Structural Classification of Proteins
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Fold: MurD-like peptide ligases, peptide-binding domain

3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: MurD-like peptide ligases, peptide-binding domain [53243]
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest

Superfamilies:

  1. MurD-like peptide ligases, peptide-binding domain [53244] (2)
    link to SUPERFAMILY database - Superfamily
    1. MurCDEF C-terminal domain [53245] (5)
      1. UDP-N-acetylmuramate-alanine ligase MurC [82452]
        1. Thermotoga maritima [TaxId: 2336] [82453] (1)
          TM0231
          1. 1j6u picpicxrefxref
            structural genomics
            complexed with mse
            1. region a:296-446 [77095] picpiclink
        2. Haemophilus influenzae [TaxId: 727] [89727] (4)
          1. 1p3d picpicxrefxref
            complexed with anp, mn, mse, uma
            1. region a:322-473 [87729] picpiclink
            2. region b:322-473 [87732] picpiclink
          2. 1p31 picpicxrefxref
            complexed with epu, mg, mse
            1. region a:322-474 [87723] picpiclink
            2. region b:322-473 [87726] picpiclink
          3. 1gqy picpicxrefxref
            complexed with acp, mg
            1. region a:322-475 [83306] picpiclink
            2. region b:322-474 [83309] picpiclink
          4. 1gqq picpicxrefxref
            1. region a:322-475 [83300] picpiclink
            2. region b:322-475 [83303] picpiclink
      2. UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53246]
        1. Escherichia coli [TaxId: 562] [53247] (11)
          1. 2jfg picpicxrefxref
            automatically matched to d1e0da2
            complexed with adp, so4, uma
            1. region a:298-437 [138307] picpiclink
          2. 2uag picpicxrefxref
            complexed with adp, mg, uma
            1. region a:298-437 [33951] picpiclink
          3. 4uag picpicxrefxref
            complexed with so4, uag, unx
            1. region a:298-437 [33952] picpiclink
          4. 3uag picpicxrefxref
            complexed with adp, epe, mn, uma
            1. region a:298-437 [33953] picpiclink
          5. 2jff picpicxrefxref
            automatically matched to d1e0da2
            complexed with lk2, so4
            1. region a:298-437 [138304] picpiclink
          6. 2uup picpicxrefxref
            automatically matched to d1e0da2
            complexed with lk4, so4
            1. region a:298-437 [152201] picpiclink
          7. 1uag picpicxrefxref
            complexed with so4, uma
            1. region a:298-437 [33954] picpiclink
          8. 1eeh picpicxrefxref
            complexed with uma
            1. region a:298-437 [33955] picpiclink
          9. 2jfh picpicxrefxref
            automatically matched to d1e0da2
            complexed with lk1, so4
            1. region a:298-437 [138310] picpiclink
          10. 2uuo picpicxrefxref
            automatically matched to d1e0da2
            complexed with lk3, so4
            1. region a:298-437 [152198] picpiclink
          11. 1e0d picpicxrefxref
            complexed with so4
            1. region a:298-437 [33956] picpiclink
      3. UDP-N-acetylmuramyl tripeptide synthetase MurE [64107]
        1. Escherichia coli [TaxId: 562] [64108] (1)
          1. 1e8c picpicxrefxref
            complexed with api, cl, uag
            1. region a:338-497 [59378] picpiclink
            2. region b:338-498 [59381] picpiclink
      4. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [53248]
        1. Escherichia coli [TaxId: 562] [53249] (1)
          1. 1gg4 picpicxrefxref
            1. region a:313-447 [33957] picpiclink
            2. region b:813-947 [33958] picpiclink
    2. Folylpolyglutamate synthetase, C-terminal domain [53250] (2)
      1. Folylpolyglutamate synthetase, C-terminal domain [53251]
        1. Lactobacillus casei [TaxId: 1582] [53252] (7)
          1. 2gc6 picpicxref
            automatically matched to d1fgs_1
            complexed with lcx, so4; mutant
            1. region a:297-425 [134952] picpiclink
          2. 2gc5 picpicxref
            automatically matched to d1fgs_1
            complexed with lcx, so4; mutant
            1. region a:297-425 [134950] picpiclink
          3. 1jbw picpicxref
            complexed with acq, mg, tmf
            1. region a:297-425 [62860] picpiclink
          4. 1jbv picpicxref
            complexed with acp, mg
            1. region a:297-425 [62858] picpiclink
          5. 2gcb picpicxref
            automatically matched to d1fgs_1
            mutant
            1. region a:297-425 [134975] picpiclink
          6. 2gca picpicxref
            automatically matched to d1fgs_1
            1. region a:297-425 [134973] picpiclink
          7. 1fgs picpicxref
            complexed with mg, pop
            1. region a:297-425 [33959] picpiclink
        2. Thermotoga maritima [TaxId: 2336] [102532] (1)
          TM0166
          1. 1o5z picpicxref
            structural genomics
            complexed with cl, so4, unl
            1. region a:294-430 [92530] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk