-539 [33574]
      2. 1s1t
        complexed with po4, uc1; mutant
        
        region a:430-539 [105205]
      3. 1c1b
        complexed with gca
        
        region a:430-543 [33605]
      4. 1vru
        complexed with aap, cya
        
        region a:430-539 [33575]
      5. 1jla
        complexed with tnk; mutant
        
        region a:430-553 [66833]
      6. 1rt1
        complexed with mkc
        
        region a:430-539 [33579]
      7. 1rth
        complexed with cya, u05
        
        region a:430-543 [33576]
      8. 1eet
        complexed with bfu; mutant
        
        region a:430-557 [33608]
      9. 1jkh
        complexed with efz; mutant
        
        region a:430-554 [66797]
      10. 1ikx
        complexed with pnu; mutant
        
        region a:430-557 [62533]
      11. 1c0u
        complexed with bm5
        
        region a:430-539 [33610]
      12. 1hrh
        
        region a:432-556 [33577]
        region b:432-554 [33578]
      13. 1rt2
        complexed with tnk
        
        region a:430-543 [33580]
      14. 1tkt
        complexed with h12, mg, po4
        
        region a:430-537 [112482]
      15. 1rev
        complexed with mg, trb
        
        region a:430-539 [33582]
      16. 1c0t
        complexed with bm1
        
        region a:430-539 [33606]
      17. 1fk9
        complexed with efz
        
        region a:430-539 [33607]
      18. 1klm
        complexed with spp
        
        region a:430-539 [33583]
      19. 1c1c
        complexed with 612
        
        region a:430-539 [33609]
      20. 1lwc
        complexed with csd, nvp, po4; mutant
        
        region a:430-537 [78262]
      21. 1s1w
        complexed with uc1; mutant
        
        region a:430-539 [105214]
      22. 1jlg
        complexed with uc1; mutant
        
        region a:430-539 [66848]
      23. 1s1v
        complexed with tnk; mutant
        
        region a:430-539 [105211]
      24. 1hmv
        complexed with mg
        
        region a:430-554 [33587]
      25. 1hmv
        duplicate of 1HMV A:430-554
        complexed with mg
        
        region c:430-554 [118502]
      26. 1hmv
        duplicate of 1HMV A:430-554
        complexed with mg
        
        region e:430-554 [118505]
      27. 1hmv
        duplicate of 1HMV A:430-554
        complexed with mg
        
        region g:430-554 [118508]
      28. 1rtj
        complexed with cya
        
        region a:430-543 [33581]
      29. 1tkx
        complexed with gwb
        
        region a:430-537 [112485]
      30. 1ep4
        complexed with s11
        
        region a:430-539 [33614]
      31. 1lwe
        complexed with csd, nvp, po4; mutant
        
        region a:430-554 [78267]
      32. 1dtt
        complexed with ftc
        
        region a:430-543 [33611]
      33. 1tl3
        complexed with h20, po4
        
        region a:430-537 [112496]
      34. 1tkz
        complexed with h16, po4
        
        region a:430-537 [112490]
      35. 1jlf
        complexed with nvp; mutant
        
        region a:430-539 [66845]
      36. 1iky
        complexed with msd; mutant
        
        region a:430-557 [62536]
      37. 1ikw
        complexed with efz; mutant
        
        region a:430-557 [62530]
      38. 1fko
        complexed with efz; mutant
        
        region a:430-543 [33612]
      39. 1rt6
        complexed with po4, uc3
        
        region a:430-539 [33613]
      40. 1rt5
        complexed with po4, uc2
        
        region a:430-542 [33615]
      41. 1rt4
        complexed with po4, uc1
        
        region a:430-542 [33618]
      42. 1rti
        complexed with cya, hef
        
        region a:430-543 [33585]
      43. 1lwf
        complexed with csd, nvp; mutant
        
        region a:430-554 [78270]
      44. 1jlb
        complexed with nvp; mutant
        
        region a:430-554 [66836]
      45. 1lw0
        complexed with csd, nvp, po4; mutant
        
        region a:430-537 [78248]
      46. 1dlo
        mutant
        
        region a:430-556 [33584]
      47. 1s1x
        complexed with nvp; mutant
        
        region a:430-539 [105217]
      48. 1dtq
        complexed with fpt
        
        region a:430-539 [33616]
      49. 1fkp
        complexed with nvp; mutant
        
        region a:430-542 [33617]
      50. 1tl1
        complexed with h18, po4
        
        region a:430-537 [112493]
      51. 1tv6
        complexed with cp9
        
        region a:430-539 [107347]
      52. 1jlq
        complexed with sbn
        
        region a:430-540 [63173]
      53. 1lw2
        complexed with csd, po4, u05; mutant
        
        region a:430-539 [78251]
      54. 1s9e
        complexed with adb; mutant
        
        region a:430-552 [98752]
      55. 1r0a
        complexed with 2da, glc, gol, mg
        
        region a:430-558 [104676]
      56. 1ikv
        complexed with efz; mutant
        
        region a:430-557 [62527]
      57. 1rt3
        complexed with u05; mutant
        
        region a:430-537 [33590]
      58. 1jlc
        complexed with ftc; mutant
        
        region a:430-547 [66839]
      59. 1hqe
        mutant
        
        region a:430-554 [61130]
      60. 1s9g
        complexed with abz; mutant
        
        region a:430-543 [98755]
      61. 1s1u
        complexed with nvp; mutant
        
        region a:430-539 [105208]
      62. 1rt7
        complexed with po4, uc4
        
        region a:430-539 [33619]
      63. 1hni
        complexed with aaa; mutant
        
        region a:430-558 [33586]
      64. 1rtd
        complexed with mg, ttp; mutant
        
        region a:430-554 [33591]
        region c:430-554 [33592]
      65. 1jle
        mutant
        
        region a:430-549 [66842]
      66. 1rdh
        CA-atoms only
        
        region a:432-556 [33588]
        region b:432-556 [33589]
      67. 1hqu
        complexed with hby; mutant
        
        region a:430-556 [61157]
      68. 1qe1
        mutant
        
        region a:430-556 [33593]
      69. 1s6q
        complexed with tpb; mutant
        
        region a:430-552 [98601]
      70. 1hpz
        complexed with aap; mutant
        
        region a:430-556 [61119]
      71. 1t03
        complexed with mg, mrg, tfo; mutant
        
        region a:430-558 [99053]
      72. 1sv5
        complexed with 65b; mutant
        
        region a:430-552 [99016]
      73. 2hmi
        protein/protein/DNA complex; mutant
        
        region a:430-558 [33604]
      74. 1hnv
        complexed with tbo; mutant
        
        region a:430-558 [33594]
      75. 1s6p
        complexed with iet, mg; mutant
        
        region a:430-552 [98598]
      76. 1suq
        complexed with 185, mg; mutant
        
        region a:430-552 [99003]
      77. 1n6q
        complexed with atm, mg, mrg; mutant
        
        region a:430-558 [80204]
      78. 1t05
        complexed with ddg, gol, mg, mrg, tnv; mutant
        
        region a:430-554 [99060]
      79. 1n5y
        complexed with atm, mg, mrg; mutant
        
        region a:430-558 [80057]
      80. 1uwb
        complexed with tbo; mutant
        
        region a:430-558 [33596]
      81. 1bqm
        complexed with hby; mutant
        
        region a:430-556 [33597]
      82. 1tvr
        complexed with tb9; mutant
        
        region a:430-558 [33595]
      83. 1hys
        mutant
        
        region a:430-553 [61417]
      84. 1bqn
        complexed with hby; mutant
        
        region a:430-558 [33599]
      85. 3hvt
        complexed with nev
        
        region a:430-556 [33598]
      86. 1j5o
        mutant
        
        region a:430-558 [71568]
      87. 1hvu
        protein/RNA complex
        
        region a:430-554 [33600]
        region d:430-554 [33601]
        region g:430-554 [33602]
        region j:430-554 [33603]
      88. 1o1w
        RNase H domain only
        
        chain a [81078]
    2. Human immunodeficiency virus type 2 [TaxId: 11709] [82443] (1)
      1. 1mu2
        complexed with gol, so4; mutant
        
        region a:430-555 [79469]
  4. BH0863-like Ribonuclease H [142490]
    new class of RNase H
    1. Bacillus halodurans [TaxId: 86665] [142491] (15)
      SQ Q9KEI9 61-193! SQ Q9KEI9 62-193
      BH0863
      1. 1zbf
        complexed with so4; mutant
        
        region a:62-193 [124850]
      2. 2g8k
        automatically matched to 1ZBL A:62-193
        complexed with ca; mutant
        
        region a:62-193 [134774]
      3. 2g8i
        automatically matched to 1ZBL A:62-193
        complexed with cl, mn, mpd; mutant
        
        region a:62-193 [134772]
      4. 2g8f
        complexed with cl, mg; mutant
        
        region a:61-193 [134770]
      5. 2r7y
        automatically matched to d1zbfa1
        complexed with mg, po4, sdg; mutant
        
        region a:62-193 [151657]
      6. 2g8v
        automatically matched to 2G8F A:61-193
        complexed with eoh, mg; mutant
        
        region a:61-193 [134787]
      7. 2g8h
        automatically matched to 1ZBL A:62-193
        complexed with mg, vo4; mutant
        
        region a:62-193 [134771]
      8. 3d0p
        automatically matched to d1zbfa1
        complexed with na; mutant
        
        region a:62-193 [157172]
      9. 3d0p
        automatically matched to d1zbfa1
        complexed with na; mutant
        
        region c:62-193 [157173]
      10. 1zbi
        automatically matched to 1ZBF A:62-193
        complexed with mg; mutant
        
        region a:62-193 [124853]
      11. 1zbi
        automatically matched to 1ZBF A:62-193
        complexed with mg; mutant
        
        region b:62-193 [124854]
      12. 2g8w
        automatically matched to 2G8F A:61-193
        complexed with ca; mutant
        
        region a:61-193 [134788]
      13. 1zbl
        complexed with mg; mutant
        
        region a:62-193 [124856]
      14. 1zbl
        automatically matched to 1ZBL A:62-193
        complexed with mg; mutant
        
        region b:62-193 [124857]
      15. 2g8u
        automatically matched to 1ZBF A:62-193
        complexed with mg; mutant
        
        region a:62-193 [134786]
2. Retroviral integrase, catalytic domain [53107] (3)
  1. Retroviral integrase, catalytic domain [53108]
    1. Rous sarcoma virus RSV [TaxId: 11886] [53109] (21)
      1. 1cxq
        complexed with epe, gol; mutant
        
        chain a [33621]
      2. 1czb
        complexed with epe; mutant
        
        chain a [33622]
      3. 1cz9
        complexed with cit, sul; mutant
        
        chain a [33623]
      4. 1cxu
        complexed with cit, gol; mutant
        
        chain a [33624]
      5. 1vsd
        complexed with epe, mg, ohe
        
        chain a [33625]
      6. 1asu
        complexed with epe; mutant
        
        chain a [33626]
      7. 1asw
        complexed with epe, ipa; mutant
        
        chain a [33627]
      8. 1a5x
        complexed with y3
        
        chain a [33630]
      9. 1a5v
        complexed with mn, y3
        
        chain a [33629]
      10. 1vsf
        complexed with epe, mn
        
        chain a [33628]
      11. 1a5w
        complexed with y3
        
        chain a [33632]
      12. 1vse
        complexed with epe
        
        chain a [33631]
      13. 1vsh
        complexed with epe, ocy, zn
        
        chain a [33633]
      14. 1vsm
        
        chain a [33635]
      15. 1asv
        complexed with ohe; mutant
        
        chain a [33634]
      16. 1vsj
        complexed with cd, epe, ocy
        
        chain a [33636]
      17. 1vsi
        complexed with ca, epe, ocy
        
        chain a [33638]
      18. 1vsl
        complexed with zn2; mutant
        
        chain a [33637]
      19. 1vsk
        mutant
        
        chain a [33639]
      20. 1c0m
        mutant
        
        region a:49-216 [33640]
        region b:54-216 [33641]
        region c:49-216 [33642]
        region d:54-216 [33643]
      21. 1c1a
        mutant
        
        region a:52-216 [33644]
        region b:55-216 [33645]
    2. Human immunodeficiency virus type 1 [TaxId: 11676] [53110] (19)
      1. 1exq
        complexed with cd, cl, so4; mutant
        
        chain a [33646]
        chain b [33647]
      2. 1hyv
        complexed with caf, cl, so4, tta; mutant
        
        chain a [61424]
      3. 1b9d
        complexed with cac, so4; mutant
        
        chain a [33649]
      4. 1b9f
        complexed with cac, so4; mutant
        
        chain a [33648]
      5. 2b4j
        automatically matched to d1biza_
        complexed with gol, po4; mutant
        
        region a:57-208 [127833]
      6. 2b4j
        automatically matched to d1biza_
        complexed with gol, po4; mutant
        
        region b:57-208 [127834]
      7. 1b92
        complexed with cac, so4; mutant
        
        chain a [33654]
      8. 1bis
        mutant
        
        chain a [33650]
        chain b [33651]
      9. 1biz
        complexed with cac; mutant
        
        chain a [33652]
        chain b [33653]
      10. 1bl3
        complexed with mg; mutant
        
        chain a [33655]
        chain b [33656]
        chain c [33657]
      11. 1qs4
        
        chain a [33658]
        chain b [33659]
        chain c [33660]
      12. 1itg
        complexed with cac; mutant
        
        chain a [33661]
      13. 1biu
        complexed with mg; mutant
        
        chain a [33663]
        chain b [33664]
        chain c [33665]
      14. 1hyz
        complexed with caf, cl, so4, tto; mutant
        
        chain a [61426]
      15. 1k6y
        complexed with k, po4, zn; mutant
        
        region a:56-210 [68240]
        region b:56-212 [68242]
        region c:56-209 [68244]
        region d:56-211 [68246]
      16. 1bhl
        complexed with cas; mutant
        
        chain a [33662]
      17. 1bi4
        mutant
        
        chain a [33666]
        chain b [33667]
        chain c [33668]
      18. 1ex4
        complexed with cps; mutant
        
        region a:56-222 [33670]
        region b:55-222 [33671]
      19. 2itg
        mutant
        
        chain a [33669]
    3. Simian immunodeficiency virus [TaxId: 11723] [53111] (1)
      1. 1c6v
        mutant
        
        chain a [33672]
        chain b [33673]
        chain c [33674]
        chain d [33675]
3. mu transposase, core domain [53112] (1)
  1. mu transposase, core domain [53113]
    1. Bacteriophage mu [TaxId: 10677] [53114] (2)
      1. 1bco
        
        region a:258-480 [33676]
      2. 1bcm
        
        region a:257-480 [33677]
        region b:258-480 [33678]
4. Transposase inhibitor (Tn5 transposase) [53115] (1)
  1. Transposase inhibitor (Tn5 transposase) [53116]
    contains additional all-alpha subdomains in both N- and C-terminal regions
    1. Escherichia coli [TaxId: 562] [53117] (6)
      1. 1mus
        complexed with resolved outside end DNA
        complexed with egl, mg, mn; mutant
        
        chain a [79494]
      2. 3ecp
        automatically matched to d1muha_
        complexed with gol; mutant
        
        region a:5-477 [158116]
      3. 1muh
        complexed with transposon end DNA
        complexed with mg, mn; mutant
        
        chain a [79485]
      4. 1mur
        20mer outside end 2 mn complex
        complexed with mn; mutant
        
        chain a [79493]
      5. 1mm8
        complexed with Me DNA
        complexed with mn; mutant
        
        chain a [79301]
      6. 1b7e
        complexed with tpt
        
        chain a [33680]
5. DnaQ-like 3'-5' exonuclease [53118] (26)
  contains Pfam 00929
  1. Exonuclease domain of prokaryotic DNA polymerase [53119]
    part of Klenow fragment, KF
    1. Escherichia coli [TaxId: 562] [53120] (14)
      1. 2kfz
        protein/DNA complex; complexed with mg, s, zn
        
        region a:324-518 [33683]
      2. 2kfn
        protein/DNA complex; complexed with mg, mn, s, zn
        
        region a:324-518 [33682]
      3. 1kfs
        protein/DNA complex; complexed with mg, zn; mutant
        
        region a:324-518 [33681]
      4. 1d8y
        
        region a:324-518 [33684]
      5. 1d9d
        
        region a:324-518 [33688]
      6. 1krp
        protein/DNA complex; complexed with pst, zn; mutant
        
        region a:324-518 [33685]
      7. 1ksp
        protein/DNA complex; complexed with pst, zn; mutant
        
        region a:324-518 [33687]
      8. 1qsl
        complexed with eu; mutant
        
        region a:324-518 [33686]
      9. 2kzz
        protein/DNA complex; complexed with zn
        
        region a:324-518 [33689]
      10. 2kzm
        protein/DNA complex; complexed with mn, zn
        
        region a:324-518 [33690]
      11. 1d9f
        
        region a:324-518 [33691]
      12. 1dpi
        complexed with zn
        
        region a:326-518 [33692]
      13. 1kln
        protein/DNA complex; complexed with zn; mutant
        
        region a:324-518 [33693]
      14. 1kfd
        complexed with ctp
        
        region a:324-518 [33694]
    2. Thermus aquaticus [TaxId: 271] [53121] (13)
      1. 1qtm
        protein/DNA complex; complexed with 2dt, mg, ttp
        
        region a:293-422 [33695]
      2. 1qsy
        protein/DNA complex; complexed with 2da, dad, mg; mutant
        
        region a:293-422 [33700]
      3. 1cmw
        
        region a:290-422 [33701]
      4. 1qss
        protein/DNA complex; complexed with ddg, dg3, mg; mutant
        
        region a:293-422 [33697]
      5. 1jxe
        
        region a:293-422 [33705]
      6. 3ktq
        complexed with ctp, ddc, mg
        
        region a:293-422 [33696]
      7. 1bgx
        
        region t:290-422 [33699]
      8. 1taq
        complexed with bgl, zn; mutant
        
        region a:290-422 [33698]
      9. 2ktq
        complexed with ctp, ddc, mg
        
        region a:295-422 [33702]
      10. 5ktq
        complexed with ctp
        
        region a:290-422 [33704]
      11. 1ktq
        
        region a:290-422 [33703]
      12. 4ktq
        complexed with ddc
        
        region a:294-422 [33706]
      13. 1tau
        protein/DNA complex; complexed with bgl, zn
        
        region a:290-422 [33707]
    3. Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] [53122] (45)
      SQ Q45458 298-876 # 88% sequence identity ! SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
      1. 2hhv
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        
        region a:298-468 [136514]
      2. 1u4b
        complexed with 8og, mg, so4, suc
        
        region a:299-468 [107664]
      3. 1nk4
        complexed with mg, so4, suc
        
        region a:297-468 [91923]
      4. 1njx
        complexed with mg, so4, suc
        
        region a:297-468 [91915]
      5. 1l3s
        complexed with mg, so4, suc
        
        region a:297-468 [84521]
      6. 1nk0
        complexed with mes, so4, suc
        
        region a:297-468 [91921]
      7. 1l3t
        complexed with mg, so4, suc
        
        region a:297-468 [84523]
      8. 1l3v
        complexed with mg, so4, suc
        
        region a:297-468 [84527]
      9. 1nkc
        complexed with mg, so4, suc
        
        region a:297-468 [91937]
      10. 2hhu
        automatically matched to d1l3sa1
        complexed with 6og, dcp, mg, so4, suc
        
        region a:298-468 [136512]
      11. 1l3u
        complexed with mg, so4, suc
        
        region a:297-468 [84525]
      12. 2hhq
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        
        region a:298-468 [136506]
      13. 1nke
        complexed with dcp, mg, so4, suc
        
        region a:297-468 [91939]
      14. 2hhw
        automatically matched to d1l3sa1
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
        
        region a:297-468 [136516]
      15. 2hhs
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        
        region a:298-468 [136508]
      16. 2hhw
        automatically matched to d1l3sa1
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
        
        region d:297-468 [136518]
      17. 1nk8
        complexed with mg, so4, suc
        
        region a:297-468 [91931]
      18. 1nk7
        complexed with mg, so4, suc
        
        region a:297-468 [91929]
      19. 1nk9
        complexed with mg, so4, suc
        
        region a:297-468 [91933]
      20. 1l5u
        complexed with mg, so4, suc
        
        region a:297-468 [84529]
      21. 1njw
        complexed with mg, so4, suc
        
        region a:297-468 [91913]
      22. 2hw3
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        
        region a:298-468 [136819]
      23. 2hvi
        automatically matched to d1l3sa1
        complexed with dct, ddg, mg, so4, suc
        
        region a:298-468 [136808]
      24. 2hvi
        automatically matched to d1l3sa1
        complexed with dct, ddg, mg, so4, suc
        
        region d:298-468 [136810]
      25. 1u45
        complexed with 8og, mg, so4, suc
        
        region a:299-468 [107654]
      26. 1xc9
        complexed with bp, mg, so4, suc
        
        region a:297-468 [115111]
      27. 2hht
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        
        region a:298-468 [136510]
      28. 1njz
        complexed with mg, so4, suc
        
        region a:297-468 [91919]
      29. 1u47
        complexed with 8og, mg, so4, suc
        
        region a:299-468 [107658]
      30. 1njy
        complexed with mg, so4, suc, ttp
        
        region a:297-468 [91917]
      31. 1nkb
        complexed with mg, so4, suc
        
        region a:297-468 [91935]
      32. 1ua1
        complexed with af, so4
        
        region a:297-468 [107755]
      33. 1nk5
        complexed with mg, so4, suc
        
        region a:297-468 [91925]
      34. 1u48
        complexed with 8og, mg, so4, suc
        
        region a:299-468 [107660]
      35. 1u49
        complexed with 8og, mg, so4, suc
        
        region a:299-468 [107662]
      36. 1nk6
        complexed with so4, suc
        
        region a:297-468 [91927]
      37. 1xwl
        complexed with so4
        
        region a:297-468 [33708]
      38. 2bdp
        protein/DNA complex; complexed with mg, so4
        
        region a:297-468 [33709]
      39. 1ua0
        complexed with af, so4, suc
        
        region a:297-468 [107753]
      40. 4bdp
        protein/DNA complex; complexed with mg, so4
        
        region a:297-468 [33710]
      41. 2hhx
        automatically matched to d1l3sa1
        complexed with 6og, so4, suc
        
        region a:298-468 [136520]
      42. 1lv5
        complexed with dcp, mg, mn, so4; mutant
        
        region a:297-468 [84719]
        region b:297-468 [84721]
      43. 2hvh
        automatically matched to d1l3sa1
        complexed with 6og, dct, ddg, mn, so4, suc
        
        region a:298-468 [136804]
      44. 2hvh
        automatically matched to d1l3sa1
        complexed with 6og, dct, ddg, mn, so4, suc
        
        region d:298-468 [136806]
      45. 3bdp
        protein/DNA complex; complexed with 2dt, so4
        
        region a:297-468 [33711]
  2. Exonuclease domain of T7 DNA polymerase [53123]
    1. Bacteriophage T7 [TaxId: 10760] [53124] (16)
      SQ P00581
      1. 1x9m
        complexed with 2dt, 8fg, mg; mutant
        
        region a:1-210 [114999]
      2. 1tk5
        complexed with 1pe, ddg, mes, mg, so4
        
        region a:1-210 [107074]
      3. 1t7p
        protein/DNA complex; complexed with 2da, dg3, mg; mutant
        
        region a:1-210 [33712]
      4. 1x9w
        complexed with 2dt, mg; mutant
        
        region a:1-210 [115008]
      5. 1sl2
        complexed with 2da, dad, mg, ttd; mutant
        
        region a:1-210 [105706]
      6. 1tkd
        complexed with 1pe, 8og, d3t, doc, mes, mg, so4
        
        region a:1-210 [107086]
      7. 1skr
        complexed with 2da, dad, mg; mutant
        
        region a:1-210 [105684]
      8. 1sl1
        complexed with 2da, mg, ttd; mutant
        
        region a:1-210 [105703]
      9. 1tk0
        complexed with 1pe, 8og, dct, ddg, mes, mg, so4; mutant
        
        region a:1-210 [107063]
      10. 1tk8
        complexed with 1pe, 2da, 8og, d3t, mes, mg, so4
        
        region a:1-210 [107079]
      11. 1sks
        complexed with 2dt, mg, ttd; mutant
        
        region a:1-210 [105687]
      12. 1skw
        complexed with 2dt, mg; mutant
        
        region a:1-210 [105694]
      13. 1t8e
        complexed with 2dt, dct, mes, mg, pg4, so4
        
        region a:1-210 [112316]
      14. 1x9s
        complexed with 2dt, mg; mutant
        
        region a:1-210 [115005]
      15. 1zyq
        automatically matched to d1skra1
        complexed with 8og, dad, ddg, mg; mutant
        
        region a:1-210 [125846]
      16. 1sl0
        complexed with 2dt, dad, mg; mutant
        
        region a:1-210 [105697]
        region c:1-210 [105700]
  3. Exonuclease domain of family B DNA polymerases [53125]
    elaborated with additional structures and the N-terminal subdomain
    1. Escherichia coli [TaxId: 562] [102482] (1)
      DNA polymerase II, additional N-terminal subdomain has an OB-fold with a ferredoxin-like fold insertion
      1. 1q8i
        mutant
        
        region a:2-389 [96208]
    2. Bacteriophage T4 [TaxId: 10665] [53126] (2)
      additional N-terminal subdomain contains rudimental OB-fold
      1. 1noy
        exonuclease domain only
        protein/DNA complex; complexed with mn, zn
        
        chain a [33713]
        chain b [33714]
      2. 1noz
        exonuclease domain only
        
        chain a [33715]
        chain b [33716]
    3. Bacteriophage RB69 [TaxId: 12353] [53127] (27)
      additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
      1. 1ih7
        complexed with gmp, k
        
        region a:1-375 [62375]
      2. 3cq8
        automatically matched to d1clqa1
        complexed with ca, gol, na, ttp; mutant
        
        region a:1-375 [156927]
      3. 1ig9
        complexed with ca, doc, ttp; mutant
        
        region a:1-375 [62367]
      4. 2dy4
        automatically matched to d1clqa1
        complexed with ctg; mutant
        
        region a:1-375 [131882]
      5. 2dy4
        automatically matched to d1clqa1
        complexed with ctg; mutant
        
        region b:1-375 [131884]
      6. 2dy4
        automatically matched to d1clqa1
        complexed with ctg; mutant
        
        region c:1-375 [131886]
      7. 2dy4
        automatically matched to d1clqa1
        complexed with ctg; mutant
        
        region d:1-375 [131888]
      8. 2ozm
        automatically matched to d1clqa1
        complexed with 3dr, ddg, mg, n5p; mutant
        
        region a:1-375 [149115]
      9. 1clq
        
        region a:1-375 [33717]
      10. 2ozs
        automatically matched to d1clqa1
        complexed with ddg, dtp, mg; mutant
        
        region a:1-375 [149127]
      11. 2p5g
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region a:1-375 [149240]
      12. 2p5g
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region b:1-375 [149242]
      13. 2p5g
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region c:1-375 [149244]
      14. 2p5g
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region d:2-375 [149246]
      15. 1q9y
        complexed with 8og, ca, dcp, doc; mutant
        
        region a:1-375 [96336]
      16. 1q9x
        complexed with 3dr, ca, dgp, doc; mutant
        
        region a:1-375 [96328]
        region b:1-375 [96330]
        region c:1-375 [96332]
        region d:1-375 [96334]
      17. 2p5o
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region a:1-375 [139498]
      18. 2p5o
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region b:1-375 [139500]
      19. 2p5o
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region c:1-375 [139502]
      20. 2p5o
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        
        region d:1-375 [139504]
      21. 2oyq
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        
        region a:1-375 [149070]
      22. 2oyq
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        
        region b:1-375 [149072]
      23. 2oyq
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        
        region c:1-375 [149074]
      24. 2oyq
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        
        region d:2-375 [149076]
      25. 1waj
        complexed with 5gp
        
        region a:1-375 [33718]
      26. 1waf
        complexed with gmp
        
        region a:1-375 [33719]
        region b:1-375 [33720]
      27. 2atq
        automatically matched to d1clqa1
        complexed with gdp, zn; mutant
        
        region a:1-375 [127303]
    4. Archaeon Thermococcus gorgonarius [TaxId: 71997] [53128] (3)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1tgo
        
        region a:1-347 [33721]
      2. 2vwk
        automatically matched to d1tgoa1
        complexed with na, so4; mutant
        
        region a:1-347 [153677]
      3. 2vwj
        automatically matched to d1qqca1
        complexed with k; mutant
        
        region a:1-347 [153675]
    5. Archaeon Thermococcus sp., 9on-7 [TaxId: 35749] [53129] (1)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1qht
        mutant
        
        region a:1-347 [33722]
    6. Archaeon Desulfurococcus tok [TaxId: 108142] [53130] (2)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1d5a
        complexed with mg, so4
        
        region a:1-347 [33723]
      2. 1qqc
        complexed with mg, so4
        
        region a:1-347 [33724]
    7. Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [53131] (2)
      SQ P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1wn7
        complexed with gol, ni; mutant
        
        region a:1-347 [121088]
      2. 1wns
        
        region a:1-347 [109437]
    8. Sulfolobus solfataricus [TaxId: 2287] [117647] (1)
      SQ P26811 40-864
      1. 1s5j
        complexed with mg, sul
        
        region a:40-449 [112040]
  4. N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III [82444]
    1. Escherichia coli [TaxId: 562] [82445] (5)
      1. 2gui
        automatically matched to d1j53a_
        complexed with egl, mn, peg, u5p
        
        region a:7-180 [135737]
      2. 1j54
        complexed with egl, mn, tmp
        
        chain a [77077]
      3. 1j53
        complexed with egl, mn, tmp
        
        chain a [77076]
      4. 2ido
        automatically matched to d1j53a_
        complexed with edo, mn, tmp
        
        region a:7-180 [137284]
      5. 2ido
        automatically matched to d1j53a_
        complexed with edo, mn, tmp
        
        region c:7-180 [137286]
  5. Exonuclease I [53132]
    also includes an alpha+beta domain with SH3-like like motif and non-globular C-terminal all-alpha region
    1. Escherichia coli [TaxId: 562] [53133] (1)
      1. 1fxx
        complexed with gol, mg, po4
        
        chain a [33726]
    2. Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333] [159630] (3)
      1. 2qxf
        automatically matched to d1fxxa_
        complexed with mg, na, tmp
        
        region a:8-474 [151455]
      2. 3c95
        automatically matched to d1fxxa_
        complexed with mg
        
        region a:8-474 [156121]
      3. 3c94
        automatically matched to d1fxxa_
        complexed with mg
        
        region a:8-474 [156120]
  6. Oligoribonuclease [89719]
    1. Haemophilus influenzae [TaxId: 727] [89720] (1)
      HI1715
      1. 1j9a
        CASP4
        structural genomics
        complexed with mse, so4
        
        chain a [84135]
    2. Escherichia coli [TaxId: 562] [142492] (6)
      SQ P0A784 1-180
      1. 2igi
        automatically matched to d1ytaa1
        complexed with acy, cd, zn
        
        region a:1-180 [147657]
      2. 2igi
        automatically matched to d1ytaa1
        complexed with acy, cd, zn
        
        region b:2-180 [147658]
      3. 1yta
        complexed with flc
        
        region a:1-180 [124002]
      4. 1yta
        automatically matched to 1YTA A:1-180
        complexed with flc
        
        region b:1-180 [124003]
      5. 1yta
        automatically matched to 1YTA A:1-180
        complexed with flc
        
        region c:1-180 [124004]
      6. 1yta
        automatically matched to 1YTA A:1-180
        complexed with flc
        
        region d:1-180 [124005]
  7. Hypothetical protein AT5G06450 [102483]
    forms a ring-shaped hexamer; function unknown
    1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [102484] (7)
      1. 1vk0
        structural genomics
        
        chain a [100839]
        chain b [100840]
        chain c [100841]
        chain d [100842]
        chain e [100843]
        chain f [100844]
      2. 2q3s
        automatically matched to d1vk0a_
        
        region a:1-206 [139802]
      3. 2q3s
        automatically matched to d1vk0a_
        
        region b:1-206 [139803]
      4. 2q3s
        automatically matched to d1vk0a_
        
        region c:1-206 [139804]
      5. 2q3s
        automatically matched to d1vk0a_
        
        region d:1-206 [139805]
      6. 2q3s
        automatically matched to d1vk0a_
        
        region e:1-206 [139806]
      7. 2q3s
        automatically matched to d1vk0a_
        
        region f:1-206 [139807]
  8. Exonuclease ERI1 [117648]
    1. Human (Homo sapiens) [TaxId: 9606] [117649] (1)
      SQ Q8IV48 122-321
      1. 1w0h
        complexed with amp, mg
        
        chain a [114064]
  9. Exonuclease domain of phi29 DNA polymerase [117650]
    1. Bacteriophage phi-29 [TaxId: 10756] [117651] (18)
      SQ P03680
      1. 2py5
        automatically matched to d1xhxa1
        complexed with edo; mutant
        
        region a:5-187 [149928]
      2. 2py5
        automatically matched to d1xhxa1
        complexed with edo; mutant
        
        region b:5-187 [149930]
      3. 2pyj
        automatically matched to d1xhxa1
        complexed with dgt, doc, edo, mg, mn; mutant
        
        region a:5-187 [149943]
      4. 2pyj
        automatically matched to d1xhxa1
        complexed with dgt, doc, edo, mg, mn; mutant
        
        region b:5-187 [149945]
      5. 2pyl
        automatically matched to d1xhxa1
        complexed with 2da, edo, mg, ttp; mutant
        
        region a:5-187 [149947]
      6. 1xhx
        complexed with mg, so4; mutant
        
        region a:5-187 [115305]
      7. 1xi1
        complexed with mg; mutant
        
        region a:5-187 [115309]
      8. 1xhz
        mutant
        
        region a:5-187 [115307]
      9. 2pzs
        automatically matched to d1xhxa1
        mutant
        
        region a:5-187 [149965]
      10. 2pzs
        automatically matched to d1xhxa1
        mutant
        
        region b:5-187 [149967]
      11. 2pzs
        automatically matched to d1xhxa1
        mutant
        
        region c:5-187 [149969]
      12. 2pzs
        automatically matched to d1xhxa1
        mutant
        
        region d:5-187 [149971]
      13. 2ex3
        complexed with pb; mutant
        
        region a:6-187 [132498]
      14. 2ex3
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        
        region c:6-187 [132501]
      15. 2ex3
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        
        region e:6-187 [132504]
      16. 2ex3
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        
        region g:6-187 [132507]
      17. 2ex3
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        
        region i:6-187 [132510]
      18. 2ex3
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        
        region k:6-187 [132513]
  10. Interferon-stimulated gene 20 kDa protein, ISG20 [117652]
    1. Human (Homo sapiens) [TaxId: 9606] [117653] (1)
      SQ Q96AZ6 6-178
      1. 1wlj
        complexed with act, mn, u5p
        
        chain a [114734]
  11. Exosome complex exonuclease RRP6 [142493]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142494] (4)
      SQ Q12149 129-420
      1. 2hbk
        automatically matched to 2HBJ A:129-420
        complexed with mn; mutant
        
        region a:129-420 [136314]
      2. 2hbj
        mutant
        
        region a:129-420 [136312]
      3. 2hbl
        automatically matched to 2HBJ A:129-420
        complexed with amp, mn, zn; mutant
        
        region a:129-420 [136316]
      4. 2hbm
        automatically matched to 2HBJ A:129-420
        complexed with mn, u, zn; mutant
        
        region a:129-420 [136318]
  12. Ribonuclease D, catalytic domain [142495]
    1. Escherichia coli [TaxId: 562] [142496] (1)
      SQ P09155 1-193
      1. 1yt3
        complexed with so4, zn
        
        region a:1-193 [123994]
  13. Ribonuclease T [142497]
    1. Pseudomonas aeruginosa [TaxId: 287] [142498] (2)
      SQ Q9HY82 19-220
      1. 2f96
        complexed with mg
        
        region a:19-220 [133153]
      2. 2f96
        automatically matched to 2F96 A:19-220
        complexed with mg
        
        region b:19-220 [133154]
  14. Three prime repair exonuclease 2, TREX2 [142499]
    1. Human (Homo sapiens) [TaxId: 9606] [142500] (2)
      SQ Q9BQ50 44-271
      1. 1y97
        
        region a:1-228 [122773]
      2. 1y97
        automatically matched to 1Y97 A:1-228
        
        region b:3-228 [122774]
  15. Three prime repair exonuclease 1, TREX1 [159631]
    1. Mouse (Mus musculus) [TaxId: 10090] [159632] (18)
      SQ Q91XB0 5-234! SQ Q91XB0 9-234
      1. 3b6o
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        
        region a:9-234 [154901]
      2. 3b6o
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        
        region b:9-234 [154902]
      3. 3b6o
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        
        region c:9-234 [154903]
      4. 3b6o
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        
        region d:9-234 [154904]
      5. 2o4g
        complexed with mg, tmp
        
        region a:9-234 [148584]
      6. 2o4g
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        
        region b:9-234 [148585]
      7. 2o4g
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        
        region c:9-234 [148586]
      8. 2o4g
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        
        region d:9-234 [148587]
      9. 2ioc
        complexed with d5m, mn
        
        region a:5-234 [147742]
      10. 2ioc
        automatically matched to 2IOC A:5-234
        complexed with d5m, mn
        
        region b:8-234 [147743]
      11. 2oa8
        automatically matched to 2IOC A:5-234
        complexed with ca
        
        region a:5-234 [148693]
      12. 2oa8
        automatically matched to 2IOC A:5-234
        complexed with ca
        
        region b:5-234 [148694]
      13. 3b6p
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        
        region a:9-234 [154905]
      14. 3b6p
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        
        region b:9-234 [154906]
      15. 3b6p
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        
        region c:9-234 [154907]
      16. 3b6p
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        
        region d:9-234 [154908]
      17. 2o4i
        mutant
        
        region a:9-234 [148588]
      18. 2o4i
        automatically matched to 2O4I A:9-234
        mutant
        
        region b:9-234 [148589]
6. RuvC resolvase [53134] (1)
  1. RuvC resolvase [53135]
    Holliday junction-specific endonuclease
    1. Escherichia coli [TaxId: 562] [53136] (1)
      1. 1hjr
        
        chain a [33727]
        chain b [33728]
        chain c [33729]
        chain d [33730]
7. Mitochondrial resolvase ydc2 catalytic domain [69533] (1)
  1. Mitochondrial resolvase ydc2 catalytic domain [69534]
    1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [69535] (1)
      1. 1kcf
        complexed with so4
        
        region a:39-256 [68435]
        region b:39-256 [68437]
8. Putative Holliday junction resolvase RuvX [102485] (3)
  1. Hypothetical protein YqgF (RuvX) [102486]
    1. Escherichia coli [TaxId: 562] [102487] (3)
      1. 1nu0
        structural genomics
        complexed with so4; mutant
        
        chain a [92165]
        chain b [92166]
      2. 1nmn
        structural genomics
        
        chain a [91978]
        chain b [91979]
      3. 1ovq
        structural genomics
        
        chain a [93607]
  2. Hypothetical protein YrrK (RuvX) [102488]
    1. Bacillus subtilis [TaxId: 1423] [102489] (1)
      1. 1vhx
        structural genomics
        
        chain a [100712]
        chain b [100713]
  3. Hypothetical protein, YqgF homologue [102490]
    1. Thermus thermophilus [TaxId: 274] [102491] (1)
      1. 1iv0
        N-terminal fragment lacking the C-terminal helix
        
        chain a [90706]
9. CAF1-like ribonuclease [102492] (2)
  1. Pop2 RNase D domain [102493]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102494] (1)
      1. 1uoc
        complexed with ca, xe
        
        chain a [99686]
        chain b [99687]
  2. CCR4-NOT transcription complex subunit 7, CAF1 [159633]
    1. Human (Homo sapiens) [TaxId: 9606] [159634] (1)
      SQ Q9UIV1 11-262
      1. 2d5r
        
        region a:11-262 [146466]
10. PIWI domain [110640] (3)
  Pfam 02171
  1. Argonaute homologue PF0537 [110641]
    includes the middle domain
    1. Pyrococcus furiosus [TaxId: 2261] [110642] (3)
      SQ Q8U3D2
      1. 1u04
        mutant
        
        region a:324-770 [107540]
      2. 1z26
        automatically matched to d1u04a2
        complexed with wo4; mutant
        
        region a:324-770 [124373]
      3. 1z25
        automatically matched to d1u04a2
        complexed with mn; mutant
        
        region a:324-770 [124371]
  2. Argonaute homologue Aq_1447 [142501]
    includes the middle domain
    1. Aquifex aeolicus [TaxId: 63363] [142502] (6)
      SQ O67434 315-706
      1. 1yvu
        complexed with ca
        
        region a:315-706 [124121]
      2. 2f8s
        automatically matched to 1YVU A:315-706
        
        region a:315-706 [133141]
      3. 2f8s
        automatically matched to 1YVU A:315-706
        
        region b:315-706 [133143]
      4. 2f8t
        automatically matched to 1YVU A:315-706
        
        region a:315-706 [133145]
      5. 2f8t
        automatically matched to 1YVU A:315-706
        
        region b:315-706 [133147]
      6. 2nub
        automatically matched to 1YVU A:315-706
        
        region a:315-706 [138605]
  3. Hypothetical protein AF1318 [142503]
    1. Archaeoglobus fulgidus [TaxId: 2234] [142504] (5)
      SQ O28951 11-427
      1. 1w9h
        complexed with cd, cl, ni
        
        region a:93-408 [120785]
      2. 2bgg
        automatically matched to 1W9H A:93-408
        complexed with mn
        
        region a:93-408 [128478]
      3. 2bgg
        automatically matched to 1W9H A:93-408
        complexed with mn
        
        region b:93-408 [128479]
      4. 1ytu
        automatically matched to 1W9H A:93-408
        complexed with mg
        
        region a:93-408 [124014]
      5. 1ytu
        automatically matched to 1W9H A:93-408
        complexed with mg
        
        region b:93-408 [124015]
11. TM1739-like [142505] (1)
  Pfam 04251; DUF430; particular similarity to the PIWI domain family
  1. Hypothetical protein TM1739 [142506]
    1. Thermotoga maritima [TaxId: 2336] [142507] (2)
      SQ Q9X261 1-301
      1. 1zup
        
        region a:1-301 [125681]
      2. 1zup
        automatically matched to 1ZUP A:1-301
        
        region b:4-301 [125682]
12. Hermes transposase-like [142508] (1)
  1. Transposase Hermes, catalytic domain [142509]
    1. House fly (Musca domestica) [TaxId: 7370] [142510] (1)
      SQ Q25442 163-609
      1. 2bw3
        mutant
        
        region a:163-609 [129318]
13. Tex RuvX-like domain-like [159635] (1)
  1. Transcriptional accessory factor Tex [159636]
    1. Pseudomonas aeruginosa [TaxId: 287] [159637] (3)
      SQ Q9HTY8 325-473
      1. 3bzk
        automatically matched to 3BZC A:325-473
        
        region a:325-473 [155781]
      2. 3bzc
        
        region a:325-473 [155756]
      3. 2oce
        
        region a:325-473 [148731]
14. Prp8 beta-finger domain-like [159638] (2)
  1. Pre-mRNA-splicing factor 8, Prp8 [159639]
    1. Human (Homo sapiens) [TaxId: 9606] [159640] (3)
      SQ Q6P2Q9 1760-2016! SQ Q6P2Q9 1771-1989
      1. 3enb
        
        region a:1771-1989 [158189]
      2. 3enb
        automatically matched to 3ENB A:1771-1989
        
        region b:1774-1988 [158190]
      3. 3e9l
        complexed with cl, na
        
        region a:1760-2016 [158068]
    2. Saccharomyces cerevisiae [TaxId: 4932] [159641] (5)
      SQ P33334 1833-2087! SQ P33334 1835-2087
      1. 3e9o
        
        region a:1835-2087 [158069]
      2. 3e66
        
        region a:1833-2087 [158032]
      3. 3e66
        automatically matched to 3E66 A:1833-2087
        
        region b:1833-2087 [158033]
      4. 3e9p
        automatically matched to 3E66 A:1833-2087
        
        region a:1833-2087 [158070]
      5. 3e9p
        automatically matched to 3E66 A:1833-2087
        
        region b:1833-2087 [158071]
Translational machinery components [53137] (2)
uperfamily
1. Ribosomal protein L18 and S11 [53138] (7)
  1. Ribosomal protein L18 (L18p) [53139]
    1. Archaeon Haloarcula marismortui [TaxId: 2238] [53140] (40)
      SQ P14123
      1. 1vqo
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3
        
        region n:1-186 [120375]
      2. 1vq8
        automatically matched to d1ffkk_
        complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
        
        region n:1-186 [120201]
      3. 1vqp
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, dcz, hfa, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
        
        region n:1-186 [120404]
      4. 1jj2
        complexed with cd, cl, k, mg, na
        
        chain m [63098]
      5. 1yhq
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3, zit; mutant
        
        region n:1-186 [123196]
      6. 1vql
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, tse, ur3
        
        region n:1-186 [120288]
      7. 1vqk
        automatically matched to d1ffkk_
        complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
        
        region n:1-186 [120259]
      8. 1s72
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
        
        chain n [105333]
      9. 1vqm
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
        
        region n:1-186 [120317]
      10. 1vqn
        automatically matched to d1ffkk_
        complexed with 1ma, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, ppu, psu, sr, ur3
        
        region n:1-186 [120346]
      11. 1yi2
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, ery, k, mg, na, omg, omu, psu, ur3; mutant
        
        region n:1-186 [123243]
      12. 1yij
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, tel, ur3; mutant
        
        region n:1-186 [123311]
      13. 1vq7
        automatically matched to d1ffkk_
        complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, pae, psu, ur3
        
        region n:1-186 [120172]
      14. 1vq4
        automatically matched to d1ffkk_
        complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, po2, psu, ur3
        
        region n:1-186 [120085]
      15. 2otl
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, gir, k, mg, na, omg, omu, psu, ur3
        
        region n:1-186 [139359]
      16. 1vq5
        automatically matched to d1ffkk_
        complexed with 1ma, 2op, 5aa, cd, cl, dcz, k, mg, na, omg, omu, po2, psu, ur3
        
        region n:1-186 [120114]
      17. 1vq9
        automatically matched to d1ffkk_
        complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
        
        region n:1-186 [120230]
      18. 1m90
        complexed with aca, cd, cl, k, mg, na, pha, sps
        
        chain o [78853]
      19. 1yit
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3, vir, vrs
        
        region n:1-186 [123354]
      20. 1vq6
        automatically matched to d1ffkk_
        complexed with 1ma, 5aa, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, psu, ur3
        
        region n:1-186 [120143]
      21. 2otj
        automatically matched to d1ffkk_
        complexed with 13t, 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
        
        region n:1-186 [139330]
      22. 1yjw
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, syb, ur3; mutant
        
        region n:1-186 [123478]
      23. 1nji
        complexed with cd, cl, clm, k, mg, na; mutant
        
        chain o [85806]
      24. 1kqs
        complexed with aca, btn, cd, cl, k, mg, na, pha, ppu
        
        chain m [68828]
      25. 1kc8
        complexed with bls, cd, cl, k, mg, na
        
        chain o [84370]
      26. 1yjn
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, cly, k, mg, na, omg, omu, psu, ur3; mutant
        
        region n:1-186 [123446]
      27. 1n8r
        complexed with cd, cl, k, mg, na, vir; mutant
        
        chain o [85442]
      28. 1k73
        complexed with anm, cd, cl, k, mg, na
        
        chain o [84331]
      29. 1yj9
        automatically matched to d1ffkk_
        complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3; mutant
        
        region n:1-186 [123407]
      30. 1qvg
        complexed with cd, cl, k, mg, na
        
        chain m [96405]
      31. 1q82
        complexed with cd, cl, k, mg, na, ppu
        
        chain o [96142]
      32. 1qvf
        complexed with cd, cl, k, mg, na
        
        chain m [96375]
      33. 1q81
        complexed with cd, cl, k, mg, na, ppu
        
        chain o [96112]
      34. 1k9m
        complexed with cd, cl, k, mg, na, tyk
        
        chain o [72226]
      35. 1kd1
        complexed with cd, cl, k, mg, na, spr
        
        chain o [72337]
      36. 1k8a
        complexed with cai, cd, cl, k, mg, na
        
        chain o [72159]
      37. 1m1k
        complexed with cd, cl, k, mg, na, zit
        
        chain o [74397]
      38. 1q86
        complexed with cd, cl, k, mg, na, pha
        
        chain o [96180]
      39. 1q7y
        complexed with cd, cl, k, mg, na, po4, puy
        
        chain o [96078]
      40. 1ffk
        complexed with cd, k, mo3; mutant
        
        chain k [33731]
    2. Thermus thermophilus [TaxId: 274] [75245] (7)
      1. 2j01
        automatically matched to d1ilya_
        
        region s:23-108 [145575]
      2. 2j03
        automatically matched to d1ilya_
        complexed with lys
        
        region s:23-108 [145602]
      3. 1ily
        
        chain a [71245]
      4. 2hgq
        automatically matched to d1ilya_
        
        region r:23-108 [145353]
      5. 1vsa
        automatically matched to d1ilya_
        
        region m:23-108 [144525]
      6. 2hgj
        automatically matched to d1ilya_
        
        region r:23-108 [145321]
      7. 2hgu
        automatically matched to d1ilya_
        
        region r:23-108 [145385]
    3. Bacillus stearothermophilus [TaxId: 1422] [102495] (1)
      1. 1ovy
        
        chain a [93624]
    4. Escherichia coli [TaxId: 562] [159642] (29)
      SQ P0C018 1-117
      1. 2gyc
        automatically matched to 2AW4 O:1-117
        
        region m:3-115 [145271]
      2. 2gya
        automatically matched to 2AW4 O:1-117
        
        region m:3-115 [145249]
      3. 2qam
        automatically matched to 2AW4 O:1-117
        complexed with mg, nmy, zn
        
        region o:2-117 [150255]
      4. 2qao
        automatically matched to 2AW4 O:1-117
        complexed with mg, nmy, zn
        
        region o:2-117 [150308]
      5. 2i2t
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [145455]
      6. 2i2v
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [145497]
      7. 2qbe
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [150475]
      8. 2qbg
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [150529]
      9. 2qoz
        automatically matched to 2AW4 O:1-117
        complexed with mg, nmy, zn
        
        region o:2-117 [151131]
      10. 2qp1
        automatically matched to 2AW4 O:1-117
        complexed with mg, nmy, zn
        
        region o:2-117 [151184]
      11. 3df2
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [157644]
      12. 3df4
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [157698]
      13. 2qba
        automatically matched to 2AW4 O:1-117
        complexed with lll, mg, zn
        
        region o:2-117 [150368]
      14. 2qbc
        automatically matched to 2AW4 O:1-117
        complexed with lll, mg, zn
        
        region o:2-117 [150421]
      15. 2qbi
        automatically matched to 2AW4 O:1-117
        complexed with lll, mg, zn
        
        region o:2-117 [150583]
      16. 2qbk
        automatically matched to 2AW4 O:1-117
        complexed with lll, mg, zn
        
        region o:2-117 [150637]
      17. 2qov
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [151025]
      18. 2qox
        automatically matched to 2AW4 O:1-117
        complexed with mg, zn
        
        region o:2-117 [151078]
      19. 1vs6
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [144470]
      20. 1vs8
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [144511]
      21. 2aw4
        Representative structure
        complexed with mg
        
        region o:1-117 [144879]
      22. 2awb
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [144920]
      23. 2z4l
        automatically matched to 2AW4 O:1-117
        complexed with mg, par, zn
        
        region o:2-117 [154093]
      24. 2z4n
        automatically matched to 2AW4 O:1-117
        complexed with mg, par, zn
        
        region o:2-117 [154147]
      25. 2vhm
        automatically matched to 2AW4 O:1-117
        complexed with mg; mutant
        
        region o:1-117 [153078]
      26. 2vhn
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [153110]
      27. 2rdo
        automatically matched to 2AW4 O:1-117
        
        region o:1-117 [151955]
      28. 2j28
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [145636]
      29. 3bbx
        automatically matched to 2AW4 O:1-117
        complexed with mg
        
        region o:1-117 [155112]
    5. Deinococcus radiodurans [TaxId: 1299] [159643] (6)
      SQ Q9RSL2 8-111
      1. 2zjr
        Representative structure
        complexed with mg
        
        region l:8-111 [154565]
      2. 1xbp
        automatically matched to 2ZJR L:8-111
        complexed with mul
        
        region m:8-111 [145878]
      3. 2zjq
        automatically matched to 2ZJR L:8-111
        
        region l:8-111 [154536]
      4. 3cf5
        automatically matched to 2ZJR L:8-111
        complexed with mg, txx
        
        region l:8-111 [156552]
      5. 2zjp
        automatically matched to 2ZJR L:8-111
        complexed with mg, nsh, zn
        
        region l:8-111 [154504]
      6. 3dll
        automatically matched to 2ZJR L:8-111
        complexed with mg, zld, zn
        
        region l:8-111 [157789]
  2. Ribosomal protein S11 [53141]
    1. Thermus thermophilus [TaxId: 274] [53142] (46)
      SQ P80376
      1. 2uub
        automatically matched to d1i94k_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region k:11-129 [139942]
      2. 2vqe
        automatically matched to d1i94k_
        complexed with k, mg, par, tm2, zn
        
        region k:11-126 [153435]
      3. 1fjg
        complexed with mg, par, scm, sry, zn
        
        chain k [33733]
      4. 2vqf
        automatically matched to d1i94k_
        complexed with k, mg, par, tm2, zn
        
        region k:11-126 [153454]
      5. 1j5e
        complexed with unx, zn
        
        chain k [71554]
      6. 2uxc
        automatically matched to d1i94k_
        complexed with k, mg, par, zn
        
        region k:11-129 [140014]
      7. 2uuc
        automatically matched to d1i94k_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region k:11-129 [139962]
      8. 2uua
        automatically matched to d1i94k_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region k:11-129 [139922]
      9. 1xmq
        complexed with mg, par, t6a, zn
        
        chain k [115540]
      10. 1n32
        complexed with mg, par, psu, zn
        
        chain k [79880]
      11. 2uu9
        automatically matched to d1i94k_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region k:11-129 [139902]
      12. 1xnq
        complexed with mg, par, zn
        
        chain k [115614]
      13. 1xnr
        complexed with mg, par, zn
        
        chain k [115636]
      14. 1hr0
        complexed with mg, zn
        
        chain k [33734]
      15. 1hnz
        complexed with hyg, mg, zn
        
        chain k [33735]
      16. 2j02
        automatically matched to d1i94k_
        complexed with 5mu, mg, par, zn
        
        region k:11-129 [137876]
      17. 2j00
        automatically matched to d1i94k_
        complexed with 5mu, mg, par, zn
        
        region k:11-129 [137849]
      18. 2uxd
        automatically matched to d1i94k_
        complexed with k, mg, par, zn
        
        region k:11-126 [152291]
      19. 1xmo
        complexed with mg, mnu, par, t6a, zn
        
        chain k [115510]
      20. 1hnw
        complexed with mg, tac, zn
        
        chain k [33736]
      21. 2e5l
        automatically matched to d1i94k_
        complexed with zn
        
        region k:11-125 [132035]
      22. 3d5a
        automatically matched to d1i94k_
        complexed with mg, zn
        
        region k:11-126 [157345]
      23. 3d5c
        automatically matched to d1i94k_
        complexed with mg, zn
        
        region k:11-126 [157375]
      24. 1i94
        complexed with mg, wo2, zn
        
        chain k [62002]
      25. 1hnx
        complexed with mg, pcy, zn
        
        chain k [33737]
      26. 1n33
        complexed with mg, par, psu, zn
        
        chain k [79902]
      27. 2hhh
        automatically matched to d1i94k_
        complexed with ksg
        
        region k:11-129 [136487]
      28. 1i96
        complexed with mg, wo2, zn
        
        chain k [62046]
      29. 2uxb
        automatically matched to d1i94k_
        complexed with k, mg, par, zn
        
        region k:11-126 [152272]
      30. 1n34
        complexed with zn
        
        chain k [79924]
      31. 2v46
        automatically matched to d1i94k_
        complexed with 5mu, mg, zn
        
        region k:11-126 [152493]
      32. 2v48
        automatically matched to d1i94k_
        complexed with 5mu, mg, zn
        
        region k:11-126 [152529]
      33. 1i97
        complexed with mg, tac, wo2, zn
        
        chain k [62069]
      34. 1n36
        complexed with zn
        
        chain k [79947]
      35. 1i95
        complexed with ede, mg, wo2, zn
        
        chain k [62024]
      36. 2f4v
        automatically matched to d1i94k_
        complexed with ab9, d2c, k, mg, zn
        
        region k:11-129 [132948]
      37. 2qnh
        automatically matched to d1i94k_
        complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
        
        region l:11-126 [150935]
      38. 2hgp
        automatically matched to d1i94k_
        
        region n:11-129 [136430]
      39. 2hgi
        automatically matched to d1i94k_
        
        region n:11-129 [136409]
      40. 2hgr
        automatically matched to d1i94k_
        
        region n:11-129 [136451]
      41. 2ow8
        automatically matched to d1i94k_
        complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
        
        region l:11-126 [139409]
      42. 1x18
        automatically matched to d1i94k_
        complexed with du
        
        region g:11-129 [121575]
      43. 1yl4
        automatically matched to d1i94k_
        
        region n:11-129 [123607]
      44. 2b64
        automatically matched to d1i94k_
        complexed with psu, yyg
        
        region k:11-129 [127943]
      45. 2b9o
        automatically matched to d1i94k_
        complexed with psu, yyg
        
        region k:11-129 [128173]
      46. 2b9m
        automatically matched to d1i94k_
        complexed with psu, yyg
        
        region k:11-129 [128136]
    2. Escherichia coli [TaxId: 562] [159644] (24)
      SQ P0A7R9 12-128
      1. 2qal
        automatically matched to 2AVY K:12-128
        complexed with mg, nmy
        
        region k:12-128 [150224]
      2. 2qan
        automatically matched to 2AVY K:12-128
        complexed with mg, nmy
        
        region k:12-128 [150278]
      3. 2qbf
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [150498]
      4. 2qbd
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [150444]
      5. 1vs5
        automatically matched to 2AVY K:12-128
        complexed with ksg, mg
        
        region k:12-128 [144445]
      6. 3df1
        automatically matched to 2AVY K:12-128
        complexed with hyg, mg
        
        region k:12-128 [157613]
      7. 3df3
        automatically matched to 2AVY K:12-128
        complexed with hyg, mg
        
        region k:12-128 [157667]
      8. 1vs7
        automatically matched to 2AVY K:12-128
        complexed with ksg, mg
        
        region k:12-128 [144486]
      9. 2qoy
        automatically matched to 2AVY K:12-128
        complexed with mg, nmy, scm
        
        region k:12-128 [151101]
      10. 2qp0
        automatically matched to 2AVY K:12-128
        complexed with mg, nmy, scm
        
        region k:12-128 [151154]
      11. 2avy
        Representative structure
        complexed with mg
        
        region k:12-128 [144852]
      12. 2aw7
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [144895]
      13. 2qb9
        automatically matched to 2AVY K:12-128
        complexed with lll, mg
        
        region k:12-128 [150338]
      14. 2qbb
        automatically matched to 2AVY K:12-128
        complexed with lll, mg
        
        region k:12-128 [150391]
      15. 2i2p
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [145430]
      16. 2i2u
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [145472]
      17. 2qbh
        automatically matched to 2AVY K:12-128
        complexed with lll, mg
        
        region k:12-128 [150552]
      18. 2qbj
        automatically matched to 2AVY K:12-128
        complexed with lll, mg
        
        region k:12-128 [150606]
      19. 2qou
        automatically matched to 2AVY K:12-128
        complexed with mg, scm
        
        region k:12-128 [150995]
      20. 2qow
        automatically matched to 2AVY K:12-128
        complexed with mg, scm
        
        region k:12-128 [151048]
      21. 2z4m
        automatically matched to 2AVY K:12-128
        complexed with mg, par
        
        region k:12-128 [154116]
      22. 2vho
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [153133]
      23. 2z4k
        automatically matched to 2AVY K:12-128
        complexed with mg, par
        
        region k:12-128 [154062]
      24. 2vhp
        automatically matched to 2AVY K:12-128
        complexed with mg
        
        region k:12-128 [153155]
2. ERF1/Dom34 middle domain-like [53143] (3)
  1. Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 [53144]
    1. Human (Homo sapiens) [TaxId: 9606] [53145] (2)
      1. 1dt9
        
        region a:143-276 [33738]
      2. 2hst
        automatically matched to d1dt9a1
        
        region a:143-275 [147395]
  2. Dom34 [159645]
    1. Saccharomyces cerevisiae [TaxId: 4932] [159646] (3)
      SQ P33309 136-277
      1. 2vgn
        automatically matched to 2VGM A:136-277
        complexed with gol, po4
        
        region a:136-277 [153041]
      2. 2vgn
        automatically matched to 2VGM A:136-277
        complexed with gol, po4
        
        region b:136-277 [153044]
      3. 2vgm
        
        region a:136-277 [153038]
  3. Cell division protein pelota [159647]
    1. Thermoplasma acidophilum [TaxId: 2303] [159648] (1)
      SQ Q9HJ74 127-243
      1. 2qi2
        
        region a:127-243 [150801]
Nitrogenase accessory factor-like [53146] (2)
uperfamily
1. MTH1175-like [53147] (3)
  1. Hypothetical protein MTH1175 [53148]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [53149] (1)
      1. 1eo1
        structural genomics
        
        chain a [33739]
  2. Hypothetical protein TM1816 [82446]
    1. Thermotoga maritima [TaxId: 2336] [82447] (2)
      SQ Q9X2D6 1-115
      1. 1o13
        structural genomics
        CASP5
        complexed with mse
        
        chain a [80762]
      2. 1t3v
        Structural genomics target
        
        chain a [112232]
  3. Hypothetical protein TM1290 [110643]
    1. Thermotoga maritima [TaxId: 2336] [110644] (1)
      SQ Q9X116
      1. 1rdu
        Structural genomics target
        
        chain a [104890]
2. Nitrogenase accessory factor [102496] (1)
  capable of binding the iron molybdenum cofactor, FeMo-co
  1. NafY core domain [102497]
    1. Azotobacter vinelandii [TaxId: 354] [102498] (1)
      1. 1p90
        complexed with egl
        
        chain a [94377]
DNA repair protein MutS, domain II [53150] (1)
uperfamily
1. DNA repair protein MutS, domain II [53151] (2)
  1. DNA repair protein MutS, domain II [53152]
    1. Thermus aquaticus [TaxId: 271] [53153] (4)
      1. 1ewq
        CASP4
        complexed with edo, so4
        
        region a:121-266 [33740]
        region b:1121-1266 [33741]
      2. 1fw6
        protein/DNA complex; complexed with adp, mg, so4
        
        region a:121-266 [33742]
        region b:1121-1266 [33743]
      3. 1nne
        complexed with adp, bef, edo, so4
        
        region a:121-266 [85897]
        region b:1121-1266 [85901]
      4. 1ewr
        
        region a:131-266 [33744]
        region b:1117-1266 [33745]
    2. Escherichia coli [TaxId: 562] [53154] (10)
      SQ P23909 2-800
      1. 1wb9
        automatically matched to d1e3ma3
        complexed with adp, mg; mutant
        
        region a:117-269 [120835]
      2. 1w7a
        complexed with atp, mo3
        
        region a:117-269 [109220]
        region b:117-269 [109224]
      3. 1e3m
        complexed with adp, mo4
        
        region a:117-269 [33746]
        region b:117-269 [33747]
      4. 1oh6
        complexed with adp, mo4
        
        region a:117-269 [92989]
        region b:117-269 [92993]
      5. 1wbd
        automatically matched to d1e3ma3
        complexed with adp, mg; mutant
        
        region a:117-269 [120843]
      6. 1wbb
        automatically matched to d1e3ma3
        complexed with adp, mg; mutant
        
        region a:117-269 [120839]
      7. 1ng9
        complexed with adp, mo6; mutant
        
        region a:117-269 [80482]
        region b:117-269 [80486]
      8. 1oh7
        complexed with adp, mo4
        
        region a:117-269 [92997]
        region b:117-269 [93001]
      9. 1oh5
        complexed with adp, mo4
        
        region a:117-269 [92981]
        region b:117-269 [92985]
      10. 1oh8
        complexed with adp, mo4
        
        region a:117-269 [93005]
        region b:117-269 [93009]
Methylated DNA-protein cysteine methyltransferase domain [53155] (1)
uperfamily
1. Methylated DNA-protein cysteine methyltransferase domain [53156] (3)
  1. Ada DNA repair protein [53157]
    1. Escherichia coli [TaxId: 562] [53158] (1)
      1. 1sfe
        
        region a:12-92 [33748]
  2. O6-alkylguanine-DNA alkyltransferase [53159]
    1. Human (Homo sapiens) [TaxId: 9606] [53160] (9)
      SQ P16455 6-176
      1. 1qnt
        
        region a:6-91 [33749]
      2. 1eh7
        complexed with zn
        
        region a:5-91 [33750]
      3. 1eh6
        complexed with zn
        
        region a:5-91 [33751]
      4. 1eh8
        complexed with zn
        
        region a:5-91 [33752]
      5. 1yfh
        automatically matched to d1eh6a2
        complexed with xcy, zn
        
        region a:5-91 [123063]
      6. 1yfh
        automatically matched to d1eh6a2
        complexed with xcy, zn
        
        region b:5-91 [123065]
      7. 1yfh
        automatically matched to d1eh6a2
        complexed with xcy, zn
        
        region c:5-91 [123067]
      8. 1t38
        complexed with 6og; mutant
        
        region a:6-91 [106334]
      9. 1t39
        complexed with e1x
        
        region a:6-91 [106336]
        region b:7-91 [106338]
    2. Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [53161] (1)
      1. 1mgt
        
        region a:1-88 [33753]