Structural Classification of Proteins
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Superfamily: Ribonuclease H-like

consists of one domain of this fold
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribonuclease H [53099] (11)
    1. RNase H (RNase HI) [53100]
      1. Escherichia coli [TaxId: 562] [53101] (37)
        SQ P0A7Y4
        1. 1jl1 picpic
          mutant
          1. chain a [66821] picpiclink
        2. 1f21 picpic
          mutant
          1. chain a [33550] picpiclink
        3. 2rn2 picpic
          1. chain a [33551] picpiclink
        4. 1jxb picpic
          mutant
          1. chain a [71931] picpiclink
        5. 1rbu picpic
          mutant
          1. chain a [33552] picpiclink
        6. 1rbv picpic
          mutant
          1. chain a [33553] picpiclink
        7. 1rbt picpic
          mutant
          1. chain a [33555] picpiclink
        8. 1wsh picpic
          mutant
          1. chain a [114849] picpiclink
          2. chain b [114850] picpiclink
          3. chain c [114851] picpiclink
          4. chain d [114852] picpiclink
        9. 1lav picpic
          mutant
          1. chain a [33554] picpiclink
        10. 1law picpic
          mutant
          1. chain a [33557] picpiclink
        11. 1g15 picpic
          complexed with mn; mutant
          1. chain a [60197] picpiclink
        12. 1rbr picpic
          mutant
          1. chain a [33556] picpiclink
        13. 1kva picpic
          mutant
          1. chain a [33559] picpiclink
        14. 1rdb picpic
          mutant
          1. chain a [33561] picpiclink
        15. 1wsi picpic
          mutant
          1. chain a [114853] picpiclink
          2. chain b [114854] picpiclink
          3. chain c [114855] picpiclink
          4. chain d [114856] picpiclink
        16. 1rbs picpic
          mutant
          1. chain a [33558] picpiclink
        17. 1kvc picpic
          mutant
          1. chain a [33560] picpiclink
        18. 1wsj picpic
          mutant
          1. chain a [114857] picpiclink
          2. chain b [114858] picpiclink
          3. chain c [114859] picpiclink
          4. chain d [114860] picpiclink
          5. chain e [114861] picpiclink
          6. chain f [114862] picpiclink
          7. chain g [114863] picpiclink
          8. chain h [114864] picpiclink
        19. 1kvb picpic
          mutant
          1. chain a [33562] picpiclink
        20. 1rnh picpic
          complexed with so4
          1. chain a [33563] picpiclink
        21. 1wsg picpic
          complexed with mn; mutant
          1. region a:1-155 [121234] picpiclink
        22. 1wsg picpic
          automatically matched to 1WSG A:1-155
          complexed with mn; mutant
          1. region b:1-155 [121235] picpiclink
        23. 1wsg picpic
          automatically matched to 1WSG A:1-155
          complexed with mn; mutant
          1. region c:1-155 [121236] picpiclink
        24. 1wsg picpic
          automatically matched to 1WSG A:1-155
          complexed with mn; mutant
          1. region d:1-155 [121237] picpiclink
        25. 1gob picpic
          mutant
          1. chain a [33565] picpiclink
        26. 1goa picpic
          mutant
          1. chain a [33564] picpiclink
        27. 1goc picpic
          mutant
          1. chain a [33566] picpiclink
        28. 1rda picpic
          mutant
          1. chain a [33567] picpiclink
        29. 1wsf picpic
          complexed with mn; mutant
          1. region a:1-155 [121230] picpiclink
        30. 1wsf picpic
          automatically matched to 1WSF A:1-155
          complexed with mn; mutant
          1. region b:1-155 [121231] picpiclink
        31. 1wsf picpic
          automatically matched to 1WSF A:1-155
          complexed with mn; mutant
          1. region c:1-155 [121232] picpiclink
        32. 1wsf picpic
          automatically matched to 1WSF A:1-155
          complexed with mn; mutant
          1. region d:1-155 [121233] picpiclink
        33. 1wse picpic
          complexed with mn; mutant
          1. region a:1-155 [121228] picpiclink
        34. 1wse picpic
          automatically matched to 1WSE A:1-155
          complexed with mn; mutant
          1. region b:1-155 [121229] picpiclink
        35. 1rdc picpic
          mutant
          1. chain a [33568] picpiclink
        36. 1rdd picpic
          complexed with mg
          1. chain a [33569] picpiclink
        37. 1rch picpic
          1. chain a [33570] picpiclink
      2. Thermus thermophilus [TaxId: 274] [53102] (1)
        1. 1ril picpic
          1. chain a [33571] picpiclink
      3. synthetic, Escherichia coli/Thermus thermophilus chimera [69532] (1)
        1. 1jl2 picpic
          1. chain a [66822] picpiclink
          2. chain b [66823] picpiclink
          3. chain c [66824] picpiclink
          4. chain d [66825] picpiclink
    2. Class II ribonuclease H (RNase HII) [53103]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53104] (1)
        1. 1eke picpic
          complexed with mes
          1. chain a [33572] picpiclink
          2. chain b [33573] picpiclink
      2. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [64093] (2)
        1. 1i39 picpic
          1. chain a [61585] picpiclink
        2. 1i3a picpic
          complexed with nco
          1. chain a [61586] picpiclink
      3. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [64094] (2)
        1. 1io2 picpic
          1. chain a [62612] picpiclink
        2. 2dfh picpic
          automatically matched to d1io2a_
          mutant
          1. region a:1-212 [131472] picpiclink
      4. Archaeon Pyrococcus horikoshii [TaxId: 53953] [110639] (2)
        SQ O59351
        1. 1uax picpic
          1. chain a [107764] picpiclink
          2. chain b [107765] picpiclink
        2. 1x1p picpic
          automatically matched to d1uaxa_
          1. region a:1-196 [121594] picpiclink
      5. Thermotoga maritima [TaxId: 2336] [142489] (1)
        SQ Q9X017 1-221
        1. 2etj picpic
          complexed with cl, edo, mg
          1. region a:1-221 [132360] picpiclink
    3. HIV RNase H (Domain of reverse transcriptase) [53105]
      1. Human immunodeficiency virus type 1 [TaxId: 11676] [53106] (88)
        SQ P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! SQ P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! SQ P04585 158-698 # chain A coverage; chain B is shorter: 159-595
        1. 1vrt picpicxrefxref
          complexed with cya, mg, nev
          1. region a:430-539 [33574] picpiclink
        2. 1s1t picpicxref
          complexed with po4, uc1; mutant
          1. region a:430-539 [105205] picpiclink
        3. 1c1b picpicxrefxref
          complexed with gca
          1. region a:430-543 [33605] picpiclink
        4. 1vru picpicxrefxref
          complexed with aap, cya
          1. region a:430-539 [33575] picpiclink
        5. 1jla picpicxrefxref
          complexed with tnk; mutant
          1. region a:430-553 [66833] picpiclink
        6. 1rt1 picpicxref
          complexed with mkc
          1. region a:430-539 [33579] picpiclink
        7. 1rth picpicxref
          complexed with cya, u05
          1. region a:430-543 [33576] picpiclink
        8. 1eet picpicxrefxref
          complexed with bfu; mutant
          1. region a:430-557 [33608] picpiclink
        9. 1jkh picpicxrefxref
          complexed with efz; mutant
          1. region a:430-554 [66797] picpiclink
        10. 1ikx picpicxrefxref
          complexed with pnu; mutant
          1. region a:430-557 [62533] picpiclink
        11. 1c0u picpicxrefxref
          complexed with bm5
          1. region a:430-539 [33610] picpiclink
        12. 1hrh picpic
          1. region a:432-556 [33577] picpiclink
          2. region b:432-554 [33578] picpiclink
        13. 1rt2 picpicxrefxref
          complexed with tnk
          1. region a:430-543 [33580] picpiclink
        14. 1tkt picpicxref
          complexed with h12, mg, po4
          1. region a:430-537 [112482] picpiclink
        15. 1rev picpicxrefxref
          complexed with mg, trb
          1. region a:430-539 [33582] picpiclink
        16. 1c0t picpicxrefxref
          complexed with bm1
          1. region a:430-539 [33606] picpiclink
        17. 1fk9 picpicxrefxref
          complexed with efz
          1. region a:430-539 [33607] picpiclink
        18. 1klm picpicxrefxref
          complexed with spp
          1. region a:430-539 [33583] picpiclink
        19. 1c1c picpicxrefxref
          complexed with 612
          1. region a:430-539 [33609] picpiclink
        20. 1lwc picpicxrefxref
          complexed with csd, nvp, po4; mutant
          1. region a:430-537 [78262] picpiclink
        21. 1s1w picpicxref
          complexed with uc1; mutant
          1. region a:430-539 [105214] picpiclink
        22. 1jlg picpicxrefxref
          complexed with uc1; mutant
          1. region a:430-539 [66848] picpiclink
        23. 1s1v picpicxref
          complexed with tnk; mutant
          1. region a:430-539 [105211] picpiclink
        24. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg
          1. region a:430-554 [33587] picpiclink
        25. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
          duplicate of 1HMV A:430-554
          complexed with mg
          1. region c:430-554 [118502] picpiclink
        26. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
          duplicate of 1HMV A:430-554
          complexed with mg
          1. region e:430-554 [118505] picpiclink
        27. 1hmv picpicxrefxrefxrefxrefxrefxrefxrefxref
          duplicate of 1HMV A:430-554
          complexed with mg
          1. region g:430-554 [118508] picpiclink
        28. 1rtj picpicxref
          complexed with cya
          1. region a:430-543 [33581] picpiclink
        29. 1tkx picpicxref
          complexed with gwb
          1. region a:430-537 [112485] picpiclink
        30. 1ep4 picpicxrefxref
          complexed with s11
          1. region a:430-539 [33614] picpiclink
        31. 1lwe picpicxrefxref
          complexed with csd, nvp, po4; mutant
          1. region a:430-554 [78267] picpiclink
        32. 1dtt picpicxrefxref
          complexed with ftc
          1. region a:430-543 [33611] picpiclink
        33. 1tl3 picpicxref
          complexed with h20, po4
          1. region a:430-537 [112496] picpiclink
        34. 1tkz picpicxref
          complexed with h16, po4
          1. region a:430-537 [112490] picpiclink
        35. 1jlf picpicxrefxref
          complexed with nvp; mutant
          1. region a:430-539 [66845] picpiclink
        36. 1iky picpicxrefxref
          complexed with msd; mutant
          1. region a:430-557 [62536] picpiclink
        37. 1ikw picpicxrefxref
          complexed with efz; mutant
          1. region a:430-557 [62530] picpiclink
        38. 1fko picpicxrefxref
          complexed with efz; mutant
          1. region a:430-543 [33612] picpiclink
        39. 1rt6 picpicxref
          complexed with po4, uc3
          1. region a:430-539 [33613] picpiclink
        40. 1rt5 picpicxrefxref
          complexed with po4, uc2
          1. region a:430-542 [33615] picpiclink
        41. 1rt4 picpicxrefxref
          complexed with po4, uc1
          1. region a:430-542 [33618] picpiclink
        42. 1rti picpicxref
          complexed with cya, hef
          1. region a:430-543 [33585] picpiclink
        43. 1lwf picpicxrefxref
          complexed with csd, nvp; mutant
          1. region a:430-554 [78270] picpiclink
        44. 1jlb picpicxrefxref
          complexed with nvp; mutant
          1. region a:430-554 [66836] picpiclink
        45. 1lw0 picpicxrefxref
          complexed with csd, nvp, po4; mutant
          1. region a:430-537 [78248] picpiclink
        46. 1dlo picpicxrefxref
          mutant
          1. region a:430-556 [33584] picpiclink
        47. 1s1x picpicxref
          complexed with nvp; mutant
          1. region a:430-539 [105217] picpiclink
        48. 1dtq picpicxrefxref
          complexed with fpt
          1. region a:430-539 [33616] picpiclink
        49. 1fkp picpicxrefxref
          complexed with nvp; mutant
          1. region a:430-542 [33617] picpiclink
        50. 1tl1 picpicxref
          complexed with h18, po4
          1. region a:430-537 [112493] picpiclink
        51. 1tv6 picpicxref
          complexed with cp9
          1. region a:430-539 [107347] picpiclink
        52. 1jlq picpicxrefxref
          complexed with sbn
          1. region a:430-540 [63173] picpiclink
        53. 1lw2 picpicxrefxref
          complexed with csd, po4, u05; mutant
          1. region a:430-539 [78251] picpiclink
        54. 1s9e picpicxrefxref
          complexed with adb; mutant
          1. region a:430-552 [98752] picpiclink
        55. 1r0a picpicxrefxrefxrefxrefxref
          complexed with 2da, glc, gol, mg
          1. region a:430-558 [104676] picpiclink
        56. 1ikv picpicxrefxref
          complexed with efz; mutant
          1. region a:430-557 [62527] picpiclink
        57. 1rt3 picpicxrefxref
          complexed with u05; mutant
          1. region a:430-537 [33590] picpiclink
        58. 1jlc picpicxrefxref
          complexed with ftc; mutant
          1. region a:430-547 [66839] picpiclink
        59. 1hqe picpicxrefxref
          mutant
          1. region a:430-554 [61130] picpiclink
        60. 1s9g picpicxrefxref
          complexed with abz; mutant
          1. region a:430-543 [98755] picpiclink
        61. 1s1u picpicxref
          complexed with nvp; mutant
          1. region a:430-539 [105208] picpiclink
        62. 1rt7 picpicxref
          complexed with po4, uc4
          1. region a:430-539 [33619] picpiclink
        63. 1hni picpicxrefxref
          complexed with aaa; mutant
          1. region a:430-558 [33586] picpiclink
        64. 1rtd picpicxrefxref
          complexed with mg, ttp; mutant
          1. region a:430-554 [33591] picpiclink
          2. region c:430-554 [33592] picpiclink
        65. 1jle picpicxrefxref
          mutant
          1. region a:430-549 [66842] picpiclink
        66. 1rdh picpic
          CA-atoms only
          1. region a:432-556 [33588] picpiclink
          2. region b:432-556 [33589] picpiclink
        67. 1hqu picpicxrefxref
          complexed with hby; mutant
          1. region a:430-556 [61157] picpiclink
        68. 1qe1 picpicxrefxref
          mutant
          1. region a:430-556 [33593] picpiclink
        69. 1s6q picpicxrefxref
          complexed with tpb; mutant
          1. region a:430-552 [98601] picpiclink
        70. 1hpz picpicxrefxref
          complexed with aap; mutant
          1. region a:430-556 [61119] picpiclink
        71. 1t03 picpicxrefxrefxrefxrefxrefxref
          complexed with mg, mrg, tfo; mutant
          1. region a:430-558 [99053] picpiclink
        72. 1sv5 picpicxrefxref
          complexed with 65b; mutant
          1. region a:430-552 [99016] picpiclink
        73. 2hmi picpicxrefxrefxrefxrefxrefxref
          protein/protein/DNA complex; mutant
          1. region a:430-558 [33604] picpiclink
        74. 1hnv picpicxrefxref
          complexed with tbo; mutant
          1. region a:430-558 [33594] picpiclink
        75. 1s6p picpicxrefxref
          complexed with iet, mg; mutant
          1. region a:430-552 [98598] picpiclink
        76. 1suq picpicxrefxref
          complexed with 185, mg; mutant
          1. region a:430-552 [99003] picpiclink
        77. 1n6q picpicxrefxrefxrefxrefxrefxref
          complexed with atm, mg, mrg; mutant
          1. region a:430-558 [80204] picpiclink
        78. 1t05 picpicxrefxref
          complexed with ddg, gol, mg, mrg, tnv; mutant
          1. region a:430-554 [99060] picpiclink
        79. 1n5y picpicxrefxrefxrefxrefxrefxref
          complexed with atm, mg, mrg; mutant
          1. region a:430-558 [80057] picpiclink
        80. 1uwb picpicxrefxref
          complexed with tbo; mutant
          1. region a:430-558 [33596] picpiclink
        81. 1bqm picpicxrefxref
          complexed with hby; mutant
          1. region a:430-556 [33597] picpiclink
        82. 1tvr picpicxrefxref
          complexed with tb9; mutant
          1. region a:430-558 [33595] picpiclink
        83. 1hys picpicxrefxrefxrefxrefxrefxref
          mutant
          1. region a:430-553 [61417] picpiclink
        84. 1bqn picpicxrefxref
          complexed with hby; mutant
          1. region a:430-558 [33599] picpiclink
        85. 3hvt picpicxrefxref
          complexed with nev
          1. region a:430-556 [33598] picpiclink
        86. 1j5o picpicxrefxrefxrefxrefxrefxref
          mutant
          1. region a:430-558 [71568] picpiclink
        87. 1hvu picpicxrefxref
          protein/RNA complex
          1. region a:430-554 [33600] picpiclink
          2. region d:430-554 [33601] picpiclink
          3. region g:430-554 [33602] picpiclink
          4. region j:430-554 [33603] picpiclink
        88. 1o1w picpic
          RNase H domain only
          1. chain a [81078] picpiclink
      2. Human immunodeficiency virus type 2 [TaxId: 11709] [82443] (1)
        1. 1mu2 picpicxrefxref
          complexed with gol, so4; mutant
          1. region a:430-555 [79469] picpiclink
    4. BH0863-like Ribonuclease H [142490]
      new class of RNase H
      1. Bacillus halodurans [TaxId: 86665] [142491] (15)
        SQ Q9KEI9 61-193! SQ Q9KEI9 62-193
        BH0863
        1. 1zbf picpic
          complexed with so4; mutant
          1. region a:62-193 [124850] picpiclink
        2. 2g8k picpic
          automatically matched to 1ZBL A:62-193
          complexed with ca; mutant
          1. region a:62-193 [134774] picpiclink
        3. 2g8i picpic
          automatically matched to 1ZBL A:62-193
          complexed with cl, mn, mpd; mutant
          1. region a:62-193 [134772] picpiclink
        4. 2g8f picpic
          complexed with cl, mg; mutant
          1. region a:61-193 [134770] picpiclink
        5. 2r7y picpic
          automatically matched to d1zbfa1
          complexed with mg, po4, sdg; mutant
          1. region a:62-193 [151657] picpiclink
        6. 2g8v picpic
          automatically matched to 2G8F A:61-193
          complexed with eoh, mg; mutant
          1. region a:61-193 [134787] picpiclink
        7. 2g8h picpic
          automatically matched to 1ZBL A:62-193
          complexed with mg, vo4; mutant
          1. region a:62-193 [134771] picpiclink
        8. 3d0p picpic
          automatically matched to d1zbfa1
          complexed with na; mutant
          1. region a:62-193 [157172] picpiclink
        9. 3d0p picpic
          automatically matched to d1zbfa1
          complexed with na; mutant
          1. region c:62-193 [157173] picpiclink
        10. 1zbi picpic
          automatically matched to 1ZBF A:62-193
          complexed with mg; mutant
          1. region a:62-193 [124853] picpiclink
        11. 1zbi picpic
          automatically matched to 1ZBF A:62-193
          complexed with mg; mutant
          1. region b:62-193 [124854] picpiclink
        12. 2g8w picpic
          automatically matched to 2G8F A:61-193
          complexed with ca; mutant
          1. region a:61-193 [134788] picpiclink
        13. 1zbl picpic
          complexed with mg; mutant
          1. region a:62-193 [124856] picpiclink
        14. 1zbl picpic
          automatically matched to 1ZBL A:62-193
          complexed with mg; mutant
          1. region b:62-193 [124857] picpiclink
        15. 2g8u picpic
          automatically matched to 1ZBF A:62-193
          complexed with mg; mutant
          1. region a:62-193 [134786] picpiclink
  2. Retroviral integrase, catalytic domain [53107] (3)
    1. Retroviral integrase, catalytic domain [53108]
      1. Rous sarcoma virus RSV [TaxId: 11886] [53109] (21)
        1. 1cxq picpic
          complexed with epe, gol; mutant
          1. chain a [33621] picpiclink
        2. 1czb picpic
          complexed with epe; mutant
          1. chain a [33622] picpiclink
        3. 1cz9 picpic
          complexed with cit, sul; mutant
          1. chain a [33623] picpiclink
        4. 1cxu picpic
          complexed with cit, gol; mutant
          1. chain a [33624] picpiclink
        5. 1vsd picpic
          complexed with epe, mg, ohe
          1. chain a [33625] picpiclink
        6. 1asu picpic
          complexed with epe; mutant
          1. chain a [33626] picpiclink
        7. 1asw picpic
          complexed with epe, ipa; mutant
          1. chain a [33627] picpiclink
        8. 1a5x picpic
          complexed with y3
          1. chain a [33630] picpiclink
        9. 1a5v picpic
          complexed with mn, y3
          1. chain a [33629] picpiclink
        10. 1vsf picpic
          complexed with epe, mn
          1. chain a [33628] picpiclink
        11. 1a5w picpic
          complexed with y3
          1. chain a [33632] picpiclink
        12. 1vse picpic
          complexed with epe
          1. chain a [33631] picpiclink
        13. 1vsh picpic
          complexed with epe, ocy, zn
          1. chain a [33633] picpiclink
        14. 1vsm picpic
          1. chain a [33635] picpiclink
        15. 1asv picpic
          complexed with ohe; mutant
          1. chain a [33634] picpiclink
        16. 1vsj picpic
          complexed with cd, epe, ocy
          1. chain a [33636] picpiclink
        17. 1vsi picpic
          complexed with ca, epe, ocy
          1. chain a [33638] picpiclink
        18. 1vsl picpic
          complexed with zn2; mutant
          1. chain a [33637] picpiclink
        19. 1vsk picpic
          mutant
          1. chain a [33639] picpiclink
        20. 1c0m picpicxref
          mutant
          1. region a:49-216 [33640] picpiclink
          2. region b:54-216 [33641] picpiclink
          3. region c:49-216 [33642] picpiclink
          4. region d:54-216 [33643] picpiclink
        21. 1c1a picpicxref
          mutant
          1. region a:52-216 [33644] picpiclink
          2. region b:55-216 [33645] picpiclink
      2. Human immunodeficiency virus type 1 [TaxId: 11676] [53110] (19)
        1. 1exq picpic
          complexed with cd, cl, so4; mutant
          1. chain a [33646] picpiclink
          2. chain b [33647] picpiclink
        2. 1hyv picpic
          complexed with caf, cl, so4, tta; mutant
          1. chain a [61424] picpiclink
        3. 1b9d picpic
          complexed with cac, so4; mutant
          1. chain a [33649] picpiclink
        4. 1b9f picpic
          complexed with cac, so4; mutant
          1. chain a [33648] picpiclink
        5. 2b4j picpicxrefxref
          automatically matched to d1biza_
          complexed with gol, po4; mutant
          1. region a:57-208 [127833] picpiclink
        6. 2b4j picpicxrefxref
          automatically matched to d1biza_
          complexed with gol, po4; mutant
          1. region b:57-208 [127834] picpiclink
        7. 1b92 picpic
          complexed with cac, so4; mutant
          1. chain a [33654] picpiclink
        8. 1bis picpic
          mutant
          1. chain a [33650] picpiclink
          2. chain b [33651] picpiclink
        9. 1biz picpic
          complexed with cac; mutant
          1. chain a [33652] picpiclink
          2. chain b [33653] picpiclink
        10. 1bl3 picpic
          complexed with mg; mutant
          1. chain a [33655] picpiclink
          2. chain b [33656] picpiclink
          3. chain c [33657] picpiclink
        11. 1qs4 picpic
          1. chain a [33658] picpiclink
          2. chain b [33659] picpiclink
          3. chain c [33660] picpiclink
        12. 1itg picpic
          complexed with cac; mutant
          1. chain a [33661] picpiclink
        13. 1biu picpic
          complexed with mg; mutant
          1. chain a [33663] picpiclink
          2. chain b [33664] picpiclink
          3. chain c [33665] picpiclink
        14. 1hyz picpic
          complexed with caf, cl, so4, tto; mutant
          1. chain a [61426] picpiclink
        15. 1k6y picpicxref
          complexed with k, po4, zn; mutant
          1. region a:56-210 [68240] picpiclink
          2. region b:56-212 [68242] picpiclink
          3. region c:56-209 [68244] picpiclink
          4. region d:56-211 [68246] picpiclink
        16. 1bhl picpic
          complexed with cas; mutant
          1. chain a [33662] picpiclink
        17. 1bi4 picpic
          mutant
          1. chain a [33666] picpiclink
          2. chain b [33667] picpiclink
          3. chain c [33668] picpiclink
        18. 1ex4 picpicxref
          complexed with cps; mutant
          1. region a:56-222 [33670] picpiclink
          2. region b:55-222 [33671] picpiclink
        19. 2itg picpic
          mutant
          1. chain a [33669] picpiclink
      3. Simian immunodeficiency virus [TaxId: 11723] [53111] (1)
        1. 1c6v picpicxref
          mutant
          1. chain a [33672] picpiclink
          2. chain b [33673] picpiclink
          3. chain c [33674] picpiclink
          4. chain d [33675] picpiclink
  3. mu transposase, core domain [53112] (1)
    1. mu transposase, core domain [53113]
      1. Bacteriophage mu [TaxId: 10677] [53114] (2)
        1. 1bco picpicxref
          1. region a:258-480 [33676] picpiclink
        2. 1bcm picpicxref
          1. region a:257-480 [33677] picpiclink
          2. region b:258-480 [33678] picpiclink
  4. Transposase inhibitor (Tn5 transposase) [53115] (1)
    1. Transposase inhibitor (Tn5 transposase) [53116]
      contains additional all-alpha subdomains in both N- and C-terminal regions
      1. Escherichia coli [TaxId: 562] [53117] (6)
        1. 1mus picpic
          complexed with resolved outside end DNA
          complexed with egl, mg, mn; mutant
          1. chain a [79494] picpiclink
        2. 3ecp picpic
          automatically matched to d1muha_
          complexed with gol; mutant
          1. region a:5-477 [158116] picpiclink
        3. 1muh picpic
          complexed with transposon end DNA
          complexed with mg, mn; mutant
          1. chain a [79485] picpiclink
        4. 1mur picpic
          20mer outside end 2 mn complex
          complexed with mn; mutant
          1. chain a [79493] picpiclink
        5. 1mm8 picpic
          complexed with Me DNA
          complexed with mn; mutant
          1. chain a [79301] picpiclink
        6. 1b7e picpic
          complexed with tpt
          1. chain a [33680] picpiclink
  5. DnaQ-like 3'-5' exonuclease [53118] (26)
    contains Pfam 00929
    1. Exonuclease domain of prokaryotic DNA polymerase [53119]
      part of Klenow fragment, KF
      1. Escherichia coli [TaxId: 562] [53120] (14)
        1. 2kfz picpicxref
          protein/DNA complex; complexed with mg, s, zn
          1. region a:324-518 [33683] picpiclink
        2. 2kfn picpicxref
          protein/DNA complex; complexed with mg, mn, s, zn
          1. region a:324-518 [33682] picpiclink
        3. 1kfs picpicxref
          protein/DNA complex; complexed with mg, zn; mutant
          1. region a:324-518 [33681] picpiclink
        4. 1d8y picpicxref
          1. region a:324-518 [33684] picpiclink
        5. 1d9d picpicxref
          1. region a:324-518 [33688] picpiclink
        6. 1krp picpicxref
          protein/DNA complex; complexed with pst, zn; mutant
          1. region a:324-518 [33685] picpiclink
        7. 1ksp picpicxref
          protein/DNA complex; complexed with pst, zn; mutant
          1. region a:324-518 [33687] picpiclink
        8. 1qsl picpicxref
          complexed with eu; mutant
          1. region a:324-518 [33686] picpiclink
        9. 2kzz picpicxref
          protein/DNA complex; complexed with zn
          1. region a:324-518 [33689] picpiclink
        10. 2kzm picpicxref
          protein/DNA complex; complexed with mn, zn
          1. region a:324-518 [33690] picpiclink
        11. 1d9f picpicxref
          1. region a:324-518 [33691] picpiclink
        12. 1dpi picpicxref
          complexed with zn
          1. region a:326-518 [33692] picpiclink
        13. 1kln picpicxref
          protein/DNA complex; complexed with zn; mutant
          1. region a:324-518 [33693] picpiclink
        14. 1kfd picpicxref
          complexed with ctp
          1. region a:324-518 [33694] picpiclink
      2. Thermus aquaticus [TaxId: 271] [53121] (13)
        1. 1qtm picpicxref
          protein/DNA complex; complexed with 2dt, mg, ttp
          1. region a:293-422 [33695] picpiclink
        2. 1qsy picpicxref
          protein/DNA complex; complexed with 2da, dad, mg; mutant
          1. region a:293-422 [33700] picpiclink
        3. 1cmw picpicxrefxrefxref
          1. region a:290-422 [33701] picpiclink
        4. 1qss picpicxref
          protein/DNA complex; complexed with ddg, dg3, mg; mutant
          1. region a:293-422 [33697] picpiclink
        5. 1jxe picpicxref
          1. region a:293-422 [33705] picpiclink
        6. 3ktq picpicxref
          complexed with ctp, ddc, mg
          1. region a:293-422 [33696] picpiclink
        7. 1bgx picpicxrefxrefxrefxrefxrefxrefxref
          1. region t:290-422 [33699] picpiclink
        8. 1taq picpicxrefxrefxref
          complexed with bgl, zn; mutant
          1. region a:290-422 [33698] picpiclink
        9. 2ktq picpicxref
          complexed with ctp, ddc, mg
          1. region a:295-422 [33702] picpiclink
        10. 5ktq picpicxref
          complexed with ctp
          1. region a:290-422 [33704] picpiclink
        11. 1ktq picpicxref
          1. region a:290-422 [33703] picpiclink
        12. 4ktq picpicxref
          complexed with ddc
          1. region a:294-422 [33706] picpiclink
        13. 1tau picpicxrefxrefxref
          protein/DNA complex; complexed with bgl, zn
          1. region a:290-422 [33707] picpiclink
      3. Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] [53122] (45)
        SQ Q45458 298-876 # 88% sequence identity ! SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
        1. 2hhv picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, mg, so4, suc
          1. region a:298-468 [136514] picpiclink
        2. 1u4b picpicxref
          complexed with 8og, mg, so4, suc
          1. region a:299-468 [107664] picpiclink
        3. 1nk4 picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91923] picpiclink
        4. 1njx picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91915] picpiclink
        5. 1l3s picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [84521] picpiclink
        6. 1nk0 picpicxref
          complexed with mes, so4, suc
          1. region a:297-468 [91921] picpiclink
        7. 1l3t picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [84523] picpiclink
        8. 1l3v picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [84527] picpiclink
        9. 1nkc picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91937] picpiclink
        10. 2hhu picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, dcp, mg, so4, suc
          1. region a:298-468 [136512] picpiclink
        11. 1l3u picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [84525] picpiclink
        12. 2hhq picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, mg, so4, suc
          1. region a:298-468 [136506] picpiclink
        13. 1nke picpicxref
          complexed with dcp, mg, so4, suc
          1. region a:297-468 [91939] picpiclink
        14. 2hhw picpicxrefxref
          automatically matched to d1l3sa1
          complexed with 23t, 6og, ddg, mn, so4, suc; mutant
          1. region a:297-468 [136516] picpiclink
        15. 2hhs picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, mg, so4, suc
          1. region a:298-468 [136508] picpiclink
        16. 2hhw picpicxrefxref
          automatically matched to d1l3sa1
          complexed with 23t, 6og, ddg, mn, so4, suc; mutant
          1. region d:297-468 [136518] picpiclink
        17. 1nk8 picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91931] picpiclink
        18. 1nk7 picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91929] picpiclink
        19. 1nk9 picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91933] picpiclink
        20. 1l5u picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [84529] picpiclink
        21. 1njw picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91913] picpiclink
        22. 2hw3 picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, mg, so4, suc
          1. region a:298-468 [136819] picpiclink
        23. 2hvi picpicxrefxref
          automatically matched to d1l3sa1
          complexed with dct, ddg, mg, so4, suc
          1. region a:298-468 [136808] picpiclink
        24. 2hvi picpicxrefxref
          automatically matched to d1l3sa1
          complexed with dct, ddg, mg, so4, suc
          1. region d:298-468 [136810] picpiclink
        25. 1u45 picpicxref
          complexed with 8og, mg, so4, suc
          1. region a:299-468 [107654] picpiclink
        26. 1xc9 picpicxref
          complexed with bp, mg, so4, suc
          1. region a:297-468 [115111] picpiclink
        27. 2hht picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, mg, so4, suc
          1. region a:298-468 [136510] picpiclink
        28. 1njz picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91919] picpiclink
        29. 1u47 picpicxref
          complexed with 8og, mg, so4, suc
          1. region a:299-468 [107658] picpiclink
        30. 1njy picpicxref
          complexed with mg, so4, suc, ttp
          1. region a:297-468 [91917] picpiclink
        31. 1nkb picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91935] picpiclink
        32. 1ua1 picpicxref
          complexed with af, so4
          1. region a:297-468 [107755] picpiclink
        33. 1nk5 picpicxref
          complexed with mg, so4, suc
          1. region a:297-468 [91925] picpiclink
        34. 1u48 picpicxref
          complexed with 8og, mg, so4, suc
          1. region a:299-468 [107660] picpiclink
        35. 1u49 picpicxref
          complexed with 8og, mg, so4, suc
          1. region a:299-468 [107662] picpiclink
        36. 1nk6 picpicxref
          complexed with so4, suc
          1. region a:297-468 [91927] picpiclink
        37. 1xwl picpicxref
          complexed with so4
          1. region a:297-468 [33708] picpiclink
        38. 2bdp picpicxref
          protein/DNA complex; complexed with mg, so4
          1. region a:297-468 [33709] picpiclink
        39. 1ua0 picpicxref
          complexed with af, so4, suc
          1. region a:297-468 [107753] picpiclink
        40. 4bdp picpicxref
          protein/DNA complex; complexed with mg, so4
          1. region a:297-468 [33710] picpiclink
        41. 2hhx picpicxref
          automatically matched to d1l3sa1
          complexed with 6og, so4, suc
          1. region a:298-468 [136520] picpiclink
        42. 1lv5 picpicxref
          complexed with dcp, mg, mn, so4; mutant
          1. region a:297-468 [84719] picpiclink
          2. region b:297-468 [84721] picpiclink
        43. 2hvh picpicxrefxref
          automatically matched to d1l3sa1
          complexed with 6og, dct, ddg, mn, so4, suc
          1. region a:298-468 [136804] picpiclink
        44. 2hvh picpicxrefxref
          automatically matched to d1l3sa1
          complexed with 6og, dct, ddg, mn, so4, suc
          1. region d:298-468 [136806] picpiclink
        45. 3bdp picpicxref
          protein/DNA complex; complexed with 2dt, so4
          1. region a:297-468 [33711] picpiclink
    2. Exonuclease domain of T7 DNA polymerase [53123]
      1. Bacteriophage T7 [TaxId: 10760] [53124] (16)
        SQ P00581
        1. 1x9m picpicxrefxref
          complexed with 2dt, 8fg, mg; mutant
          1. region a:1-210 [114999] picpiclink
        2. 1tk5 picpicxrefxref
          complexed with 1pe, ddg, mes, mg, so4
          1. region a:1-210 [107074] picpiclink
        3. 1t7p picpicxrefxref
          protein/DNA complex; complexed with 2da, dg3, mg; mutant
          1. region a:1-210 [33712] picpiclink
        4. 1x9w picpicxrefxref
          complexed with 2dt, mg; mutant
          1. region a:1-210 [115008] picpiclink
        5. 1sl2 picpicxrefxref
          complexed with 2da, dad, mg, ttd; mutant
          1. region a:1-210 [105706] picpiclink
        6. 1tkd picpicxrefxref
          complexed with 1pe, 8og, d3t, doc, mes, mg, so4
          1. region a:1-210 [107086] picpiclink
        7. 1skr picpicxrefxref
          complexed with 2da, dad, mg; mutant
          1. region a:1-210 [105684] picpiclink
        8. 1sl1 picpicxrefxref
          complexed with 2da, mg, ttd; mutant
          1. region a:1-210 [105703] picpiclink
        9. 1tk0 picpicxrefxref
          complexed with 1pe, 8og, dct, ddg, mes, mg, so4; mutant
          1. region a:1-210 [107063] picpiclink
        10. 1tk8 picpicxrefxref
          complexed with 1pe, 2da, 8og, d3t, mes, mg, so4
          1. region a:1-210 [107079] picpiclink
        11. 1sks picpicxrefxref
          complexed with 2dt, mg, ttd; mutant
          1. region a:1-210 [105687] picpiclink
        12. 1skw picpicxrefxref
          complexed with 2dt, mg; mutant
          1. region a:1-210 [105694] picpiclink
        13. 1t8e picpicxrefxref
          complexed with 2dt, dct, mes, mg, pg4, so4
          1. region a:1-210 [112316] picpiclink
        14. 1x9s picpicxrefxref
          complexed with 2dt, mg; mutant
          1. region a:1-210 [115005] picpiclink
        15. 1zyq picpicxrefxref
          automatically matched to d1skra1
          complexed with 8og, dad, ddg, mg; mutant
          1. region a:1-210 [125846] picpiclink
        16. 1sl0 picpicxrefxref
          complexed with 2dt, dad, mg; mutant
          1. region a:1-210 [105697] picpiclink
          2. region c:1-210 [105700] picpiclink
    3. Exonuclease domain of family B DNA polymerases [53125]
      elaborated with additional structures and the N-terminal subdomain
      1. Escherichia coli [TaxId: 562] [102482] (1)
        DNA polymerase II, additional N-terminal subdomain has an OB-fold with a ferredoxin-like fold insertion
        1. 1q8i picpicxref
          mutant
          1. region a:2-389 [96208] picpiclink
      2. Bacteriophage T4 [TaxId: 10665] [53126] (2)
        additional N-terminal subdomain contains rudimental OB-fold
        1. 1noy picpic
          exonuclease domain only
          protein/DNA complex; complexed with mn, zn
          1. chain a [33713] picpiclink
          2. chain b [33714] picpiclink
        2. 1noz picpic
          exonuclease domain only
          1. chain a [33715] picpiclink
          2. chain b [33716] picpiclink
      3. Bacteriophage RB69 [TaxId: 12353] [53127] (27)
        additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
        1. 1ih7 picpicxref
          complexed with gmp, k
          1. region a:1-375 [62375] picpiclink
        2. 3cq8 picpicxref
          automatically matched to d1clqa1
          complexed with ca, gol, na, ttp; mutant
          1. region a:1-375 [156927] picpiclink
        3. 1ig9 picpicxref
          complexed with ca, doc, ttp; mutant
          1. region a:1-375 [62367] picpiclink
        4. 2dy4 picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with ctg; mutant
          1. region a:1-375 [131882] picpiclink
        5. 2dy4 picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with ctg; mutant
          1. region b:1-375 [131884] picpiclink
        6. 2dy4 picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with ctg; mutant
          1. region c:1-375 [131886] picpiclink
        7. 2dy4 picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with ctg; mutant
          1. region d:1-375 [131888] picpiclink
        8. 2ozm picpicxref
          automatically matched to d1clqa1
          complexed with 3dr, ddg, mg, n5p; mutant
          1. region a:1-375 [149115] picpiclink
        9. 1clq picpicxref
          1. region a:1-375 [33717] picpiclink
        10. 2ozs picpicxref
          automatically matched to d1clqa1
          complexed with ddg, dtp, mg; mutant
          1. region a:1-375 [149127] picpiclink
        11. 2p5g picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region a:1-375 [149240] picpiclink
        12. 2p5g picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region b:1-375 [149242] picpiclink
        13. 2p5g picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region c:1-375 [149244] picpiclink
        14. 2p5g picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region d:2-375 [149246] picpiclink
        15. 1q9y picpicxref
          complexed with 8og, ca, dcp, doc; mutant
          1. region a:1-375 [96336] picpiclink
        16. 1q9x picpicxref
          complexed with 3dr, ca, dgp, doc; mutant
          1. region a:1-375 [96328] picpiclink
          2. region b:1-375 [96330] picpiclink
          3. region c:1-375 [96332] picpiclink
          4. region d:1-375 [96334] picpiclink
        17. 2p5o picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region a:1-375 [139498] picpiclink
        18. 2p5o picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region b:1-375 [139500] picpiclink
        19. 2p5o picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region c:1-375 [139502] picpiclink
        20. 2p5o picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr; mutant
          1. region d:1-375 [139504] picpiclink
        21. 2oyq picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr, mg, n5i, n5p; mutant
          1. region a:1-375 [149070] picpiclink
        22. 2oyq picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr, mg, n5i, n5p; mutant
          1. region b:1-375 [149072] picpiclink
        23. 2oyq picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr, mg, n5i, n5p; mutant
          1. region c:1-375 [149074] picpiclink
        24. 2oyq picpicxrefxrefxrefxref
          automatically matched to d1clqa1
          complexed with 3dr, mg, n5i, n5p; mutant
          1. region d:2-375 [149076] picpiclink
        25. 1waj picpicxref
          complexed with 5gp
          1. region a:1-375 [33718] picpiclink
        26. 1waf picpicxref
          complexed with gmp
          1. region a:1-375 [33719] picpiclink
          2. region b:1-375 [33720] picpiclink
        27. 2atq picpicxrefxref
          automatically matched to d1clqa1
          complexed with gdp, zn; mutant
          1. region a:1-375 [127303] picpiclink
      4. Archaeon Thermococcus gorgonarius [TaxId: 71997] [53128] (3)
        additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
        1. 1tgo picpicxref
          1. region a:1-347 [33721] picpiclink
        2. 2vwk picpicxref
          automatically matched to d1tgoa1
          complexed with na, so4; mutant
          1. region a:1-347 [153677] picpiclink
        3. 2vwj picpicxref
          automatically matched to d1qqca1
          complexed with k; mutant
          1. region a:1-347 [153675] picpiclink
      5. Archaeon Thermococcus sp., 9on-7 [TaxId: 35749] [53129] (1)
        additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
        1. 1qht picpicxref
          mutant
          1. region a:1-347 [33722] picpiclink
      6. Archaeon Desulfurococcus tok [TaxId: 108142] [53130] (2)
        additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
        1. 1d5a picpicxref
          complexed with mg, so4
          1. region a:1-347 [33723] picpiclink
        2. 1qqc picpicxref
          complexed with mg, so4
          1. region a:1-347 [33724] picpiclink
      7. Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [53131] (2)
        SQ P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
        additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
        1. 1wn7 picpicxref
          complexed with gol, ni; mutant
          1. region a:1-347 [121088] picpiclink
        2. 1wns picpicxref
          1. region a:1-347 [109437] picpiclink
      8. Sulfolobus solfataricus [TaxId: 2287] [117647] (1)
        SQ P26811 40-864
        1. 1s5j picpicxref
          complexed with mg, sul
          1. region a:40-449 [112040] picpiclink
    4. N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III [82444]
      1. Escherichia coli [TaxId: 562] [82445] (5)
        1. 2gui picpic
          automatically matched to d1j53a_
          complexed with egl, mn, peg, u5p
          1. region a:7-180 [135737] picpiclink
        2. 1j54 picpic
          complexed with egl, mn, tmp
          1. chain a [77077] picpiclink
        3. 1j53 picpic
          complexed with egl, mn, tmp
          1. chain a [77076] picpiclink
        4. 2ido picpicxrefxref
          automatically matched to d1j53a_
          complexed with edo, mn, tmp
          1. region a:7-180 [137284] picpiclink
        5. 2ido picpicxrefxref
          automatically matched to d1j53a_
          complexed with edo, mn, tmp
          1. region c:7-180 [137286] picpiclink
    5. Exonuclease I [53132]
      also includes an alpha+beta domain with SH3-like like motif and non-globular C-terminal all-alpha region
      1. Escherichia coli [TaxId: 562] [53133] (1)
        1. 1fxx picpic
          complexed with gol, mg, po4
          1. chain a [33726] picpiclink
      2. Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333] [159630] (3)
        1. 2qxf picpic
          automatically matched to d1fxxa_
          complexed with mg, na, tmp
          1. region a:8-474 [151455] picpiclink
        2. 3c95 picpic
          automatically matched to d1fxxa_
          complexed with mg
          1. region a:8-474 [156121] picpiclink
        3. 3c94 picpic
          automatically matched to d1fxxa_
          complexed with mg
          1. region a:8-474 [156120] picpiclink
    6. Oligoribonuclease [89719]
      1. Haemophilus influenzae [TaxId: 727] [89720] (1)
        HI1715
        1. 1j9a picpic
          CASP4
          structural genomics
          complexed with mse, so4
          1. chain a [84135] picpiclink
      2. Escherichia coli [TaxId: 562] [142492] (6)
        SQ P0A784 1-180
        1. 2igi picpic
          automatically matched to d1ytaa1
          complexed with acy, cd, zn
          1. region a:1-180 [147657] picpiclink
        2. 2igi picpic
          automatically matched to d1ytaa1
          complexed with acy, cd, zn
          1. region b:2-180 [147658] picpiclink
        3. 1yta picpic
          complexed with flc
          1. region a:1-180 [124002] picpiclink
        4. 1yta picpic
          automatically matched to 1YTA A:1-180
          complexed with flc
          1. region b:1-180 [124003] picpiclink
        5. 1yta picpic
          automatically matched to 1YTA A:1-180
          complexed with flc
          1. region c:1-180 [124004] picpiclink
        6. 1yta picpic
          automatically matched to 1YTA A:1-180
          complexed with flc
          1. region d:1-180 [124005] picpiclink
    7. Hypothetical protein AT5G06450 [102483]
      forms a ring-shaped hexamer; function unknown
      1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [102484] (7)
        1. 1vk0 picpic
          structural genomics
          1. chain a [100839] picpiclink
          2. chain b [100840] picpiclink
          3. chain c [100841] picpiclink
          4. chain d [100842] picpiclink
          5. chain e [100843] picpiclink
          6. chain f [100844] picpiclink
        2. 2q3s picpic
          automatically matched to d1vk0a_
          1. region a:1-206 [139802] picpiclink
        3. 2q3s picpic
          automatically matched to d1vk0a_
          1. region b:1-206 [139803] picpiclink
        4. 2q3s picpic
          automatically matched to d1vk0a_
          1. region c:1-206 [139804] picpiclink
        5. 2q3s picpic
          automatically matched to d1vk0a_
          1. region d:1-206 [139805] picpiclink
        6. 2q3s picpic
          automatically matched to d1vk0a_
          1. region e:1-206 [139806] picpiclink
        7. 2q3s picpic
          automatically matched to d1vk0a_
          1. region f:1-206 [139807] picpiclink
    8. Exonuclease ERI1 [117648]
      1. Human (Homo sapiens) [TaxId: 9606] [117649] (1)
        SQ Q8IV48 122-321
        1. 1w0h picpic
          complexed with amp, mg
          1. chain a [114064] picpiclink
    9. Exonuclease domain of phi29 DNA polymerase [117650]
      1. Bacteriophage phi-29 [TaxId: 10756] [117651] (18)
        SQ P03680
        1. 2py5 picpicxrefxref
          automatically matched to d1xhxa1
          complexed with edo; mutant
          1. region a:5-187 [149928] picpiclink
        2. 2py5 picpicxrefxref
          automatically matched to d1xhxa1
          complexed with edo; mutant
          1. region b:5-187 [149930] picpiclink
        3. 2pyj picpicxrefxref
          automatically matched to d1xhxa1
          complexed with dgt, doc, edo, mg, mn; mutant
          1. region a:5-187 [149943] picpiclink
        4. 2pyj picpicxrefxref
          automatically matched to d1xhxa1
          complexed with dgt, doc, edo, mg, mn; mutant
          1. region b:5-187 [149945] picpiclink
        5. 2pyl picpicxref
          automatically matched to d1xhxa1
          complexed with 2da, edo, mg, ttp; mutant
          1. region a:5-187 [149947] picpiclink
        6. 1xhx picpicxref
          complexed with mg, so4; mutant
          1. region a:5-187 [115305] picpiclink
        7. 1xi1 picpicxref
          complexed with mg; mutant
          1. region a:5-187 [115309] picpiclink
        8. 1xhz picpicxref
          mutant
          1. region a:5-187 [115307] picpiclink
        9. 2pzs picpicxrefxrefxrefxref
          automatically matched to d1xhxa1
          mutant
          1. region a:5-187 [149965] picpiclink
        10. 2pzs picpicxrefxrefxrefxref
          automatically matched to d1xhxa1
          mutant
          1. region b:5-187 [149967] picpiclink
        11. 2pzs picpicxrefxrefxrefxref
          automatically matched to d1xhxa1
          mutant
          1. region c:5-187 [149969] picpiclink
        12. 2pzs picpicxrefxrefxrefxref
          automatically matched to d1xhxa1
          mutant
          1. region d:5-187 [149971] picpiclink
        13. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with pb; mutant
          1. region a:6-187 [132498] picpiclink
        14. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EX3 A:6-187
          complexed with pb; mutant
          1. region c:6-187 [132501] picpiclink
        15. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EX3 A:6-187
          complexed with pb; mutant
          1. region e:6-187 [132504] picpiclink
        16. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EX3 A:6-187
          complexed with pb; mutant
          1. region g:6-187 [132507] picpiclink
        17. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EX3 A:6-187
          complexed with pb; mutant
          1. region i:6-187 [132510] picpiclink
        18. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EX3 A:6-187
          complexed with pb; mutant
          1. region k:6-187 [132513] picpiclink
    10. Interferon-stimulated gene 20 kDa protein, ISG20 [117652]
      1. Human (Homo sapiens) [TaxId: 9606] [117653] (1)
        SQ Q96AZ6 6-178
        1. 1wlj picpic
          complexed with act, mn, u5p
          1. chain a [114734] picpiclink
    11. Exosome complex exonuclease RRP6 [142493]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142494] (4)
        SQ Q12149 129-420
        1. 2hbk picpicxref
          automatically matched to 2HBJ A:129-420
          complexed with mn; mutant
          1. region a:129-420 [136314] picpiclink
        2. 2hbj picpicxref
          mutant
          1. region a:129-420 [136312] picpiclink
        3. 2hbl picpicxref
          automatically matched to 2HBJ A:129-420
          complexed with amp, mn, zn; mutant
          1. region a:129-420 [136316] picpiclink
        4. 2hbm picpicxref
          automatically matched to 2HBJ A:129-420
          complexed with mn, u, zn; mutant
          1. region a:129-420 [136318] picpiclink
    12. Ribonuclease D, catalytic domain [142495]
      1. Escherichia coli [TaxId: 562] [142496] (1)
        SQ P09155 1-193
        1. 1yt3 picpicxrefxref
          complexed with so4, zn
          1. region a:1-193 [123994] picpiclink
    13. Ribonuclease T [142497]
      1. Pseudomonas aeruginosa [TaxId: 287] [142498] (2)
        SQ Q9HY82 19-220
        1. 2f96 picpic
          complexed with mg
          1. region a:19-220 [133153] picpiclink
        2. 2f96 picpic
          automatically matched to 2F96 A:19-220
          complexed with mg
          1. region b:19-220 [133154] picpiclink
    14. Three prime repair exonuclease 2, TREX2 [142499]
      1. Human (Homo sapiens) [TaxId: 9606] [142500] (2)
        SQ Q9BQ50 44-271
        1. 1y97 picpic
          1. region a:1-228 [122773] picpiclink
        2. 1y97 picpic
          automatically matched to 1Y97 A:1-228
          1. region b:3-228 [122774] picpiclink
    15. Three prime repair exonuclease 1, TREX1 [159631]
      1. Mouse (Mus musculus) [TaxId: 10090] [159632] (18)
        SQ Q91XB0 5-234! SQ Q91XB0 9-234
        1. 3b6o picpic
          automatically matched to 2O4G A:9-234
          complexed with li, tmp
          1. region a:9-234 [154901] picpiclink
        2. 3b6o picpic
          automatically matched to 2O4G A:9-234
          complexed with li, tmp
          1. region b:9-234 [154902] picpiclink
        3. 3b6o picpic
          automatically matched to 2O4G A:9-234
          complexed with li, tmp
          1. region c:9-234 [154903] picpiclink
        4. 3b6o picpic
          automatically matched to 2O4G A:9-234
          complexed with li, tmp
          1. region d:9-234 [154904] picpiclink
        5. 2o4g picpic
          complexed with mg, tmp
          1. region a:9-234 [148584] picpiclink
        6. 2o4g picpic
          automatically matched to 2O4G A:9-234
          complexed with mg, tmp
          1. region b:9-234 [148585] picpiclink
        7. 2o4g picpic
          automatically matched to 2O4G A:9-234
          complexed with mg, tmp
          1. region c:9-234 [148586] picpiclink
        8. 2o4g picpic
          automatically matched to 2O4G A:9-234
          complexed with mg, tmp
          1. region d:9-234 [148587] picpiclink
        9. 2ioc picpic
          complexed with d5m, mn
          1. region a:5-234 [147742] picpiclink
        10. 2ioc picpic
          automatically matched to 2IOC A:5-234
          complexed with d5m, mn
          1. region b:8-234 [147743] picpiclink
        11. 2oa8 picpic
          automatically matched to 2IOC A:5-234
          complexed with ca
          1. region a:5-234 [148693] picpiclink
        12. 2oa8 picpic
          automatically matched to 2IOC A:5-234
          complexed with ca
          1. region b:5-234 [148694] picpiclink
        13. 3b6p picpic
          automatically matched to 2O4G A:9-234
          complexed with na, tmp, zn
          1. region a:9-234 [154905] picpiclink
        14. 3b6p picpic
          automatically matched to 2O4G A:9-234
          complexed with na, tmp, zn
          1. region b:9-234 [154906] picpiclink
        15. 3b6p picpic
          automatically matched to 2O4G A:9-234
          complexed with na, tmp, zn
          1. region c:9-234 [154907] picpiclink
        16. 3b6p picpic
          automatically matched to 2O4G A:9-234
          complexed with na, tmp, zn
          1. region d:9-234 [154908] picpiclink
        17. 2o4i picpic
          mutant
          1. region a:9-234 [148588] picpiclink
        18. 2o4i picpic
          automatically matched to 2O4I A:9-234
          mutant
          1. region b:9-234 [148589] picpiclink
  6. RuvC resolvase [53134] (1)
    1. RuvC resolvase [53135]
      Holliday junction-specific endonuclease
      1. Escherichia coli [TaxId: 562] [53136] (1)
        1. 1hjr picpic
          1. chain a [33727] picpiclink
          2. chain b [33728] picpiclink
          3. chain c [33729] picpiclink
          4. chain d [33730] picpiclink
  7. Mitochondrial resolvase ydc2 catalytic domain [69533] (1)
    1. Mitochondrial resolvase ydc2 catalytic domain [69534]
      1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [69535] (1)
        1. 1kcf picpicxref
          complexed with so4
          1. region a:39-256 [68435] picpiclink
          2. region b:39-256 [68437] picpiclink
  8. Putative Holliday junction resolvase RuvX [102485] (3)
    1. Hypothetical protein YqgF (RuvX) [102486]
      1. Escherichia coli [TaxId: 562] [102487] (3)
        1. 1nu0 picpic
          structural genomics
          complexed with so4; mutant
          1. chain a [92165] picpiclink
          2. chain b [92166] picpiclink
        2. 1nmn picpic
          structural genomics
          1. chain a [91978] picpiclink
          2. chain b [91979] picpiclink
        3. 1ovq picpic
          structural genomics
          1. chain a [93607] picpiclink
    2. Hypothetical protein YrrK (RuvX) [102488]
      1. Bacillus subtilis [TaxId: 1423] [102489] (1)
        1. 1vhx picpic
          structural genomics
          1. chain a [100712] picpiclink
          2. chain b [100713] picpiclink
    3. Hypothetical protein, YqgF homologue [102490]
      1. Thermus thermophilus [TaxId: 274] [102491] (1)
        1. 1iv0 picpic
          N-terminal fragment lacking the C-terminal helix
          1. chain a [90706] picpiclink
  9. CAF1-like ribonuclease [102492] (2)
    1. Pop2 RNase D domain [102493]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102494] (1)
        1. 1uoc picpic
          complexed with ca, xe
          1. chain a [99686] picpiclink
          2. chain b [99687] picpiclink
    2. CCR4-NOT transcription complex subunit 7, CAF1 [159633]
      1. Human (Homo sapiens) [TaxId: 9606] [159634] (1)
        SQ Q9UIV1 11-262
        1. 2d5r picpicxref
          1. region a:11-262 [146466] picpiclink
  10. PIWI domain [110640] (3)
    Pfam 02171
    1. Argonaute homologue PF0537 [110641]
      includes the middle domain
      1. Pyrococcus furiosus [TaxId: 2261] [110642] (3)
        SQ Q8U3D2
        1. 1u04 picpicxref
          mutant
          1. region a:324-770 [107540] picpiclink
        2. 1z26 picpicxref
          automatically matched to d1u04a2
          complexed with wo4; mutant
          1. region a:324-770 [124373] picpiclink
        3. 1z25 picpicxref
          automatically matched to d1u04a2
          complexed with mn; mutant
          1. region a:324-770 [124371] picpiclink
    2. Argonaute homologue Aq_1447 [142501]
      includes the middle domain
      1. Aquifex aeolicus [TaxId: 63363] [142502] (6)
        SQ O67434 315-706
        1. 1yvu picpicxref
          complexed with ca
          1. region a:315-706 [124121] picpiclink
        2. 2f8s picpicxrefxref
          automatically matched to 1YVU A:315-706
          1. region a:315-706 [133141] picpiclink
        3. 2f8s picpicxrefxref
          automatically matched to 1YVU A:315-706
          1. region b:315-706 [133143] picpiclink
        4. 2f8t picpicxrefxref
          automatically matched to 1YVU A:315-706
          1. region a:315-706 [133145] picpiclink
        5. 2f8t picpicxrefxref
          automatically matched to 1YVU A:315-706
          1. region b:315-706 [133147] picpiclink
        6. 2nub picpicxref
          automatically matched to 1YVU A:315-706
          1. region a:315-706 [138605] picpiclink
    3. Hypothetical protein AF1318 [142503]
      1. Archaeoglobus fulgidus [TaxId: 2234] [142504] (5)
        SQ O28951 11-427
        1. 1w9h picpic
          complexed with cd, cl, ni
          1. region a:93-408 [120785] picpiclink
        2. 2bgg picpic
          automatically matched to 1W9H A:93-408
          complexed with mn
          1. region a:93-408 [128478] picpiclink
        3. 2bgg picpic
          automatically matched to 1W9H A:93-408
          complexed with mn
          1. region b:93-408 [128479] picpiclink
        4. 1ytu picpic
          automatically matched to 1W9H A:93-408
          complexed with mg
          1. region a:93-408 [124014] picpiclink
        5. 1ytu picpic
          automatically matched to 1W9H A:93-408
          complexed with mg
          1. region b:93-408 [124015] picpiclink
  11. TM1739-like [142505] (1)
    Pfam 04251; DUF430; particular similarity to the PIWI domain family
    1. Hypothetical protein TM1739 [142506]
      1. Thermotoga maritima [TaxId: 2336] [142507] (2)
        SQ Q9X261 1-301
        1. 1zup picpic
          1. region a:1-301 [125681] picpiclink
        2. 1zup picpic
          automatically matched to 1ZUP A:1-301
          1. region b:4-301 [125682] picpiclink
  12. Hermes transposase-like [142508] (1)
    1. Transposase Hermes, catalytic domain [142509]
      1. House fly (Musca domestica) [TaxId: 7370] [142510] (1)
        SQ Q25442 163-609
        1. 2bw3 picpicxrefxref
          mutant
          1. region a:163-609 [129318] picpiclink
  13. Tex RuvX-like domain-like [159635] (1)
    1. Transcriptional accessory factor Tex [159636]
      1. Pseudomonas aeruginosa [TaxId: 287] [159637] (3)
        SQ Q9HTY8 325-473
        1. 3bzk picpicxrefxrefxrefxref
          automatically matched to 3BZC A:325-473
          1. region a:325-473 [155781] picpiclink
        2. 3bzc picpicxrefxrefxrefxref
          1. region a:325-473 [155756] picpiclink
        3. 2oce picpicxrefxrefxrefxref
          1. region a:325-473 [148731] picpiclink
  14. Prp8 beta-finger domain-like [159638] (2)
    1. Pre-mRNA-splicing factor 8, Prp8 [159639]
      1. Human (Homo sapiens) [TaxId: 9606] [159640] (3)
        SQ Q6P2Q9 1760-2016! SQ Q6P2Q9 1771-1989
        1. 3enb picpic
          1. region a:1771-1989 [158189] picpiclink
        2. 3enb picpic
          automatically matched to 3ENB A:1771-1989
          1. region b:1774-1988 [158190] picpiclink
        3. 3e9l picpic
          complexed with cl, na
          1. region a:1760-2016 [158068] picpiclink
      2. Saccharomyces cerevisiae [TaxId: 4932] [159641] (5)
        SQ P33334 1833-2087! SQ P33334 1835-2087
        1. 3e9o picpic
          1. region a:1835-2087 [158069] picpiclink
        2. 3e66 picpic
          1. region a:1833-2087 [158032] picpiclink
        3. 3e66 picpic
          automatically matched to 3E66 A:1833-2087
          1. region b:1833-2087 [158033] picpiclink
        4. 3e9p picpic
          automatically matched to 3E66 A:1833-2087
          1. region a:1833-2087 [158070] picpiclink
        5. 3e9p picpic
          automatically matched to 3E66 A:1833-2087
          1. region b:1833-2087 [158071] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk