Structural Classification of Proteins
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Superfamily: MurD-like peptide ligases, peptide-binding domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: MurD-like peptide ligases, peptide-binding domain [53243]
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 126345; strand 1 is antiparallel to the rest
  4. Superfamily: MurD-like peptide ligases, peptide-binding domain [53244]
    link to SUPERFAMILY database - Superfamily

Families:

  1. MurCDEF C-terminal domain [53245] (5)
    1. UDP-N-acetylmuramate-alanine ligase MurC [82452]
      1. Thermotoga maritima [TaxId: 2336] [82453] (1)
        TM0231
        1. 1j6u picpicxrefxref
          structural genomics
          complexed with mse
          1. region a:296-446 [77095] picpiclink
      2. Haemophilus influenzae [TaxId: 727] [89727] (4)
        1. 1p3d picpicxrefxref
          complexed with anp, mn, mse, uma
          1. region a:322-473 [87729] picpiclink
          2. region b:322-473 [87732] picpiclink
        2. 1p31 picpicxrefxref
          complexed with epu, mg, mse
          1. region a:322-474 [87723] picpiclink
          2. region b:322-473 [87726] picpiclink
        3. 1gqy picpicxrefxref
          complexed with acp, mg
          1. region a:322-475 [83306] picpiclink
          2. region b:322-474 [83309] picpiclink
        4. 1gqq picpicxrefxref
          1. region a:322-475 [83300] picpiclink
          2. region b:322-475 [83303] picpiclink
    2. UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD [53246]
      1. Escherichia coli [TaxId: 562] [53247] (11)
        1. 2jfg picpicxrefxref
          automatically matched to d1e0da2
          complexed with adp, so4, uma
          1. region a:298-437 [138307] picpiclink
        2. 2uag picpicxrefxref
          complexed with adp, mg, uma
          1. region a:298-437 [33951] picpiclink
        3. 4uag picpicxrefxref
          complexed with so4, uag, unx
          1. region a:298-437 [33952] picpiclink
        4. 3uag picpicxrefxref
          complexed with adp, epe, mn, uma
          1. region a:298-437 [33953] picpiclink
        5. 2jff picpicxrefxref
          automatically matched to d1e0da2
          complexed with lk2, so4
          1. region a:298-437 [138304] picpiclink
        6. 2uup picpicxrefxref
          automatically matched to d1e0da2
          complexed with lk4, so4
          1. region a:298-437 [152201] picpiclink
        7. 1uag picpicxrefxref
          complexed with so4, uma
          1. region a:298-437 [33954] picpiclink
        8. 1eeh picpicxrefxref
          complexed with uma
          1. region a:298-437 [33955] picpiclink
        9. 2jfh picpicxrefxref
          automatically matched to d1e0da2
          complexed with lk1, so4
          1. region a:298-437 [138310] picpiclink
        10. 2uuo picpicxrefxref
          automatically matched to d1e0da2
          complexed with lk3, so4
          1. region a:298-437 [152198] picpiclink
        11. 1e0d picpicxrefxref
          complexed with so4
          1. region a:298-437 [33956] picpiclink
    3. UDP-N-acetylmuramyl tripeptide synthetase MurE [64107]
      1. Escherichia coli [TaxId: 562] [64108] (1)
        1. 1e8c picpicxrefxref
          complexed with api, cl, uag
          1. region a:338-497 [59378] picpiclink
          2. region b:338-498 [59381] picpiclink
    4. UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF [53248]
      1. Escherichia coli [TaxId: 562] [53249] (1)
        1. 1gg4 picpicxrefxref
          1. region a:313-447 [33957] picpiclink
          2. region b:813-947 [33958] picpiclink
  2. Folylpolyglutamate synthetase, C-terminal domain [53250] (2)
    1. Folylpolyglutamate synthetase, C-terminal domain [53251]
      1. Lactobacillus casei [TaxId: 1582] [53252] (7)
        1. 2gc6 picpicxref
          automatically matched to d1fgs_1
          complexed with lcx, so4; mutant
          1. region a:297-425 [134952] picpiclink
        2. 2gc5 picpicxref
          automatically matched to d1fgs_1
          complexed with lcx, so4; mutant
          1. region a:297-425 [134950] picpiclink
        3. 1jbw picpicxref
          complexed with acq, mg, tmf
          1. region a:297-425 [62860] picpiclink
        4. 1jbv picpicxref
          complexed with acp, mg
          1. region a:297-425 [62858] picpiclink
        5. 2gcb picpicxref
          automatically matched to d1fgs_1
          mutant
          1. region a:297-425 [134975] picpiclink
        6. 2gca picpicxref
          automatically matched to d1fgs_1
          1. region a:297-425 [134973] picpiclink
        7. 1fgs picpicxref
          complexed with mg, pop
          1. region a:297-425 [33959] picpiclink
      2. Thermotoga maritima [TaxId: 2336] [102532] (1)
        TM0166
        1. 1o5z picpicxref
          structural genomics
          complexed with cl, so4, unl
          1. region a:294-430 [92530] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk