Structural Classification of Proteins

Fold: Ferredoxin-like

: alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamilies:

4Fe-4S ferredoxins [54862] (6)
uperfamily
1. Short-chain ferredoxins [54863] (5)
  contains two 4Fe-4S clusters
  1. Ferredoxin II [54864]
    1. Peptostreptococcus asaccharolyticus [TaxId: 1258] [54866] (1)
      1. 1dur
        complexed with fs4
        
        chain a [38943]
    2. Clostridium acidurici [TaxId: 1556] [54867] (3)
      1. 2fdn
        complexed with fs4
        
        chain a [38944]
      2. 1fca
        complexed with fs4
        
        chain a [38945]
      3. 1fdn
        complexed with fs4
        
        chain a [38946]
    3. Clostridium pasteurianum [TaxId: 1501] [54868] (1)
      1. 1clf
        complexed with fs4
        
        chain a [38947]
    4. Chromatium vinosum [TaxId: 1049] [54869] (1)
      1. 1blu
        complexed with fs4
        
        chain a [38948]
    5. Thauera aromatica [TaxId: 59405] [102954] (1)
      1. 1rgv
        complexed with fs4
        
        chain a [97454]
2. 7-Fe ferredoxin [54870] (5)
  has C-terminal extension to the common fold
  1. Ferredoxin [54871]
    1. Azotobacter vinelandii [TaxId: 354] [54872] (32)
      1. 7fd1
        complexed with fs3, fs4
        
        chain a [38953]
      2. 6fd1
        complexed with fs3, fs4
        
        chain a [38949]
      3. 6fdr
        complexed with fs3, fs4
        
        chain a [38954]
      4. 7fdr
        complexed with fs3, fs4
        
        chain a [38955]
      5. 1pc4
        complexed with f3s, fs4; mutant
        
        chain a [94428]
      6. 1f5b
        complexed with fs3, fs4; mutant
        
        chain a [38956]
      7. 1g3o
        complexed with fs3, fs4; mutant
        
        chain a [38959]
      8. 1d3w
        complexed with fs3, fs4; mutant
        
        chain a [38957]
      9. 1f5c
        complexed with fs3, fs4, so4; mutant
        
        chain a [38958]
      10. 1pc5
        complexed with f3s, fs4; mutant
        
        chain a [94429]
      11. 1fdd
        complexed with fs3, fs4; mutant
        
        chain a [38960]
      12. 5fd1
        complexed with fs3, fs4
        
        chain a [38950]
      13. 1g6b
        complexed with fs3, fs4; mutant
        
        chain a [38963]
      14. 2fd2
        complexed with fs3, fs4; mutant
        
        chain a [38961]
      15. 1fd2
        complexed with fs3, fs4; mutant
        
        chain a [38962]
      16. 1fda
        complexed with fs3, fs4
        
        chain a [38951]
      17. 1b0t
        complexed with fs4; mutant
        
        chain a [38965]
      18. 1a6l
        complexed with fs3, fs4; mutant
        
        chain a [38966]
      19. 1fer
        complexed with f3s, f4s
        
        chain a [38952]
      20. 1fri
        complexed with fs3, fs4; mutant
        
        chain a [38964]
      21. 1frk
        complexed with fs3, fs4; mutant
        
        chain a [38967]
      22. 1ff2
        complexed with fs3, fs4; mutant
        
        chain a [38968]
      23. 1frj
        complexed with fs3, fs4; mutant
        
        chain a [38969]
      24. 1fdb
        complexed with fs3, fs4
        
        chain a [38970]
      25. 1axq
        complexed with fs3, fs4
        
        chain a [38971]
      26. 1frm
        complexed with fs3, fs4; mutant
        
        chain a [38973]
      27. 1frh
        complexed with fs3, fs4; mutant
        
        chain a [38972]
      28. 1ftc
        complexed with fs3, fs4; mutant
        
        chain a [38974]
        chain b [38975]
      29. 1gao
        complexed with f3s, fs4; mutant
        
        chain a [38977]
        chain b [38978]
        chain c [38979]
        chain d [38980]
      30. 1frl
        complexed with fs3, fs4; mutant
        
        chain a [38976]
      31. 1frx
        complexed with fs3, fs4; mutant
        
        chain a [38981]
      32. 1b0v
        
        chain a [38982]
        chain b [38983]
        chain c [38984]
        chain d [38985]
    2. Bacillus schlegelii [TaxId: 1484] [54873] (4)
      1. 1bc6
        complexed with fs3, fs4
        
        chain a [38986]
      2. 1bd6
        complexed with fs3, fs4
        
        chain a [38987]
      3. 1bwe
        artificial Fe8S8 ferredoxin
        complexed with fs4; mutant
        
        chain a [38988]
      4. 1bqx
        artificial Fe8S8 ferredoxin
        complexed with fs4; mutant
        
        chain a [38989]
    3. Thermus thermophilus [TaxId: 274] [69725] (1)
      1. 1h98
        complexed with fs3, fs4
        
        chain a [65743]
  2. Photosystem I iron-sulfur protein PsaC [64272]
    1. Synechococcus elongatus [TaxId: 32046] [64273] (1)
      1. 1jb0
        complexed with bcr, ca, cl1, cl2, fs4, lhg, lmg, pqn
        
        chain c [62822]
    2. Synechococcus sp. pcc 7002 [TaxId: 32049] [75426] (1)
      1. 1k0t
        complexed with fs4
        
        chain a [71976]
3. Archaeal ferredoxins [54874] (1)
  1. Ferredoxin [54875]
    the N-terminal extension to the common fold forms a part of a Zn-binding site
    1. Archaeon Sulfolobus sp. [TaxId: 2288] [54876] (1)
      1. 1xer
        complexed with fs3, mlz, zn
        
        chain a [38990]
4. Single 4Fe-4S cluster ferredoxin [54877] (5)
  contains only one 4Fe-4S cluster
  1. Ferredoxin A [54878]
    1. Thermotoga maritima [TaxId: 2336] [54879] (2)
      1. 1vjw
        complexed with fs4
        
        chain a [38991]
      2. 1rof
        complexed with fs4
        
        chain a [38992]
  2. Ferredoxin I [54880]
    1. Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873] [54881] (3)
      1. 1fxr
        complexed with fs4, so4
        
        chain a [38993]
        chain b [38994]
      2. 1dfd
        complexed with fs4
        
        chain a [38995]
      3. 1dax
        complexed with fs4
        
        chain a [38996]
    2. Desulfovibrio gigas [TaxId: 879] [54865] (2)
      1. 1fxd
        complexed with cs, f3s
        
        chain a [38941]
      2. 1f2g
        complexed with fs3
        
        chain a [38942]
  3. Ferredoxin [54882]
    1. Bacillus thermoproteolyticus [TaxId: 1427] [54883] (6)
      1. 1iqz
        complexed with fs4, sul
        
        chain a [66281]
      2. 1ir0
        complexed with fs4, sul
        
        chain a [66282]
      3. 1wtf
        automatically matched to d1iqza_
        complexed with coa, f3s, so4
        
        region a:1-81 [121258]
      4. 1wtf
        automatically matched to d1iqza_
        complexed with coa, f3s, so4
        
        region b:1-81 [121259]
      5. 1wtf
        automatically matched to d1iqza_
        complexed with coa, f3s, so4
        
        region c:1-81 [121260]
      6. 1wtf
        automatically matched to d1iqza_
        complexed with coa, f3s, so4
        
        region d:1-81 [121261]
  4. Fe3S4-ferredoxin PF1909 [110946]
    1. Pyrococcus furiosus [TaxId: 2261] [110947] (2)
      SQ P29603
      1. 1sj1
        complexed with f3s, nco
        
        chain a [105595]
        chain b [105596]
      2. 1siz
        complexed with 3co, f3s
        
        chain a [105593]
        chain c [105594]
5. Ferredoxin domains from multidomain proteins [54884] (15)
  members of this "family" may be more closely related to other ferredoxins than to each other
  1. Fe-only hydrogenase, second domain [54885]
    1. Clostridium pasteurianum [TaxId: 1501] [54886] (4)
      1. 3c8y
        automatically matched to d1c4aa3
        complexed with fes, gol, hcn, sf4
        
        region a:127-209 [156059]
      2. 1feh
        complexed with fs2, fsa, fsb, fsh, hc1, hc2
        
        region a:127-209 [38998]
      3. 1c4c
        
        region a:127-209 [38999]
      4. 1c4a
        
        region a:127-209 [39000]
  2. Fe-only hydrogenase larger subunit, N-domain [54887]
    1. Desulfovibrio desulfuricans [TaxId: 876] [54888] (1)
      1. 1hfe
        complexed with cmo, cyn, fcy, fe2, fs4, pdt, zn
        
        region l:2-86 [39001]
        region m:2-86 [39002]
  3. Pyruvate-ferredoxin oxidoreductase, PFOR, domain V [54889]
    1. Desulfovibrio africanus [TaxId: 873] [54890] (17)
      1. 2c42
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        
        region a:669-785 [129794]
      2. 2c42
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        
        region b:669-785 [129799]
      3. 2c3m
        automatically matched to d1b0pa5
        complexed with ca, cl, mg, sf4, tpp
        
        region a:669-785 [129744]
      4. 2c3m
        automatically matched to d1b0pa5
        complexed with ca, cl, mg, sf4, tpp
        
        region b:669-785 [129749]
      5. 2c3y
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        
        region a:669-785 [129784]
      6. 2c3y
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        
        region b:669-785 [129789]
      7. 1kek
        complexed with ca, co2, fs4, htl, mg
        
        region a:669-785 [68528]
        region b:669-785 [68533]
      8. 2c3p
        automatically matched to d1b0pa5
        complexed with 1tp, ca, mg, sf4
        
        region a:669-785 [129764]
      9. 2c3p
        automatically matched to d1b0pa5
        complexed with 1tp, ca, mg, sf4
        
        region b:669-785 [129769]
      10. 2uza
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        
        region a:669-785 [152329]
      11. 2uza
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        
        region b:669-785 [152334]
      12. 2c3u
        automatically matched to d1b0pa5
        complexed with 2tp, ca, mg, pyr, sf4
        
        region a:669-785 [129774]
      13. 2c3u
        automatically matched to d1b0pa5
        complexed with 2tp, ca, mg, pyr, sf4
        
        region b:669-785 [129779]
      14. 1b0p
        complexed with ca, fs4, mg, tpp
        
        region a:669-785 [39003]
        region b:669-785 [39004]
      15. 2c3o
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        
        region a:669-785 [129754]
      16. 2c3o
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        
        region b:669-785 [129759]
      17. 2pda
        complexed with ca, fs4, mg, pyr, tpp
        
        region a:669-785 [39005]
        region b:669-785 [39006]
  4. Dihydropyrimidine dehydrogenase, C-terminal domain [54891]
    includes linker from domain 4
    1. Pig (Sus scrofa) [TaxId: 9823] [54892] (5)
      1. 1gte
        complexed with fad, fmn, fs4, iur
        
        region a:845-1017 [70444]
        region b:845-1018 [70449]
        region c:845-1017 [70454]
        region d:845-1019 [70459]
      2. 1h7w
        complexed with fad, fmn, fs4
        
        region a:845-1017 [39007]
        region b:845-1018 [39008]
        region c:845-1017 [39009]
        region d:845-1019 [39010]
      3. 1h7x
        complexed with fad, fmn, fs4, ndp, urf; mutant
        
        region a:845-1017 [39011]
        region b:845-1020 [39012]
        region c:845-1020 [39013]
        region d:845-1020 [39014]
      4. 1gth
        complexed with fad, fmn, fs4, idh, iur, ndp, ura
        
        region a:845-1020 [70487]
        region b:845-1020 [70492]
        region c:845-1020 [70497]
        region d:845-1020 [70502]
      5. 1gt8
        complexed with fad, fmn, fs4, ndp, uaa
        
        region a:845-1020 [70422]
        region b:845-1020 [70427]
        region c:845-1020 [70432]
        region d:845-1020 [70437]
  5. Adenylylsulfate reductase B subunit [69726]
    includes N-terminal partly folded tail
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [69727] (10)
      1. 1jnr
        complexed with fad, fs4, gol
        
        chain b [66969]
        chain d [66973]
      2. 2fjb
        automatically matched to d1jnrb_
        complexed with amp, na, sf4, sfd
        
        region b:702-850 [133557]
      3. 2fjb
        automatically matched to d1jnrb_
        complexed with amp, na, sf4, sfd
        
        region d:2702-2850 [133558]
      4. 2fje
        automatically matched to d1jnrb_
        complexed with fad, sf4
        
        region b:702-850 [133577]
      5. 2fje
        automatically matched to d1jnrb_
        complexed with fad, sf4
        
        region d:2702-2850 [133578]
      6. 2fjd
        automatically matched to d1jnrb_
        complexed with sf4, sfd
        
        region b:702-850 [133575]
      7. 2fjd
        automatically matched to d1jnrb_
        complexed with sf4, sfd
        
        region d:2702-2850 [133576]
      8. 2fja
        automatically matched to d1jnrb_
        complexed with adx, fad, sf4
        
        region b:702-850 [133555]
      9. 2fja
        automatically matched to d1jnrb_
        complexed with adx, fad, sf4
        
        region d:2702-2850 [133556]
      10. 1jnz
        complexed with fad, fs4, so3
        
        chain b [71769]
        chain d [71773]
  6. Formate dehydrogenase N, iron-sulfur (beta) subunit [75427]
    1. Escherichia coli [TaxId: 562] [75428] (2)
      1. 1kqf
        complexed with 6mo, cdl, cse, fs4, hem, mgd
        
        region b:2-245 [75900]
      2. 1kqg
        complexed with 6mo, cdl, cse, fs4, hem, hq, mgd
        
        region b:2-245 [75902]
  7. Tungsten containing formate dehydrogenase, small subunit [82664]
    1. Desulfovibrio gigas [TaxId: 879] [82665] (1)
      1. 1h0h
        complexed with 2md, ca, cse, epe, fs4, mgd, s, w
        
        chain b [76437]
        chain l [76440]
  8. Respiratory nitrate reductase 1 beta chain [102955]
    1. Escherichia coli [TaxId: 562] [102956] (7)
      SQ P11349
      1. 1y5i
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4; mutant
        
        region b:1-509 [122641]
      2. 1q16
        complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4
        
        chain b [95548]
      3. 1r27
        complexed with f3s, fs4, mgd, mo
        
        chain b [96850]
        chain d [96853]
      4. 1y4z
        complexed with 6mo, aga, f3s, hem, md1, pci, sf4; mutant
        
        region b:1-509 [144594]
      5. 1siw
        complexed with 3ph, f3s, gdp, hem, sf4
        
        chain b [105591]
      6. 1y5l
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, f3s, hem, md1, sf4; mutant
        
        region b:1-509 [122644]
      7. 1y5n
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, aga, f3s, hem, md1, pci, sf4; mutant
        
        region b:1-509 [122649]
  9. Transhydroxylase beta subunit, BthL, N-terminal domain [110948]
    1. Pelobacter acidigallici [TaxId: 35816] [110949] (6)
      SQ P80564
      1. 1vlf
        complexed with 4mo, btt, ca, fs4, mgd
        
        region n:1-195 [108795]
        region p:1-195 [108799]
        region r:1-195 [108803]
        region t:1-195 [108807]
        region v:1-195 [108811]
        region x:1-195 [108815]
      2. 1ti6
        complexed with 4mo, btt, ca, fs4, mgd
        
        region b:1-195 [106977]
        region d:1-195 [106981]
        region f:1-195 [106985]
        region h:1-195 [106989]
        region j:1-195 [106993]
        region l:1-195 [106997]
      3. 1vle
        complexed with 4mo, ca, fs4, mgd, pyg
        
        region n:1-195 [108771]
        region p:1-195 [108775]
        region r:1-195 [108779]
        region t:1-195 [108783]
        region v:1-195 [108787]
        region x:1-195 [108791]
      4. 1ti4
        complexed with 4mo, ca, fs4, mgd, pyg
        
        region b:1-195 [106953]
        region d:1-195 [106957]
        region f:1-195 [106961]
        region h:1-195 [106965]
        region j:1-195 [106969]
        region l:1-195 [106973]
      5. 1vld
        complexed with 4mo, act, ca, fs4, mgd
        
        region n:1-195 [108747]
        region p:1-195 [108751]
        region r:1-195 [108755]
        region t:1-195 [108759]
        region v:1-195 [108763]
        region x:1-195 [108767]
      6. 1ti2
        complexed with 4mo, act, ca, fs4, mgd
        
        region b:1-195 [106929]
        region d:1-195 [106933]
        region f:1-195 [106937]
        region h:1-195 [106941]
        region j:1-195 [106945]
        region l:1-195 [106949]
  10. NADH-quinone oxidoreductase chain 9, Nqo9 [143252]
    1. Thermus thermophilus [TaxId: 274] [143253] (4)
      SQ Q56224 26-179
      1. 2fug
        complexed with fes, fmn, sf4
        
        region 9:26-179 [134133]
      2. 2fug
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        
        region g:26-179 [134145]
      3. 2fug
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        
        region p:26-179 [134158]
      4. 2fug
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        
        region y:26-179 [134171]
  11. NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 [143254]
    1. Thermus thermophilus [TaxId: 274] [143255] (4)
      SQ Q56223 96-246
      1. 2fug
        complexed with fes, fmn, sf4
        
        region 3:96-246 [134128]
      2. 2fug
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        
        region c:96-246 [134141]
      3. 2fug
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        
        region l:96-246 [134154]
      4. 2fug
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        
        region u:96-246 [134167]
  12. DsrB insert domain [160277]
    1. Desulfovibrio vulgaris [TaxId: 881] [160278] (2)
      SQ P45575 209-277
      1. 2v4j
        complexed with sf4, so3, srm
        
        region b:209-277 [152559]
      2. 2v4j
        automatically matched to 2V4J B:209-277
        complexed with sf4, so3, srm
        
        region e:209-277 [152566]
    2. Archaeoglobus fulgidus [TaxId: 2234] [160279] (2)
      SQ Q59110 197-261
      1. 3c7b
        complexed with sf4, so3, srm
        
        region b:197-261 [156004]
      2. 3c7b
        automatically matched to 3C7B B:197-261
        complexed with sf4, so3, srm
        
        region e:197-261 [156010]
  13. DsrA insert domain [160280]
    1. Desulfovibrio vulgaris [TaxId: 881] [160281] (2)
      SQ P45574 242-322
      1. 2v4j
        complexed with sf4, so3, srm
        
        region a:242-322 [152556]
      2. 2v4j
        automatically matched to 2V4J A:242-322
        complexed with sf4, so3, srm
        
        region d:242-322 [152563]
    2. Archaeoglobus fulgidus [TaxId: 2234] [160282] (2)
      SQ Q59109 240-305
      1. 3c7b
        complexed with sf4, so3, srm
        
        region a:239-304 [156001]
      2. 3c7b
        automatically matched to 3C7B A:239-304
        complexed with sf4, so3, srm
        
        region d:239-304 [156007]
6. ETF-QO domain-like [143256] (1)
  Pfam 05187; Electron transfer flavoprotein-ubiquinone oxidoreductase; contains single Fe4-S4 cluster
  1. Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO [143257]
    1. Pig (Sus scrofa) [TaxId: 9823] [143258] (4)
      SQ P55931 506-607
      1. 2gmh
        complexed with bhg, edo, fad, na, sf4, uq5
        
        region a:483-584 [135377]
      2. 2gmh
        automatically matched to 2GMH A:483-584
        complexed with bhg, edo, fad, na, sf4, uq5
        
        region b:483-584 [135380]
      3. 2gmj
        automatically matched to 2GMH A:483-584
        complexed with fad, sf4, tbu
        
        region a:483-584 [135385]
      4. 2gmj
        automatically matched to 2GMH A:483-584
        complexed with fad, sf4, tbu
        
        region b:483-584 [135388]
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain [54893] (1)
uperfamily
1. Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain [54894] (2)
  1. Aspartate carbamoyltransferase [54895]
    1. Escherichia coli [TaxId: 562] [54896] (59)
      SQ P00478
      1. 2fzc
        automatically matched to d1d09b1
        complexed with ctp, eop, zn
        
        region b:2-100 [134426]
      2. 2fzc
        automatically matched to d1d09b1
        complexed with ctp, eop, zn
        
        region d:2-100 [134430]
      3. 2air
        automatically matched to d1d09b1
        complexed with al0, cp, zn
        
        region b:1-100 [126832]
      4. 2air
        automatically matched to d1d09b1
        complexed with al0, cp, zn
        
        region h:1-100 [126836]
      5. 2h3e
        automatically matched to d1d09b1
        complexed with 6pr, zn
        
        region b:9-100 [136038]
      6. 2h3e
        automatically matched to d1d09b1
        complexed with 6pr, zn
        
        region d:9-100 [136042]
      7. 1za1
        automatically matched to d1d09b1
        complexed with ctp, zn
        
        region b:2-100 [124777]
      8. 1za1
        automatically matched to d1d09b1
        complexed with ctp, zn
        
        region d:2-100 [124781]
      9. 2fzg
        automatically matched to d1d09b1
        complexed with ctp, eob, zn
        
        region b:2-100 [134441]
      10. 2fzg
        automatically matched to d1d09b1
        complexed with ctp, eob, zn
        
        region d:2-100 [134445]
      11. 1d09
        
        region b:1-100 [39015]
        region d:1-100 [39016]
      12. 1q95
        complexed with pal, zn
        
        region g:1-100 [104577]
        region h:1-100 [104579]
        region i:1-100 [104581]
        region j:1-100 [104583]
        region k:1-100 [104585]
        region l:1-100 [104587]
      13. 2qgf
        automatically matched to d1d09b1
        complexed with zn; mutant
        
        region b:1-100 [150775]
      14. 2qgf
        automatically matched to d1d09b1
        complexed with zn; mutant
        
        region d:1-100 [150779]
      15. 1r0c
        complexed with ips, ncd, zn
        
        region b:1-100 [104709]
        region h:1-100 [104713]
      16. 1f1b
        complexed with pal, zn; mutant
        
        region b:1-100 [39017]
        region d:1-100 [39018]
      17. 5at1
        complexed with ctp, zn
        
        region b:8-100 [39021]
        region d:8-100 [39022]
      18. 1xjw
        automatically matched to d1d09b1
        complexed with pal, zn; mutant
        
        region b:1-100 [122043]
      19. 1xjw
        automatically matched to d1d09b1
        complexed with pal, zn; mutant
        
        region d:1-100 [122047]
      20. 2ipo
        automatically matched to d1d09b1
        complexed with 1ip, mae, mpd, zn
        
        region b:8-100 [147764]
      21. 2ipo
        automatically matched to d1d09b1
        complexed with 1ip, mae, mpd, zn
        
        region d:8-100 [147768]
      22. 4at1
        complexed with atp, zn
        
        region b:8-100 [39019]
        region d:8-100 [39020]
      23. 1rai
        complexed with ctp, zn
        
        region b:1-100 [39029]
        region d:8-100 [39030]
      24. 1nbe
        complexed with mlt, zn; mutant
        
        region b:1-100 [39041]
        region d:1-100 [39042]
      25. 1raf
        complexed with ctp, zn
        
        region b:1-100 [39031]
        region d:1-100 [39032]
      26. 8atc
        complexed with pal, zn
        
        region b:8-100 [39027]
        region d:8-100 [39028]
      27. 6at1
        complexed with zn
        
        region b:8-100 [39023]
        region d:8-100 [39024]
      28. 1rah
        complexed with ctp, zn
        
        region b:1-100 [39037]
        region d:1-100 [39038]
      29. 1rac
        complexed with ctp, zn
        
        region b:1-100 [39039]
        region d:1-100 [39040]
      30. 1rae
        complexed with ctp, zn
        
        region b:1-100 [39045]
        region d:1-100 [39046]
      31. 1rag
        complexed with ctp, zn
        
        region b:1-100 [39025]
        region d:1-100 [39026]
      32. 1rad
        complexed with ctp, zn
        
        region b:1-100 [39043]
        region d:1-100 [39044]
      33. 1raa
        complexed with ctp, zn
        
        region b:1-100 [39033]
        region d:1-100 [39034]
      34. 1rab
        complexed with ctp, zn
        
        region b:1-100 [39035]
        region d:1-100 [39036]
      35. 1tug
        complexed with ctp, mli, pct, zn; mutant
        
        region b:1-100 [107340]
        region d:1-100 [107343]
      36. 1i5o
        complexed with pal, zn; mutant
        
        region b:1-100 [61811]
        region d:1-100 [61815]
      37. 1at1
        complexed with mal, pam, zn
        
        region b:8-100 [39049]
        region d:8-100 [39050]
      38. 8at1
        complexed with ctp, mal, pam, zn
        
        region b:8-100 [39047]
        region d:8-100 [39048]
      39. 2at1
        complexed with mal, pam, zn
        
        region b:8-100 [39051]
        region d:8-100 [39052]
      40. 7at1
        complexed with atp, mal, pam, zn
        
        region b:8-100 [39053]
        region d:8-100 [39054]
      41. 1acm
        complexed with pal, zn; mutant
        
        region b:8-100 [39055]
        region d:8-100 [39056]
      42. 2hse
        automatically matched to d1d09b1
        complexed with asi, pct, po4, zn
        
        region b:8-100 [147383]
      43. 2hse
        automatically matched to d1d09b1
        complexed with asi, pct, po4, zn
        
        region d:8-100 [147387]
      44. 2fzk
        automatically matched to d1d09b1
        complexed with ctp, eoz, zn
        
        region b:2-100 [134451]
      45. 2fzk
        automatically matched to d1d09b1
        complexed with ctp, eoz, zn
        
        region d:2-100 [134455]
      46. 9atc
        complexed with zn; mutant
        
        region b:8-100 [39057]
      47. 3at1
        complexed with pam, zn
        
        region b:8-100 [39058]
        region d:8-100 [39059]
      48. 1tth
        complexed with pal, zn; mutant
        
        region b:1-100 [107298]
        region d:1-100 [107301]
      49. 1tu0
        complexed with pct, zn; mutant
        
        region b:1-100 [107311]
        region d:1-100 [107314]
      50. 1r0b
        complexed with flc, ips, zn
        
        region g:1-100 [104695]
        region h:1-100 [104697]
        region i:1-100 [104699]
        region j:1-100 [104701]
        region k:1-100 [104703]
        region l:1-100 [104705]
      51. 1ezz
        complexed with zn; mutant
        
        region b:1-100 [39060]
        region d:1-100 [39061]
      52. 1sku
        complexed with mli, zn; mutant
        
        region b:6-100 [98904]
        region d:6-100 [98908]
      53. 2qg9
        automatically matched to d1d09b1
        complexed with zn; mutant
        
        region b:1-100 [150759]
      54. 3d7s
        automatically matched to d1d09b1
        complexed with zn
        
        region b:8-100 [157426]
      55. 3d7s
        automatically matched to d1d09b1
        complexed with zn
        
        region d:8-100 [157430]
      56. 2qg9
        automatically matched to d1d09b1
        complexed with zn; mutant
        
        region d:1-100 [150763]
      57. 2a0f
        automatically matched to d1d09b1
        complexed with pct, zn; mutant
        
        region b:8-100 [125948]
      58. 2a0f
        automatically matched to d1d09b1
        complexed with pct, zn; mutant
        
        region d:8-100 [125952]
      59. 2atc
        complexed with zn
        
        region b:1-100 [39062]
    2. Archaeon Sulfolobus acidocaldarius [TaxId: 2285] [110950] (2)
      1. 1pg5
        complexed with zn
        
        region b:11-104 [104148]
      2. 2be9
        automatically matched to d1pg5b1
        complexed with ctp, so4, zn
        
        region b:11-104 [128373]
Protease propeptides/inhibitors [54897] (3)
uperfamily
1. Pancreatic carboxypeptidase, activation domain [54898] (6)
  1. Procarboxypeptidase A [54899]
    1. Pig (Sus scrofa) [TaxId: 9823] [54900] (1)
      1. 1pca
        complexed with cit, zn
        
        region a:4a-99a [39063]
    2. Cow (Bos taurus) [TaxId: 9913] [54901] (1)
      1. 1pyt
        complexed with ca, zn
        
        chain a [39064]
    3. Human (Homo sapiens) [TaxId: 9606] [54902] (4)
      procarboxypeptidase A2
      1. 1aye
        complexed with zn
        
        region a:4a-99a [39065]
      2. 2boa
        Procarboxypeptidase A4
        complexed with gol, nag, zn
        
        region a:4-99 [128904]
      3. 2boa
        automatically matched to 2BOA A:4-99
        complexed with gol, nag, zn
        
        region b:4-99 [128906]
      4. 1o6x
        
        chain a [81105]
    4. Cotton bollworm (Helicoverpa armigera) [TaxId: 29058] [75429] (1)
      1. 1jqg
        complexed with zn
        
        region a:4p-100p [71792]
  2. Procarboxypeptidase B [54903]
    1. Pig (Sus scrofa) [TaxId: 9823] [54904] (2)
      1. 1nsa
        complexed with ben, zn
        
        region a:7a-95a [39066]
      2. 1pba
        
        chain a [39067]
    2. Human (Homo sapiens) [TaxId: 9606] [75430] (1)
      1. 1kwm
        complexed with cit, zn
        
        region a:1a-95a [73080]
        region b:1a-95a [73082]
2. Subtilase propeptides/inhibitors [54905] (4)
  decorated with additional structure
  1. Subtilisin prosegment [54906]
    1. Bacillus amyloliquefaciens [TaxId: 1390] [54907] (1)
      1. 1spb
        CASP1
        complexed with na; mutant
        
        chain p [39068]
    2. Bacillus subtilis [TaxId: 1423] [54908] (1)
      1. 1scj
        complexed with ca; mutant
        
        chain b [39069]
  2. Proteinase A inhibitor 1, POIA1 [69728]
    1. Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322] [69729] (2)
      1. 1v5i
        complexed with ca, gol, so4; mutant
        
        region b:1-72 [144406]
      2. 1itp
        
        chain a [66371]
  3. Pro-kumamolisin activation domain [110951]
    1. Bacillus sp. MN-32 [TaxId: 198803] [110952] (1)
      SQ Q8RR56
      1. 1t1e
        complexed with ca
        
        region a:12-190 [106245]
3. Prohormone convertase 1 pro-domain [75431] (1)
  1. Prohormone convertase 1 pro-domain [75432]
    1. Mouse (Mus musculus) [TaxId: 10090] [75433] (1)
      1. 1kn6
        
        chain a [72770]
Dimeric alpha+beta barrel [54909] (23)
dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
uperfamily
1. Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82666] (1)
  1. Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82667]
    1. Streptomyces coelicolor [TaxId: 1902] [82668] (5)
      1. 1lq9
        complexed with pg4
        
        chain a [78129]
        chain b [78130]
      2. 1n5q
        complexed with p6g, tnc
        
        chain a [80035]
        chain b [80036]
      3. 1n5s
        complexed with 1pg, adl
        
        chain a [80039]
        chain b [80040]
      4. 1n5t
        complexed with oal
        
        chain a [80041]
        chain b [80042]
      5. 1n5v
        complexed with nom
        
        chain a [80043]
        chain b [80044]
2. Plant stress-induced protein [89927] (3)
  1. Hypothetical protein AT3G17210.1 [89928]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [89929] (3)
      1. 1q4r
        structural genomics
        complexed with mg
        
        chain a [95823]
      2. 2q3p
        automatically matched to d1q53a_
        complexed with mg
        
        region a:10-112 [139798]
      3. 1q53
        structural genomics
        
        chain a [95858]
        chain b [95859]
  2. Hypothetical protein AT5G22580 [102957]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [102958] (1)
      1. 1rjj
        
        chain a [97569]
        chain b [97570]
  3. Boiling stable protein 1 [110953]
    1. European aspen (Populus tremula) [TaxId: 113636] [110954] (2)
      SQ Q9AR79
      1. 1tr0
        complexed with gol
        
        chain a [107261]
        chain b [107262]
        chain c [107263]
        chain d [107264]
        chain e [107265]
        chain f [107266]
        chain g [107267]
        chain h [107268]
        chain i [107269]
        chain j [107270]
        chain k [107271]
        chain l [107272]
        chain m [107273]
        chain n [107274]
        chain o [107275]
        chain p [107276]
        chain r [107277]
        chain s [107278]
        chain t [107279]
        chain u [107280]
        chain v [107281]
        chain w [107282]
        chain x [107283]
        chain y [107284]
      2. 1si9
        complexed with gol
        
        chain a [105571]
        chain b [105572]
        chain c [105573]
3. PG130-like [102959] (5)
  subfamily of Pfam 03992
  1. Hypothetical protein TT1380 [102960]
    1. Thermus thermophilus [TaxId: 274] [102961] (1)
      1. 1iuj
        structural genomics
        complexed with zn
        
        chain a [90701]
        chain b [90702]
  2. Hypothetical protein PG130 (SAV0165) [110955]
    1. Staphylococcus aureus [TaxId: 1280] [110956] (3)
      SQ Q99X56
      1. 2zdp
        automatically matched to d1sqea_
        complexed with cl, coh
        
        region a:0-108 [154396]
      2. 2zdp
        automatically matched to d1sqea_
        complexed with cl, coh
        
        region b:0-108 [154397]
      3. 1sqe
        Structural genomics target
        
        chain a [105908]
        chain b [105909]
  3. Hypothetical protein BC2969 [110957]
    1. Bacillus cereus [TaxId: 1396] [110958] (1)
      SQ Q81C15
      1. 1tz0
        Structural genomics target
        complexed with edo, fmt
        
        chain a [107463]
        chain b [107464]
        chain c [107465]
  4. Hypothetical protein IsdG [117934]
    1. Staphylococcus aureus [TaxId: 1280] [117935] (1)
      SQ Q8NX62
      1. 1xbw
        Structural genomics target
        
        chain a [115096]
        chain b [115097]
        chain c [115098]
        chain d [115099]
  5. Hypothetical protein YqjZ [160283]
    1. Bacillus subtilis [TaxId: 1423] [160284] (1)
      SQ P54563 3-110
      1. 2go8
        
        region a:3-110 [147144]
4. Hypothetical protein YjcS [102962] (1)
  1. Hypothetical protein YjcS [102963]
    1. Bacillus subtilis [TaxId: 1423] [102964] (1)
      1. 1q8b
        structural genomics; monomeric form?
        
        chain a [96201]
5. YciI-like [102965] (1)
  structural similarity to MLI extends to the active site cavity location
  1. Hypothetical protein HI0828 [102966]
    1. Haemophilus influenzae [TaxId: 727] [102967] (1)
      1. 1mwq
        structural genomics
        complexed with 1pe, cac, cl, peg, zn
        
        chain a [91481]
        chain b [91482]
6. Muconalactone isomerase, MLI [54910] (1)
  decamer: pentamer of dimers
  1. Muconalactone isomerase, MLI [54911]
    1. Pseudomonas putida [TaxId: 303] [54912] (10)
      1. 1mli
        CA-atoms only
        
        chain a [39070]
      2. 1mli
        duplicate of 1MLI
        
        chain b [118555]
      3. 1mli
        duplicate of 1MLI
        
        chain c [118556]
      4. 1mli
        duplicate of 1MLI
        
        chain d [118557]
      5. 1mli
        duplicate of 1MLI
        
        chain e [118558]
      6. 1mli
        duplicate of 1MLI
        
        chain f [118559]
      7. 1mli
        duplicate of 1MLI
        
        chain g [118560]
      8. 1mli
        duplicate of 1MLI
        
        chain h [118561]
      9. 1mli
        duplicate of 1MLI
        
        chain i [118562]
      10. 1mli
        duplicate of 1MLI
        
        chain j [118563]
7. Lrp/AsnC-like transcriptional regulator C-terminal domain [69733] (4)
  octamer: tetramer of dimers
  1. LprA [69734]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [69735] (1)
      1. 1i1g
        
        region a:62-141 [65983]
        region b:62-141 [65985]
  2. Putative transcriptional regulator PH1519 [102968]
    archaeal feast/famine regulatory protein
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102969] (3)
      identical sequence to Pyrococcus sp. ot3 protein
      1. 2cyy
        automatically matched to d1ri7a2
        complexed with ca, gln
        
        region a:65-150 [131029]
      2. 2e1c
        automatically matched to d1ri7a2
        
        region a:85-170 [146626]
      3. 1ri7
        
        region a:85-170 [97505]
  3. Transcriptional regulator LrpC [143259]
    1. Bacillus subtilis [TaxId: 1423] [143260] (8)
      SQ P96582 64-140
      1. 2cfx
        
        region a:64-140 [130396]
      2. 2cfx
        automatically matched to 2CFX A:64-140
        
        region b:64-140 [130398]
      3. 2cfx
        automatically matched to 2CFX A:64-140
        
        region c:64-140 [130400]
      4. 2cfx
        automatically matched to 2CFX A:64-140
        
        region d:64-140 [130402]
      5. 2cfx
        automatically matched to 2CFX A:64-140
        
        region e:64-140 [130404]
      6. 2cfx
        automatically matched to 2CFX A:64-140
        
        region f:64-140 [130406]
      7. 2cfx
        automatically matched to 2CFX A:64-140
        
        region g:64-140 [130408]
      8. 2cfx
        automatically matched to 2CFX A:64-140
        
        region h:64-140 [130410]
  4. Regulatory protein AsnC [143261]
    1. Escherichia coli [TaxId: 562] [143262] (2)
      SQ P0ACI6 67-152
      1. 2cg4
        complexed with asn, mg; mutant
        
        region a:67-152 [130418]
      2. 2cg4
        automatically matched to 2CG4 A:67-152
        complexed with asn, mg; mutant
        
        region b:67-152 [130420]
8. Polyketide synthesis cyclase [110959] (1)
  Pfam 04673
  1. Tetracenomycin polyketide synthesis protein TcmI [110960]
    1. Streptomyces glaucescens [TaxId: 1907] [110961] (1)
      SQ P39890
      1. 1tuw
        complexed with so4
        
        chain a [107346]
9. DGPF domain (Pfam 04946) [110962] (1)
  there is the putative active site cavity in the equivalent location location to the MLI and YciI active sites
  1. Hypothetical protein PA1349 [110963]
    1. Pseudomonas aeruginosa [TaxId: 287] [110964] (1)
      SQ Q9I3Z5
      1. 1s7i
        Structural genomics target
        
        chain a [105353]
10. Chlorite dismutase-like [110965] (2)
  Pfam 06778; duplication: consists of two similar domains; forms a pentamer similar to the MLI decamer
  1. YwfI homologue [110966]
    1. Bacillus stearothermophilus [TaxId: 1422] [110967] (1)
      SQ Q5KUD5 # 98% sequence identity; Geobacillus kaustophilus TaxID:1462
      1. 1t0t
        complexed with mo6, p33
        
        chain v [106229]
        chain w [106230]
        chain x [106231]
        chain y [106232]
        chain z [106233]
  2. Polyketide synthase CurD homologue TTHA1714/TTC1352 [110968]
    1. Thermus thermophilus [TaxId: 274] [110969] (1)
      SQ Q5SHL6
      1. 1vdh
        Structural genomics target
        mutant
        
        chain a [108523]
        chain b [108524]
        chain c [108525]
        chain d [108526]
        chain e [108527]
11. PA3566-like [110970] (5)
  subfamily of Pfam 03992
  1. Hypothetical protein PA3566 [110971]
    1. Pseudomonas aeruginosa [TaxId: 287] [110972] (1)
      SQ Q9HY51
      1. 1x7v
        Structural genomics target
        complexed with so4
        
        chain a [109501]
        chain b [109502]
        chain c [109503]
  2. Hypothetical protein YgiN [117936]
    1. Escherichia coli [TaxId: 562] [117937] (2)
      SQ P0ADU2 P40718
      1. 1tuv
        structural genomics target
        complexed with vk3
        
        chain a [112665]
      2. 1r6y
        Structural genomics target
        
        chain a [111711]
  3. Hypothetical protein Rv0793 [117938]
    1. Mycobacterium tuberculosis [TaxId: 1773] [117939] (1)
      SQ O86332
      1. 1y0h
        Structural genomics target
        complexed with act
        
        chain a [116303]
        chain b [116304]
  4. Hypothetical protein NE2512 [160285]
    1. Nitrosomonas europaea [TaxId: 915] [160286] (4)
      SQ Q82S47 1-100
      1. 2pd1
        complexed with act
        
        region a:1-100 [149387]
      2. 2pd1
        automatically matched to 2PD1 A:1-100
        complexed with act
        
        region b:1-100 [149388]
      3. 2pd1
        automatically matched to 2PD1 A:1-100
        complexed with act
        
        region c:1-100 [149389]
      4. 2pd1
        automatically matched to 2PD1 A:1-100
        complexed with act
        
        region d:1-100 [149390]
  5. Hypothetical protein NE0621 [160287]
    1. Nitrosomonas europaea [TaxId: 915] [160288] (8)
      SQ Q82WP3 1-98
      1. 2omo
        
        region a:1-98 [148871]
      2. 2omo
        automatically matched to 2OMO A:1-98
        
        region b:1-98 [148872]
      3. 2omo
        automatically matched to 2OMO A:1-98
        
        region c:1-98 [148873]
      4. 2omo
        automatically matched to 2OMO A:1-98
        
        region d:1-97 [148874]
      5. 2omo
        automatically matched to 2OMO A:1-98
        
        region e:1-95 [148875]
      6. 2omo
        automatically matched to 2OMO A:1-98
        
        region f:1-94 [148876]
      7. 2omo
        automatically matched to 2OMO A:1-98
        
        region g:1-97 [148877]
      8. 2omo
        automatically matched to 2OMO A:1-98
        
        region h:1-97 [148878]
12. Hypothetical protein YdhR [117940] (1)
  1. Hypothetical protein YdhR [117941]
    1. Escherichia coli [TaxId: 562] [117942] (5)
      SQ P77225
      1. 2hiq
        automatically matched to d1wd6a_
        
        region a:9-104 [136529]
      2. 2hiq
        automatically matched to d1wd6a_
        
        region b:9-104 [136530]
      3. 1wd6
        Structural genomics target
        
        chain a [114525]
      4. 2asy
        
        region a:1-101 [127278]
      5. 2asy
        automatically matched to 2ASY A:1-101
        
        region b:1-101 [127279]
13. NIPSNAP [117943] (2)
  Pfam 07978
  1. Hypothetical protein Atu4242 [117944]
    1. Agrobacterium tumefaciens [TaxId: 358] [117945] (9)
      SQ Q8U857
      1. 1vqs
        structural genomics target
        complexed with mpd, so4
        
        chain a [114019]
        chain b [114020]
        chain c [114021]
        chain d [114022]
        chain e [114023]
      2. 2ap6
        
        region a:1-104 [127111]
      3. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region b:1-104 [127112]
      4. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region c:1-104 [127113]
      5. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region d:1-104 [127114]
      6. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region e:1-104 [127115]
      7. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region f:1-104 [127116]
      8. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region g:1-104 [127117]
      9. 2ap6
        automatically matched to 2AP6 A:1-104
        
        region h:1-104 [127118]
  2. Hypothetical protein Atu5224 [143263]
    1. Agrobacterium tumefaciens [TaxId: 358] [143264] (8)
      SQ Q8UK99 1-104
      1. 1vqy
        complexed with po4
        
        region a:1-104 [120418]
      2. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region b:1-104 [120419]
      3. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region c:1-104 [120420]
      4. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region d:1-104 [120421]
      5. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region e:1-104 [120422]
      6. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region f:1-104 [120423]
      7. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region g:1-104 [120424]
      8. 1vqy
        automatically matched to 1VQY A:1-104
        complexed with po4
        
        region h:1-104 [120425]
14. Dyp-type peroxidase-like [143265] (3)
  Pfam 04261
  1. Hypothetical protein BT1219 [143266]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [143267] (1)
      SQ Q8A8E8 8-316
      1. 2gvk
        complexed with acy, cl, edo, na, unl
        
        region a:8-316 [135782]
  2. Decolorizing peroxidase DyP [143268]
    1. Geotrichum candidum [TaxId: 27317] [143269] (2)
      SQ Q8WZK8 60-498
      species assignment from the UniProt sequence (Id 100%); 2d3q species is Thanatephorus cucumeris
      1. 2d3q
        complexed with hem
        
        region a:4-442 [131214]
      2. 2d3q
        automatically matched to 2D3Q A:4-442
        complexed with hem
        
        region b:4-442 [131215]
  3. Melanin biosynthesis protein TyrA [143270]
    1. Shewanella oneidensis [TaxId: 70863] [143271] (2)
      SQ Q8EIU4 5-311
      1. 2iiz
        automatically matched to 2HAG A:5-311
        complexed with edo, hem, ipa, na
        
        region a:5-310 [137444]
      2. 2hag
        
        region a:5-311 [136287]
15. EthD-like [143272] (1)
  Pfam 07110
  1. Hypothetical protein BH0200 [143273]
    1. Bacillus halodurans [TaxId: 86665] [143274] (2)
      SQ Q9KGB0 4-106
      1. 2ftr
        complexed with cl, gol, unl
        
        region a:4-106 [134077]
      2. 2ftr
        automatically matched to 2FTR A:4-106
        complexed with cl, gol, unl
        
        region b:6-105 [134078]
16. Atu0297-like [143275] (1)
  Pfam 07045; DUF1330
  1. Hypothetical protein Atu0297 [143276]
    1. Agrobacterium tumefaciens [TaxId: 358] [143277] (2)
      SQ Q8UIJ7 1-95
      1. 2fiu
        
        region a:1-95 [133537]
      2. 2fiu
        automatically matched to 2FIU A:1-95
        
        region b:1-95 [133538]
17. SOR-like [143278] (1)
  Pfam 07682; duplication: consists of two similar domains
  1. Sulfur oxygenase reductase SOR [143279]
    1. Acidianus ambivalens [TaxId: 2283] [143280] (1)
      SQ P29082 2-308
      1. 2cb2
        complexed with fe
        
        region a:2-308 [130174]
18. YbaA-like [160289] (1)
  Pfam 07237; DUF1428
  1. Hypothetical protein YbaA [160290]
    1. Shigella flexneri [TaxId: 623] [160291] (2)
      SQ P0AAQ9 1-117
      1. 2okq
        complexed with na
        
        region a:1-117 [148807]
      2. 2okq
        automatically matched to 2OKQ A:1-117
        complexed with na
        
        region b:1-117 [148808]
19. MmlI-like [160292] (1)
  Pfam 09448; Methylmuconolactone methyl-isomerase
  1. Hypothetical protein Reut_A1503 [160293]
    1. Ralstonia eutropha [TaxId: 106590] [160294] (2)
      SQ Q471R3 1-108
      1. 2ifx
        complexed with cl, gol
        
        region a:1-108 [147653]
      2. 2ifx
        automatically matched to 2IFX A:1-108
        complexed with cl, gol
        
        region b:1-107 [147654]
20. Marine metagenome family DABB2 [160295] (1)
  1. Hypothetical protein GOS_3280838 [160296]
    1. environmental samples [160297] (2)
      1. 2od4
        complexed with cl, edo
        
        region a:1-100 [148734]
      2. 2od4
        automatically matched to 2OD4 A:1-100
        complexed with cl, edo
        
        region b:1-100 [148735]
21. YiiL-like [160298] (1)
  Pfam 05336; DUF718
  1. L-rhamnose mutarotase YiiL [160299]
    1. Escherichia coli [TaxId: 562] [160300] (4)
      SQ P32156 1-104
      1. 1x8d
        complexed with rns
        
        region a:1-104 [145855]
      2. 1x8d
        automatically matched to 1X8D A:1-104
        complexed with rns
        
        region b:1-104 [145856]
      3. 1x8d
        automatically matched to 1X8D A:1-104
        complexed with rns
        
        region c:1-104 [145857]
      4. 1x8d
        automatically matched to 1X8D A:1-104
        complexed with rns
        
        region d:1-104 [145858]
22. Marine metagenome family DABB1 [160301] (2)
  1. Hypothetical protein GOS_7213774 [160302]
    1. environmental samples [160303] (6)
      marine metagenome
      1. 2op5
        complexed with edo
        
        region a:4-115 [148954]
      2. 2op5
        automatically matched to 2OP5 A:4-115
        complexed with edo
        
        region b:8-115 [148955]
      3. 2op5
        automatically matched to 2OP5 A:4-115
        complexed with edo
        
        region c:4-115 [148956]
      4. 2op5
        automatically matched to 2OP5 A:4-115
        complexed with edo
        
        region d:8-114 [148957]
      5. 2op5
        automatically matched to 2OP5 A:4-115
        complexed with edo
        
        region e:5-115 [148958]
      6. 2op5
        automatically matched to 2OP5 A:4-115
        complexed with edo
        
        region f:7-114 [148959]
  2. Hypothetical protein GOS_2359375 [160304]
    1. environmental samples [160305] (4)
      marine metagenome
      1. 2od6
        complexed with edo, oha
        
        region a:1-109 [148737]
      2. 2od6
        automatically matched to 2OD6 A:1-109
        complexed with edo, oha
        
        region b:2-109 [148738]
      3. 2od6
        automatically matched to 2OD6 A:1-109
        complexed with edo, oha
        
        region c:3-109 [148739]
      4. 2od6
        automatically matched to 2OD6 A:1-109
        complexed with edo, oha
        
        region d:2-109 [148740]
23. Marine metagenome family DABB3 [160306] (1)
  duplication: consists of two similar domains; forms a pentamer similar to the Chlorite dismutase-like pentamer and the MLI decamer
  1. Uncharacterized protein GOS_2596953 [160307]
    1. environmental samples [160308] (5)
      1. 2pgc
        complexed with cl
        
        region a:1-206 [149457]
      2. 2pgc
        automatically matched to 2PGC A:1-206
        complexed with cl
        
        region b:2-206 [149458]
      3. 2pgc
        automatically matched to 2PGC A:1-206
        complexed with cl
        
        region c:4-206 [149459]
      4. 2pgc
        automatically matched to 2PGC A:1-206
        complexed with cl
        
        region d:2-206 [149460]
      5. 2pgc
        automatically matched to 2PGC A:1-206
        complexed with cl
        
        region e:2-206 [149461]
GlnB-like [54913] (5)
form timeric structures with the orthogonally packed beta-sheets
uperfamily
1. Prokaryotic signal transducing protein [54914] (8)
  1. PII (product of glnB) [54915]
    trimer with orthogonal packing of beta-sheets around the threefold axis
    1. Escherichia coli [TaxId: 562] [54916] (2)
      1. 2pii
        
        chain a [39071]
      2. 1pil
        
        chain a [39072]
    2. Herbaspirillum seropedicae [TaxId: 964] [89930] (1)
      1. 1hwu
        
        chain a [83633]
        chain b [83634]
        chain c [83635]
        chain d [83636]
        chain e [83637]
        chain f [83638]
    3. Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131] [102970] (1)
      1. 1qy7
        complexed with ni, so4; mutant
        
        chain a [96575]
        chain b [96576]
        chain c [96577]
    4. Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId: 1131] [102971] (1)
      1. 1ul3
        complexed with ca, gol
        
        chain a [99534]
        chain b [99535]
        chain c [99536]
        chain d [99537]
    5. Thermus thermophilus [TaxId: 274] [102972] (5)
      SQ P83820
      1. 1vfj
        structural genomics target
        mutant
        
        chain a [113637]
        chain b [113638]
        chain c [113639]
      2. 1v3r
        Structural genomics target
        mutant
        
        chain a [113500]
        chain b [113501]
        chain c [113502]
      3. 1v3s
        Structural genomics target
        complexed with atp; mutant
        
        chain a [113503]
        chain b [113504]
        chain c [113505]
      4. 1v9o
        structural genomics target
        complexed with adp; mutant
        
        chain a [113595]
        chain b [113596]
        chain c [113597]
      5. 1ufl
        structural genomics
        mutant
        
        chain a [99341]
        chain b [99342]
        chain c [99343]
  2. PII-homolog GlnK [54917]
    1. Escherichia coli [TaxId: 562] [54918] (8)
      1. 1gnk
        complexed with so4
        
        chain a [39073]
        chain b [39074]
      2. 2gnk
        complexed with atp
        
        chain a [39075]
      3. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region g:1-112 [138617]
      4. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region h:1-112 [138618]
      5. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region i:1-112 [138619]
      6. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region j:1-112 [138620]
      7. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region k:1-112 [138621]
      8. 2nuu
        automatically matched to d1gnka_
        complexed with adp
        
        region l:1-112 [138622]
    2. Shigella flexneri [TaxId: 623] [160309] (1)
      SQ P0AC58 1-112
      1. 2ns1
        complexed with adp, bog, trs; mutant
        
        region b:1-112 [145694]
  3. Hypothetical protein TTHA0516 [143281]
    1. Thermus thermophilus [TaxId: 274] [143282] (3)
      SQ Q5SKX7 1-100
      1. 2cz4
        complexed with act, cl
        
        region a:1-100 [131035]
      2. 2cz4
        automatically matched to 2CZ4 A:1-100
        complexed with act, cl
        
        region b:1-100 [131036]
      3. 2cz4
        automatically matched to 2CZ4 A:1-100
        complexed with act, cl
        
        region c:1-100 [131037]
2. Divalent ion tolerance proteins CutA (CutA1) [75434] (7)
  1. Cut A1 [89931]
    1. Thermus thermophilus [TaxId: 274] [89932] (2)
      1. 1nza
        structural genomics
        complexed with cl, gol, na, so4
        
        chain a [86444]
      2. 1v6h
        structural genomics
        complexed with so4
        
        chain a [100380]
        chain b [100381]
        chain c [100382]
    2. Escherichia coli [TaxId: 562] [102973] (1)
      1. 1naq
        complexed with hg, mbo
        
        chain a [91761]
        chain b [91762]
        chain c [91763]
        chain d [91764]
        chain e [91765]
        chain f [91766]
    3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102974] (15)
      SQ O58720
      1. 1uku
        complexed with cu
        
        chain a [99533]
      2. 1umj
        Structural genomics target
        complexed with gai
        
        chain a [113310]
        chain b [113311]
      3. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region a:1-102 [119879]
      4. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region b:1-102 [119880]
      5. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region c:1-102 [119881]
      6. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region d:1-102 [119882]
      7. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region e:1-102 [119883]
      8. 1v99
        automatically matched to d1ukua_
        complexed with cl, cu, mes, so4
        
        region f:1-102 [119884]
      9. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region a:1-102 [119887]
      10. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region b:1-102 [119888]
      11. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region c:1-102 [119889]
      12. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region d:1-102 [119890]
      13. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region e:1-102 [119891]
      14. 1v9b
        automatically matched to d1ukua_
        complexed with co, so4
        
        region f:1-102 [119892]
      15. 1j2v
        mutant
        
        chain a [90804]
    4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89933] (1)
      1. 1p1l
        structural genomics
        
        chain a [87695]
  2. Hypothetical protein TM1056 [75435]
    1. Thermotoga maritima [TaxId: 2336] [75436] (3)
      1. 1kr4
        structural genomics
        complexed with mse
        
        chain a [72889]
      2. 1vhf
        structural genomics
        
        chain a [100671]
      3. 1o5j
        structural genomics
        
        chain a [92503]
  3. Mammalian CutA-like protein [102975]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [102976] (1)
      1. 1osc
        
        chain a [93490]
        chain b [93491]
        chain c [93492]
        chain d [93493]
        chain e [93494]
        chain f [93495]
    2. Human (Homo sapiens) [TaxId: 9606] [117946] (7)
      SQ O60888 40-146
      1. 2zfh
        automatically matched to d1xk8d_
        
        region a:63-169 [154408]
      2. 2zfh
        automatically matched to d1xk8d_
        
        region b:63-168 [154409]
      3. 2zfh
        automatically matched to d1xk8d_
        
        region c:63-168 [154410]
      4. 2zfh
        automatically matched to d1xk8d_
        
        region d:63-168 [154411]
      5. 2zfh
        automatically matched to d1xk8d_
        
        region e:63-168 [154412]
      6. 2zfh
        automatically matched to d1xk8d_
        
        region f:63-168 [154413]
      7. 1xk8
        Structural genomics target
        complexed with na
        
        chain a [115402]
        chain b [115403]
        chain c [115404]
        chain d [115405]
        chain e [115406]
        chain f [115407]
3. DUF190/COG1993 [89934] (1)
  1. Hypothetical protein TM0021 [89935]
    1. Thermotoga maritima [TaxId: 2336] [89936] (1)
      1. 1o51
        structural genomics
        complexed with adp, so4
        
        chain a [92480]
4. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [88851] (2)
  1. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [82669]
    binds allosteric inhibitor histidine
    1. Mycobacterium tuberculosis [TaxId: 1773] [82670] (2)
      1. 1nh8
        complexed with amp, his, so4
        
        region a:211-284 [80508]
      2. 1nh7
        complexed with mo6, so4
        
        region a:211-284 [80506]
    2. Escherichia coli [TaxId: 562] [102977] (2)
      1. 1h3d
        complexed with amp, tla
        
        region a:225-299 [90593]
      2. 1q1k
        complexed with prt, tla
        
        region a:225-299 [95590]
5. RPA1041-like [160310] (1)
  PF09413; DUF2007; provisional superfamily assignment based on a single monomeric solution structure
  1. Hypothetical protein RPA1041 [160311]
    1. Rhodopseudomonas palustris [TaxId: 1076] [160312] (1)
      SQ Q6NAY9 1-75
      missannotated in PDB 2HFV as Pseudomonas aeruginosa
      1. 2hfv
        
        region a:23-97 [147279]
SEA domain [82671] (1)
uperfamily
1. SEA domain [82672] (1)
  1. SEA domain from the hypothetical protein homologous to mucin 16 [82673]
    1. Mouse (Mus musculus) [TaxId: 10090] [82674] (1)
      1. 1ivz
        structural genomics
        
        chain a [76863]
Nucleoside diphosphate kinase, NDK [54919] (1)
uperfamily
1. Nucleoside diphosphate kinase, NDK [54920] (20)
  1. Nucleoside diphosphate kinase, NDK [54921]
    1. Human (Homo sapiens) [TaxId: 9606] [54922] (14)
      1. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region a:2-151 [155055]
      2. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region b:2-151 [155056]
      3. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region c:5-151 [155057]
      4. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region d:2-151 [155058]
      5. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region e:5-151 [155059]
      6. 3bbb
        automatically matched to d1nskl_
        complexed with da, dg
        
        region f:2-151 [155060]
      7. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region a:2-151 [155065]
      8. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region b:2-151 [155066]
      9. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region c:2-151 [155067]
      10. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region d:2-151 [155068]
      11. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region e:2-151 [155069]
      12. 3bbf
        automatically matched to d1nskl_
        complexed with dtt, gdp, mg
        
        region f:2-151 [155070]
      13. 1nue
        complexed with gdp, mg
        
        chain a [39076]
        chain b [39077]
        chain c [39078]
        chain d [39079]
        chain e [39080]
        chain f [39081]
      14. 1nsk
        CASP1
        
        chain r [39082]
        chain l [39083]
        chain t [39084]
        chain u [39085]
        chain n [39086]
        chain o [39087]
    2. Human (Homo sapiens), NDK4 [TaxId: 9606] [54923] (1)
      1. 1ehw
        complexed with so4; mutant
        
        chain a [39088]
        chain b [39089]
    3. Human (Homo sapiens), NDKA [TaxId: 9606] [75437] (5)
      1. 1ucn
        complexed with adp, ca, po4, trs; mutant
        
        chain a [99183]
        chain b [99184]
        chain c [99185]
      2. 1jxv
        
        chain a [71932]
        chain b [71933]
        chain c [71934]
        chain d [71935]
        chain e [71936]
        chain f [71937]
      3. 2hvd
        automatically matched to d1jxva_
        complexed with adp
        
        region a:4-152 [136801]
      4. 2hvd
        automatically matched to d1jxva_
        complexed with adp
        
        region b:4-152 [136802]
      5. 2hvd
        automatically matched to d1jxva_
        complexed with adp
        
        region c:4-152 [136803]
    4. Cow (Bos taurus) [TaxId: 9913] [54924] (2)
      1. 1be4
        complexed with pcg
        
        chain a [39090]
        chain b [39091]
        chain c [39092]
      2. 1bhn
        complexed with 35g, gdp
        
        chain a [39093]
        chain b [39094]
        chain c [39095]
        chain d [39096]
        chain e [39097]
        chain f [39098]
    5. Dictyostelium discoideum [TaxId: 44689] [54925] (27)
      1. 1hlw
        mutant
        
        chain a [39100]
      2. 1ndc
        complexed with mg, tyd
        
        chain a [39104]
      3. 1npk
        
        chain a [39099]
      4. 1f3f
        complexed with d4d, d4t, mg, po4; mutant
        
        chain a [39101]
        chain b [39102]
        chain c [39103]
      5. 1kdn
        complexed with adp, af3, mg
        
        chain a [39105]
        chain b [39106]
        chain c [39107]
      6. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region a:6-155 [118868]
      7. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region b:6-155 [118869]
      8. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region c:6-155 [118870]
      9. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region d:6-155 [118871]
      10. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region e:6-155 [118872]
      11. 1s5z
        automatically matched to d1f6tb_
        complexed with po4, son
        
        region f:6-155 [118873]
      12. 1ncl
        mutant
        
        chain a [39109]
      13. 1nsp
        complexed with phs
        
        chain a [39108]
      14. 1f6t
        complexed with mg, tbd
        
        chain a [39110]
        chain b [39111]
        chain c [39112]
      15. 1hhq
        complexed with so4; mutant
        
        chain a [61044]
      16. 1ndp
        complexed with adp, mg
        
        chain a [39113]
        chain b [39114]
      17. 2bef
        complexed with adp, bef, mg
        
        chain a [39115]
        chain b [39116]
        chain c [39117]
      18. 1mn7
        complexed with abt, mg; mutant
        
        chain a [79316]
        chain b [79317]
      19. 1lwx
        complexed with azd, mg; mutant
        
        chain a [39119]
        chain b [39120]
        chain c [39121]
      20. 1ndk
        mutant
        
        chain a [39118]
      21. 1b4s
        complexed with adp, mg, po4; mutant
        
        chain a [39122]
        chain b [39123]
        chain c [39124]
      22. 1leo
        mutant
        
        chain a [39125]
      23. 1b99
        complexed with fup, pop
        
        chain a [39126]
        chain b [39127]
        chain c [39128]
        chain d [39129]
        chain e [39130]
        chain f [39131]
      24. 1mn9
        complexed with mg, rtp; mutant
        
        chain a [85025]
        chain b [85026]
        chain c [85027]
      25. 1hiy
        complexed with 3an
        
        chain a [61068]
        chain b [61069]
        chain c [61070]
      26. 1pae
        complexed with cse, se; mutant
        
        chain x [94412]
      27. 1bux
        complexed with pps
        
        chain a [39132]
        chain b [39133]
        chain c [39134]
    6. Drosophila melanogaster [TaxId: 7227] [54926] (2)
      1. 1nsq
        complexed with phs
        
        chain a [39135]
        chain b [39136]
        chain c [39137]
      2. 1ndl
        
        chain a [39138]
        chain b [39139]
        chain c [39140]
    7. Myxococcus xanthus [TaxId: 34] [54927] (3)
      1. 1nhk
        complexed with cmp
        
        chain r [39141]
        chain l [39142]
      2. 2nck
        
        chain r [39143]
        chain l [39144]
      3. 1nlk
        complexed with adp, mg
        
        chain r [39145]
        chain l [39146]
    8. Mycobacterium tuberculosis [TaxId: 1773] [75438] (1)
      1. 1k44
        
        chain a [72033]
        chain b [72034]
        chain c [72035]
        chain d [72036]
        chain e [72037]
        chain f [72038]
    9. Bacillus halodenitrificans [TaxId: 1482] [89937] (1)
      1. 1nb2
        
        chain a [85508]
    10. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117947] (1)
      SQ Q8ID43
      1. 1xiq
        
        chain a [115361]
        chain b [115362]
        chain c [115363]
        chain d [115364]
        chain e [115365]
        chain f [115366]
    11. Pea (Pisum sativum) [TaxId: 3888] [117948] (1)
      SQ Q9SP13 81-231
      1. 1w7w
        mutant
        
        chain a [114327]
        chain b [114328]
        chain c [114329]
        chain d [114330]
        chain e [114331]
        chain f [114332]
    12. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117949] (1)
      SQ P39207
      1. 1u8w
        
        chain a [113204]
        chain b [113205]
        chain c [113206]
        chain d [113207]
        chain e [113208]
        chain f [113209]
    13. Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702] [117950] (2)
      SQ O64903 79-231
      1. 1s57
        complexed with epe, so4
        
        chain a [112028]
        chain b [112029]
        chain c [112030]
        chain d [112031]
        chain e [112032]
        chain f [112033]
      2. 1s59
        complexed with dgi, dgt
        
        chain a [112034]
        chain b [112035]
        chain c [112036]
        chain d [112037]
        chain e [112038]
        chain f [112039]
    14. Human(Homo sapiens), NDK3 [TaxId: 9606] [143283] (3)
      SQ Q13232 18-169
      1. 1zs6
        complexed with adp
        
        region a:18-169 [125590]
      2. 1zs6
        automatically matched to 1ZS6 A:18-169
        complexed with adp
        
        region b:18-169 [125591]
      3. 1zs6
        automatically matched to 1ZS6 A:18-169
        complexed with adp
        
        region d:18-169 [125592]
    15. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143284] (12)
      SQ O58429 3-155
      1. 2dya
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
        
        region a:6-158 [131895]
      2. 2dya
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
        
        region b:6-158 [131896]
      3. 2dxe
        automatically matched to 2CWK A:6-158
        complexed with cl, gdp, mg
        
        region a:6-158 [131870]
      4. 2dxe
        automatically matched to 2CWK A:6-158
        complexed with cl, gdp, mg
        
        region b:6-158 [131871]
      5. 2dxd
        automatically matched to 2CWK A:6-158
        complexed with anp, cl
        
        region a:6-158 [131868]
      6. 2dxd
        automatically matched to 2CWK A:6-158
        complexed with anp, cl
        
        region b:6-158 [131869]
      7. 2dxf
        automatically matched to 2CWK A:6-158
        complexed with cl, gnp
        
        region a:6-158 [131872]
      8. 2dxf
        automatically matched to 2CWK A:6-158
        complexed with cl, gnp
        
        region b:6-158 [131873]
      9. 2cwk
        
        region a:6-158 [130925]
      10. 2cwk
        automatically matched to 2CWK A:6-158
        
        region b:6-157 [130926]
      11. 2dy9
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
        
        region a:6-158 [131893]
      12. 2dy9
        automatically matched to 2CWK A:6-158
        complexed with adp, cl, mg
        
        region b:6-158 [131894]
    16. Rice(Oryza sativa) [TaxId: 4530] [143285] (12)
      SQ Q07661 1-148
      1. 1pku
        
        region a:4-151 [118718]
      2. 1pku
        automatically matched to 1PKU A:4-151
        
        region b:4-151 [118719]
      3. 1pku
        automatically matched to 1PKU A:4-151
        
        region c:4-151 [118720]
      4. 1pku
        automatically matched to 1PKU A:4-151
        
        region d:4-151 [118721]
      5. 1pku
        automatically matched to 1PKU A:4-151
        
        region e:4-151 [118722]
      6. 1pku
        automatically matched to 1PKU A:4-151
        
        region f:4-151 [118723]
      7. 1pku
        automatically matched to 1PKU A:4-151
        
        region g:4-151 [118724]
      8. 1pku
        automatically matched to 1PKU A:4-151
        
        region h:4-151 [118725]
      9. 1pku
        automatically matched to 1PKU A:4-151
        
        region i:4-151 [118726]
      10. 1pku
        automatically matched to 1PKU A:4-151
        
        region j:4-151 [118727]
      11. 1pku
        automatically matched to 1PKU A:4-151
        
        region k:4-151 [118728]
      12. 1pku
        automatically matched to 1PKU A:4-151
        
        region l:4-151 [118729]
    17. Mimivirus [TaxId: 315393] [143286] (8)
      SQ Q5UQL3 2-137
      1. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region a:2-129 [128103]
      2. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region b:2-129 [128104]
      3. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region c:2-129 [128105]
      4. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region d:2-129 [128106]
      5. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region e:2-129 [128107]
      6. 2b8q
        automatically matched to 2B8P A:2-129
        complexed with mg, po4, tyd
        
        region f:2-129 [128108]
      7. 2b8p
        complexed with so4
        
        region a:2-129 [128101]
      8. 2b8p
        automatically matched to 2B8P A:2-129
        complexed with so4
        
        region b:2-129 [128102]
    18. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [143287] (3)
      SQ Q8ZWY4 2-183
      1. 1xqi
        complexed with pge, trs; mutant
        
        region a:14-195 [122237]
      2. 1xqi
        automatically matched to 1XQI A:14-195
        complexed with pge, trs; mutant
        
        region b:14-195 [122238]
      3. 1xqi
        automatically matched to 1XQI A:14-195
        complexed with pge, trs; mutant
        
        region c:14-195 [122239]
    19. Archaeon Halobacterium salinarum [TaxId: 2242] [143288] (15)
      SQ P61136 4-158
      1. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region a:4-155 [127588]
      2. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region b:5-155 [127589]
      3. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region c:4-156 [127590]
      4. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region d:4-155 [127591]
      5. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region e:4-155 [127592]
      6. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region f:4-155 [127593]
      7. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region g:4-155 [127594]
      8. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region h:4-155 [127595]
      9. 2az3
        automatically matched to 2AZ1 A:4-158
        complexed with cdp, mg
        
        region i:5-155 [127596]
      10. 2az1
        complexed with ca
        
        region a:4-158 [127580]
      11. 2az1
        automatically matched to 2AZ1 A:4-158
        complexed with ca
        
        region b:4-158 [127581]
      12. 2az1
        automatically matched to 2AZ1 A:4-158
        complexed with ca
        
        region c:4-158 [127582]
      13. 2az1
        automatically matched to 2AZ1 A:4-158
        complexed with ca
        
        region d:4-158 [127583]
      14. 2az1
        automatically matched to 2AZ1 A:4-158
        complexed with ca
        
        region e:5-158 [127584]
      15. 2az1
        automatically matched to 2AZ1 A:4-158
        complexed with ca
        
        region f:4-158 [127585]
    20. Thermus thermophilus [TaxId: 274] [143289] (6)
      SQ Q5SLV5 1-137
      1. 1wkj
        
        region a:1-137 [120983]
      2. 1wkj
        automatically matched to 1WKJ A:1-137
        
        region b:1-137 [120984]
      3. 1wkl
        automatically matched to 1WKJ A:1-137
        complexed with adp, atp, mg, phs
        
        region a:1-137 [120987]
      4. 1wkl
        automatically matched to 1WKJ A:1-137
        complexed with adp, atp, mg, phs
        
        region b:1-137 [120988]
      5. 1wkk
        automatically matched to 1WKJ A:1-137
        complexed with gdp
        
        region a:1-137 [120985]
      6. 1wkk
        automatically matched to 1WKJ A:1-137
        complexed with gdp
        
        region b:1-137 [120986]
RNA-binding domain, RBD [54928] (5)
uperfamily
1. Canonical RBD [54929] (71)
  1. Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930]
    duplication: contains two domains of this fold
    1. Human (Homo sapiens) [TaxId: 9606] [54931] (14)
      SQ P09651 7-188
      1. 1l3k
        
        region a:8-91 [73539]
        region a:103-181 [73540]
      2. 1u1q
        complexed with di
        
        chain a [107598]
      3. 1up1
        
        region a:7-92 [39149]
        region a:99-182 [39150]
      4. 1u1r
        complexed with 2pr
        
        chain a [107599]
      5. 1u1p
        complexed with 2pr
        
        chain a [107597]
      6. 1ha1
        
        region a:8-92 [39147]
        region a:99-180 [39148]
      7. 2up1
        protein/DNA complex
        
        region a:8-98 [39151]
        region a:99-190 [39152]
      8. 1u1o
        complexed with di
        
        chain a [107596]
      9. 1u1n
        complexed with prn
        
        chain a [107595]
      10. 1u1k
        complexed with 7da
        
        chain a [107592]
      11. 1u1l
        complexed with prn
        
        chain a [107593]
      12. 1u1m
        complexed with 7gu
        
        chain a [107594]
      13. 1po6
        complexed with 6mi
        
        region a:8-98 [94964]
        region a:99-190 [94965]
      14. 1pgz
        complexed with 6mi
        
        region a:8-98 [94697]
        region a:99-190 [94698]
  2. Nuclear ribonucleoprotein D0 (AUF1) [75439]
    1. Human (Homo sapiens) [TaxId: 9606] [75440] (3)
      1. 1x0f
        automatically matched to d1iqta_
        
        region a:183-257 [121546]
      2. 1iqt
        domain 1
        
        chain a [71279]
      3. 1wtb
        automatically matched to d1iqta_
        
        region a:183-257 [121256]
  3. Splicesomal U1A protein [54932]
    duplication: contains two domains of this fold
    1. Human (Homo sapiens) [TaxId: 9606] [54933] (38)
      SQ P09012 1-97 ! SQ P09012 4-98 ! SQ P09012 1-98
      1. 1nu4
        contains a pre-organized C-terminal helix
        complexed with mg, mla; mutant
        
        chain a [80731]
        chain b [80732]
      2. 1urn
        domain 1
        protein/RNA complex; complexed with cl, gol; mutant
        
        chain a [39153]
        chain b [39154]
        chain c [39155]
      3. 1m5o
        domain 1, complex with a ribozyme
        complexed with avc, ca; mutant
        
        chain c [78654]
        chain f [78655]
      4. 1sj3
        complexed with mg; mutant
        
        chain p [105601]
      5. 1cx0
        domain 1, complex with a hepatitis delta virus ribozyme
        complexed with mg; mutant
        
        chain a [39158]
      6. 1oia
        
        chain a [87051]
        chain b [87052]
      7. 1m5v
        domain 1, complex with a ribozyme
        complexed with a23, ca, mpd; mutant
        
        chain c [78662]
        chain f [78663]
      8. 1vc7
        complexed with sr; mutant
        
        chain a [108497]
      9. 1drz
        domain 1, complex with a hepatitis delta virus ribozyme
        complexed with mg, so4; mutant
        
        chain a [39159]
      10. 1m5k
        domain 1, complex with a hairpin ribozyme
        complexed with ca, ch3, cl, gtp, ido; mutant
        
        chain c [74509]
        chain f [74510]
      11. 1vc0
        complexed with sr; mutant
        
        chain a [108492]
      12. 2nz4
        automatically matched to d1auda_
        complexed with a2m, glp, gtp, mg; mutant
        
        region a:7-96 [138833]
      13. 2nz4
        automatically matched to d1auda_
        complexed with a2m, glp, gtp, mg; mutant
        
        region b:7-96 [138834]
      14. 2nz4
        automatically matched to d1auda_
        complexed with a2m, glp, gtp, mg; mutant
        
        region c:8-96 [138835]
      15. 2nz4
        automatically matched to d1auda_
        complexed with a2m, glp, gtp, mg; mutant
        
        region d:7-96 [138836]
      16. 1sj4
        mutant
        
        chain p [105602]
      17. 1vbx
        mutant
        
        chain a [108489]
      18. 2oih
        automatically matched to d1auda_
        complexed with tl; mutant
        
        region a:4-98 [139100]
      19. 1m5p
        domain 1, complex with a ribozyme
        complexed with 5cg, ca; mutant
        
        chain c [78656]
        chain f [78657]
      20. 1sjf
        complexed with nco; mutant
        
        chain a [105646]
      21. 1vby
        complexed with mn, na; mutant
        
        chain a [108490]
      22. 1vc6
        complexed with mg; mutant
        
        chain a [108496]
      23. 1vbz
        complexed with ba; mutant
        
        chain a [108491]
      24. 2oj3
        automatically matched to d1auda_
        complexed with nco, tl; mutant
        
        region a:4-98 [139101]
      25. 3cul
        automatically matched to d1auda_
        complexed with gtp, k, mg; mutant
        
        region a:301-392 [156993]
      26. 3cul
        automatically matched to d1auda_
        complexed with gtp, k, mg; mutant
        
        region b:401-491 [156994]
      27. 3cun
        automatically matched to d1auda_
        complexed with co, gtp, k, mg; mutant
        
        region a:302-392 [156997]
      28. 3cun
        automatically matched to d1auda_
        complexed with co, gtp, k, mg; mutant
        
        region b:401-491 [156998]
      29. 3bo4
        automatically matched to d1auda_
        complexed with a23, gtp, k, mg
        
        region a:6-97 [155441]
      30. 1u6b
        complexed with 5mu, a23, gtp, k, mg; mutant
        
        chain a [107703]
      31. 3bo3
        automatically matched to d1auda_
        complexed with a23, gtp, k, mg
        
        region a:6-97 [155440]
      32. 3bo2
        automatically matched to d1auda_
        complexed with a23, gtp, mg
        
        region a:6-97 [155439]
      33. 1zzn
        automatically matched to d1auda_
        complexed with 5mu, a23, gtp, k, mg; mutant
        
        region a:4-98 [125912]
      34. 1vc5
        complexed with na; mutant
        
        chain a [108495]
      35. 1aud
        protein/RNA complex; mutant
        
        chain a [39156]
      36. 1dz5
        domain 1
        protein/RNA complex; mutant
        
        chain a [39162]
        chain b [39163]
      37. 1fht
        domain 1
        
        chain a [39157]
      38. 2u1a
        domain 2
        mutant
        
        chain a [39164]
    2. Drosophila melanogaster [TaxId: 7227] [160313] (3)
      SQ P43332 1-104! SQ P43332 134-216
      1. 2b0g
        2nd RBD
        
        region a:1-83 [146085]
      2. 2aym
        2nd RBD
        
        region a:1-83 [146084]
      3. 2k3k
        1st RBD
        
        region a:1-104 [148266]
  4. Splicing factor U2B'' [54934]
    1. Human (Homo sapiens) [TaxId: 9606] [54935] (1)
      1. 1a9n
        protein/RNA complex; mutant
        
        chain b [39165]
        chain d [39166]
  5. Splicing factor U2AF 65 KDa subunit [54936]
    1. Human (Homo sapiens) [TaxId: 9606] [54937] (4)
      1. 2u2f
        second RNA-binding domain
        
        chain a [39167]
      2. 1o0p
        third RNA-binding domain; complexed with an N-terminal Sf1/Mbbp peptide, chain B
        
        chain a [86535]
      3. 1opi
        third RNA-binding domain; complexed with an N-terminal Sf1/Mbbp peptide, chain B
        
        chain a [93406]
      4. 1u2f
        first RNA-binding domain
        
        chain a [39168]
  6. Sex-lethal protein [54938]
    1. Drosophila melanogaster [TaxId: 7227] [54939] (4)
      1. 1b7f
        protein/RNA complex; mutant
        
        region a:123-204 [39169]
        region a:205-289 [39170]
        region b:123-204 [39171]
        region b:205-289 [39172]
      2. 3sxl
        
        region a:124-203 [39173]
        region a:206-289 [39174]
        region b:124-203 [39175]
        region b:206-289 [39176]
        region c:124-203 [39177]
        region c:206-289 [39178]
      3. 2sxl
        first RBD
        mutant
        
        chain a [39179]
      4. 1sxl
        second RNA-binding domain
        
        chain a [39180]
  7. Hu antigen C (Huc) [54940]
    1. Mouse (Mus musculus) [TaxId: 10090] [54941] (3)
      1. 1fnx
        
        region h:35-120 [83253]
        region h:121-208 [83254]
      2. 1d8z
        the first RNA-binding domain (RBD1)
        
        chain a [39181]
      3. 1d9a
        the second RNA-binding domain (RBD2)
        
        chain a [39182]
  8. Hu antigen D (Hud) [54942]
    1. Human (Homo sapiens) [TaxId: 9606] [54943] (2)
      1. 1fxl
        protein/RNA complex
        
        region a:37-118 [39183]
        region a:119-203 [39184]
      2. 1g2e
        protein/RNA complex
        
        region a:37-118 [39185]
        region a:119-203 [39186]
  9. Heterogeneous nuclear ribonucleoprotein d0 [54944]
    1. Human (Homo sapiens) [TaxId: 9606] [54945] (2)
      1. 1hd1
        RBD1
        
        chain a [39187]
      2. 1hd0
        RBD1
        
        chain a [39188]
  10. Neural RNA-binding protein Musashi-1 [54946]
    1. Mouse (Mus musculus) [TaxId: 10090] [54947] (2)
      1. 2mst
        RBD2
        
        chain a [39189]
      2. 2mss
        RBD2
        
        chain a [39190]
  11. Poly(A)-binding protein [54948]
    1. Human (Homo sapiens) [TaxId: 9606] [54949] (1)
      1. 1cvj
        protein/RNA complex
        
        region a:11-90 [39191]
        region a:91-179 [39192]
        region b:11-90 [39193]
        region b:91-175 [39194]
        region c:11-90 [39195]
        region c:91-178 [39196]
        region d:11-90 [39197]
        region d:91-175 [39198]
        region e:11-90 [39199]
        region e:91-178 [39200]
        region f:11-90 [39201]
        region f:91-173 [39202]
        region g:11-90 [39203]
        region g:91-175 [39204]
        region h:11-90 [39205]
        region h:91-175 [39206]
  12. Polypyrimidine tract-binding protein [54950]
    1. Human (Homo sapiens) [TaxId: 9606] [54951] (9)
      SQ P26599 54-141, 177-284, 335-531
      1. 2adc
        automatically matched to d1qm9a1
        
        region a:335-443 [126582]
      2. 2adc
        automatically matched to d1qm9a2
        
        region a:444-531 [126583]
      3. 2ad9
        
        region a:49-146 [126580]
      4. 2adb
        automatically matched to d1sjra_
        
        region a:177-284 [126581]
      5. 2evz
        automatically matched to d1qm9a1
        
        region a:12-120 [132443]
      6. 2evz
        automatically matched to d1qm9a2
        
        region a:121-208 [132444]
      7. 1sjr
        RR2
        
        chain a [105661]
      8. 1sjq
        RR1
        
        chain a [105660]
      9. 1qm9
        RR3-RR4 tandem; representative structure
        
        region a:1-110 [39207]
        region a:111-198 [39208]
  13. Nucleolin [54952]
    1. Golden hamster (Mesocricetus auratus) [TaxId: 10036] [54953] (4)
      1. 1fjc
        RBD2
        
        chain a [39212]
      2. 1fje
        protein/RNA complex
        
        region b:1-91 [39210]
        region b:92-175 [39211]
      3. 1fj7
        RBD1
        
        chain a [39209]
      4. 1rkj
        
        region a:1-91 [97613]
        region a:92-175 [97614]
  14. CBP20, 20KDa nuclear cap-binding protein [64274]
    1. Human (Homo sapiens) [TaxId: 9606] [64275] (6)
      1. 1h6k
        mutant
        
        chain x [60684]
        chain y [60685]
        chain z [60686]
      2. 1h2v
        mutant
        
        chain z [76595]
      3. 1h2t
        complexed with 7mg, gdp; mutant
        
        chain z [76583]
      4. 1n52
        complexed with gol, gtg, mg, pg4
        
        chain b [80002]
      5. 1h2u
        complexed with 7mg, gdp; mutant
        
        chain x [76590]
        chain y [76591]
      6. 1n54
        complexed with gol
        
        chain b [80006]
  15. RNA-binding protein 8 [89938]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [89939] (3)
      CG8781 protein
      1. 1rk8
        complexed with ca
        
        chain a [97603]
      2. 1oo0
        complexed with bme, gol, mpd, sr
        
        chain b [87183]
      3. 1hl6
        
        chain a [83609]
        chain c [83611]
    2. Human (Homo sapiens) [TaxId: 9606] [102978] (6)
      RBM8A, Y14
      1. 2j0s
        automatically matched to d1p27b_
        complexed with anp, mg
        
        region d:66-154 [137916]
      2. 2hyi
        automatically matched to d1p27b_
        complexed with anp, mg; mutant
        
        region b:64-154 [136891]
      3. 2hyi
        automatically matched to d1p27b_
        complexed with anp, mg; mutant
        
        region h:64-154 [136895]
      4. 1p27
        
        chain b [93908]
        chain d [93910]
      5. 2j0q
        automatically matched to d1p27b_
        complexed with anp, mg
        
        region d:66-154 [137909]
      6. 2j0q
        automatically matched to d1p27b_
        complexed with anp, mg
        
        region g:66-154 [137911]
  16. Lupus LA protein [89940]
    1. Human (Homo sapiens) [TaxId: 9606] [89941] (13)
      1. 1zh5
        automatically matched to d1s79a_
        complexed with so4
        
        region a:105-189 [125074]
      2. 1zh5
        automatically matched to d1s79a_
        complexed with so4
        
        region b:105-189 [125076]
      3. 2voo
        automatically matched to d1s79a_
        
        region a:105-188 [153374]
      4. 2voo
        automatically matched to d1s79a_
        
        region b:105-185 [153376]
      5. 2vod
        automatically matched to d1s79a_
        
        region a:105-192 [153366]
      6. 2vod
        automatically matched to d1s79a_
        
        region b:105-192 [153368]
      7. 2von
        automatically matched to d1s79a_
        
        region a:105-192 [153370]
      8. 2von
        automatically matched to d1s79a_
        
        region b:105-192 [153372]
      9. 1yty
        automatically matched to d1s79a_
        
        region a:105-189 [124019]
      10. 1yty
        automatically matched to d1s79a_
        
        region b:105-189 [124021]
      11. 2vop
        automatically matched to d1s79a_
        complexed with so4
        
        region a:105-191 [153378]
      12. 1s79
        central RBD
        
        chain a [98632]
      13. 1owx
        C-terminal RBD
        
        chain a [87494]
  17. Nuclear factor Aly [102979]
    1. Mouse (Mus musculus) [TaxId: 10090] [102980] (1)
      1. 1no8
        
        chain a [92018]
  18. Musashi-1 [102981]
    1. Mouse (Mus musculus) [TaxId: 10090] [102982] (1)
      1. 1uaw
        
        chain a [99139]
  19. Cleavage stimulation factor, 64 kda subunit [102983]
    1. Human (Homo sapiens) [TaxId: 9606] [102984] (1)
      1. 1p1t
        N-terminal RBD
        
        chain a [93899]
  20. Synaptojanin 2 [102985]
    1. Human (Homo sapiens) [TaxId: 9606] [102986] (1)
      1. 1ufw
        structural genomics
        
        chain a [99358]
  21. Heterogeneous nuclear ribonucleoprotein L-like [117951]
    1. Mouse (Mus musculus) [TaxId: 10090] [117952] (1)
      SQ Q921F4 116-207
      1. 1wex
        Structural genomics target
        
        chain a [114568]
  22. Calcipressin-1 [117953]
    1. Mouse (Mus musculus) [TaxId: 10090] [117954] (1)
      SQ Q9JHG6 14-103
      1. 1wey
        Structural genomics target; splicing variant
        
        chain a [114569]
  23. Heterogeneous nuclear ribonucleoprotein H' [117955]
    1. Human (Homo sapiens) [TaxId: 9606] [117956] (2)
      SQ P55795 103-193; 280-369
      1. 1wg5
        Structural genomics target; 1st RBD
        
        chain a [114602]
      2. 1wez
        Structural genomics target; 2nd RBD
        
        chain a [114570]
  24. TAR DNA-binding protein 43, TDP-43 [117957]
    1. Human (Homo sapiens) [TaxId: 9606] [117958] (2)
      SQ Q13148 193-267
      1. 2cqg
        
        region a:96-185 [130722]
      2. 1wf0
        Structural genomics target
        
        chain a [114571]
  25. RNA-binding protein Raly (Autoantigen p542) [117959]
    1. Human (Homo sapiens) [TaxId: 9606] [117960] (1)
      SQ Q9UKM9 1-97
      1. 1wf1
        Structural genomics target
        
        chain a [114572]
  26. Heterogeneous nuclear ribonucleoproteins C1/C2 [117961]
    1. Human (Homo sapiens) [TaxId: 9606] [117962] (1)
      SQ P07910 8-92
      1. 1wf2
        Structural genomics target
        
        chain a [114573]
  27. Probable RNA-binding protein KIAA1579 [117963]
    1. Human (Homo sapiens) [TaxId: 9606] [117964] (1)
      SQ Q9HCJ3 71-145
      1. 1wg1
        Structural genomics target
        
        chain a [114599]
  28. Splicing factor, arginine/serine-rich 9 (SFRS9) [117965]
    1. Mouse (Mus musculus) [TaxId: 10090] [117966] (1)
      SQ Q9D0B0 104-188
      1. 1wg4
        Structural genomics target
        
        chain a [114601]
  29. Poly(A)-specific ribonuclease PARN [117967]
    1. Mouse (Mus musculus) [TaxId: 10090] [117968] (1)
      SQ Q8VDG3 430-516; structure of the R3H domain (162-248) is also known (scop_sp 111031)
      1. 1whv
        Structural genomics target
        
        chain a [114652]
  30. Probable RNA-binding protein 19, Rbm19 [117969]
    1. Mouse (Mus musculus) [TaxId: 10090] [117970] (4)
      SQ Q8R3C6 399-484; 581-678
      1. 1whw
        Structural genomics target; 3rd RBD
        
        chain a [114653]
      2. 1whx
        Structural genomics target; 4th RBD
        
        chain a [114654]
      3. 2cph
        
        region a:454-547 [130700]
      4. 2cpf
        
        region a:362-446 [130699]
  31. Putative RNA-binding protein 15B, Rbm15b [117971]
    1. Mouse (Mus musculus) [TaxId: 10090] [117972] (1)
      SQ Q6PHZ5 81-164
      1. 1why
        Structural genomics target
        
        chain a [114655]
  32. Eukaryotic translation initiation factor 4B [117973]
    1. Human (Homo sapiens) [TaxId: 9606] [117974] (1)
      SQ P23588 88-178
      1. 1wi8
        Structural genomics target
        mutant
        
        chain a [114662]
  33. HIV Tat-specific factor 1 [143290]
    1. Human (Homo sapiens) [TaxId: 9606] [143291] (1)
      SQ O43719 256-354
      1. 2dit
        
        region a:8-106 [131533]
  34. Ataxin-2-binding protein 1 [143292]
    1. Human (Homo sapiens) [TaxId: 9606] [143293] (1)
      SQ Q9NWB1 109-196
      1. 2err
        
        region a:109-196 [132303]
  35. E3 ubiquitin protein ligase CNOT4 [143294]
    CCR4-NOT transcription complex subunit 4
    1. Mouse (Mus musculus) [TaxId: 10090] [143295] (1)
      SQ Q8BT14 101-198
      1. 2cpi
        
        region a:101-189 [130701]
  36. RNA-binding protein 41, RBM41 [143296]
    1. Human (Homo sapiens) [TaxId: 9606] [143297] (1)
      SQ Q96IZ5 291-392
      1. 2cpx
        
        region a:291-392 [130708]
  37. Nucleolysin TIAR [143298]
    1. Human (Homo sapiens) [TaxId: 9606] [143299] (2)
      SQ Q01085 1-90! SQ Q01085 187-282
      1. 2cqi
        1st RBD
        
        region a:1-90 [130724]
      2. 1x4g
        2nd RBD
        
        region a:8-103 [121689]
  38. Cold-inducible RNA-binding protein [143300]
    1. Human (Homo sapiens) [TaxId: 9606] [143301] (1)
      SQ Q14011 1-90
      1. 1x5s
        
        region a:8-97 [121719]
  39. Negative elongation factor E, NELF-E [143302]
    1. Human (Homo sapiens) [TaxId: 9606] [143303] (3)
      SQ P18615 257-335! SQ P18615 258-341
      1. 2bz2
        
        region a:35-113 [129533]
      2. 2jx2
        automatically matched to d1x5pa1
        
        region a:35-115 [148233]
      3. 1x5p
        
        region a:8-91 [121716]
  40. Eukaryotic translation initiation factor 3 subunit 4 [143304]
    1. Human (Homo sapiens) [TaxId: 9606] [143305] (1)
      SQ O75821 231-320
      1. 2cq0
        
        region a:231-320 [130711]
  41. Matrin 3 [143306]
    1. Mouse (Mus musculus) [TaxId: 10090] [143307] (2)
      SQ Q8K310 390-478! SQ Q8K310 478-576
      1. 1x4d
        1st RBD
        mutant
        
        region a:8-96 [121686]
      2. 1x4f
        2nd RBD
        
        region a:8-106 [121688]
  42. Ribonucleoprotein PTB-binding 1, Raver-1 [143308]
    1. Mouse (Mus musculus) [TaxId: 10090] [143309] (1)
      SQ Q9CW46 61-135
      1. 1wi6
        
        region a:69-143 [120974]
  43. Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310]
    1. Human (Homo sapiens) [TaxId: 9606] [143311] (1)
      SQ Q9UNP9 1-89
      1. 2cqb
        
        region a:1-89 [130717]
  44. Arginine/serine-rich splicing factor 10 [143312]
    1. Human (Homo sapiens) [TaxId: 9606] [143313] (1)
      SQ P62995 109-191
      1. 2cqc
        
        region a:109-191 [130718]
  45. RNA-binding protein 9 [143314]
    1. Human (Homo sapiens) [TaxId: 9606] [143315] (1)
      SQ O43251 110-202
      1. 2cq3
        
        region a:110-202 [130714]
  46. Pre-mRNA branch site protein p14 [143316]
    1. Human (Homo sapiens) [TaxId: 9606] [143317] (4)
      SQ Q9Y3B4 12-125
      1. 2f9d
        complex with peptide from Splicing factor 3B subunit 1 (SQ O75533 373-415), chains P and Q
        
        region a:12-125 [133159]
      2. 2f9d
        automatically matched to 2F9D A:12-125
        
        region b:12-125 [133160]
      3. 2f9j
        complex with peptide from Splicing factor 3B subunit 1 (SQ O75533 381-415), chains P and Q
        mutant
        
        region a:12-125 [133164]
      4. 2f9j
        automatically matched to 2F9J A:12-125
        mutant
        
        region b:12-125 [133165]
  47. Splicing factor 3B subunit 4 [143318]
    1. Human (Homo sapiens) [TaxId: 9606] [143319] (2)
      SQ Q15427 102-184! SQ Q15427 4-96
      1. 1x5t
        2nd RBD
        
        region a:8-90 [121720]
      2. 1x5u
        1st RBD
        
        region a:7-99 [121721]
  48. RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320]
    1. Human (Homo sapiens) [TaxId: 9606] [143321] (1)
      SQ Q15434 58-129
      1. 1x4e
        
        region a:8-79 [121687]
  49. RNA-binding protein UBP1 [143322]
    1. Trypanosoma cruzi [TaxId: 5693] [143323] (1)
      SQ Q967R0 1-139
      1. 1u6f
        
        region a:1-139 [119572]
  50. Limkain-b1, LKAP [143324]
    KIAA0430
    1. Human (Homo sapiens) [TaxId: 9606] [143325] (1)
      SQ Q9Y4F3 788-870
      1. 2dgx
        
        region a:563-635 [131515]
  51. APOBEC1 stimulating protein [143326]
    1. Human (Homo sapiens) [TaxId: 9606] [143327] (1)
      SQ Q9NQ94 223-308
      1. 2cpd
        
        region a:223-308 [130697]
  52. Hypothetical protein FLJ20273 [143328]
    1. Human (Homo sapiens) [TaxId: 9606] [143329] (1)
      SQ Q8NI52 150-245
      1. 2dis
        
        region a:8-103 [131532]
  53. Nucleoporin 35 [143330]
    1. Mouse (Mus musculus) [TaxId: 10090] [143331] (4)
      SQ Q8R4R6 169-249
      1. 1wwh
        
        region a:169-249 [121358]
      2. 1wwh
        automatically matched to 1WWH A:169-249
        
        region b:171-249 [121359]
      3. 1wwh
        automatically matched to 1WWH A:169-249
        
        region c:171-249 [121360]
      4. 1wwh
        automatically matched to 1WWH A:169-249
        
        region d:170-249 [121361]
  54. Polypyrimidine tract-binding protein 2, PTBP2 [143332]
    1. Human (Homo sapiens) [TaxId: 9606] [143333] (1)
      SQ Q9UKA9 51-138
      1. 2cq1
        1st RBD
        
        region a:51-138 [130712]
  55. Alkylation repair AlkB homolog 8, ALKBH8 [143334]
    1. Human (Homo sapiens) [TaxId: 9606] [143335] (1)
      SQ Q96BT7 25-125
      1. 2cq2
        
        region a:25-125 [130713]
  56. CUG triplet repeat RNA-binding protein 1 [143336]
    1. Human (Homo sapiens) [TaxId: 9606] [143337] (1)
      SQ Q92879 383-484
      1. 2cpz
        3rdRBD
        
        region a:383-484 [130710]
  57. U4/U6 snRNA-associated-splicing factor PRP24 [143338]
    contains three RBDs
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [143339] (24)
      SQ P49960 116-196! SQ P49960 206-291! SQ P49960 41-115
      1. 2ghp
        
        region a:116-196 [135184]
      2. 2ghp
        
        region a:41-115 [135185]
      3. 2ghp
        
        region a:206-291 [135186]
      4. 2ghp
        automatically matched to 2GHP A:116-196
        
        region b:116-196 [135187]
      5. 2ghp
        automatically matched to 2GHP A:41-115
        
        region b:41-115 [135188]
      6. 2ghp
        automatically matched to 2GHP A:206-291
        
        region b:206-291 [135189]
      7. 2ghp
        automatically matched to 2GHP A:116-196
        
        region c:116-196 [135190]
      8. 2ghp
        automatically matched to 2GHP A:41-115
        
        region c:41-115 [135191]
      9. 2ghp
        automatically matched to 2GHP A:206-291
        
        region c:206-291 [135192]
      10. 2ghp
        automatically matched to 2GHP A:116-196
        
        region d:116-196 [135193]
      11. 2ghp
        automatically matched to 2GHP A:41-115
        
        region d:41-115 [135194]
      12. 2ghp
        automatically matched to 2GHP A:206-291
        
        region d:206-291 [135195]
      13. 2ghp
        automatically matched to 2GHP A:116-196
        
        region e:116-196 [135196]
      14. 2ghp
        automatically matched to 2GHP A:41-115
        
        region e:41-115 [135197]
      15. 2ghp
        automatically matched to 2GHP A:206-291
        
        region e:206-291 [135198]
      16. 2ghp
        automatically matched to 2GHP A:116-196
        
        region f:116-196 [135199]
      17. 2ghp
        automatically matched to 2GHP A:41-115
        
        region f:41-115 [135200]
      18. 2ghp
        automatically matched to 2GHP A:206-291
        
        region f:206-291 [135201]
      19. 2ghp
        automatically matched to 2GHP A:116-196
        
        region g:116-196 [135202]
      20. 2ghp
        automatically matched to 2GHP A:41-115
        
        region g:41-115 [135203]
      21. 2ghp
        automatically matched to 2GHP A:206-291
        
        region g:206-291 [135204]
      22. 2ghp
        automatically matched to 2GHP A:116-196
        
        region h:116-196 [135205]
      23. 2ghp
        automatically matched to 2GHP A:41-115
        
        region h:41-115 [135206]
      24. 2ghp
        automatically matched to 2GHP A:206-291
        
        region h:206-291 [135207]
  58. RNA-binding protein EWS [143340]
    1. Human (Homo sapiens) [TaxId: 9606] [143341] (1)
      SQ Q01844 353-453
      1. 2cpe
        
        region a:353-453 [130698]
  59. Heterogeneous nuclear ribonucleoproteins A2/B1 [143342]
    1. Human (Homo sapiens) [TaxId: 9606] [143343] (1)
      SQ P22626 1-103
      1. 1x4b
        1st RBD
        
        region a:8-110 [121684]
  60. IGF-II mRNA-binding protein 2 isoform A [143344]
    1. Human (Homo sapiens) [TaxId: 9606] [143345] (1)
      SQ Q9Y6M1 2-81
      1. 2cqh
        1st RBD
        
        region a:2-81 [130723]
  61. Splicing factor, arginine/serine-rich 1, SFRS1 [143346]
    1. Human (Homo sapiens) [TaxId: 9606] [143347] (3)
      SQ Q07955 1-95
      1. 3beg
        automatically matched to d1x4ca1
        complexed with ala, anp
        
        region b:121-207 [155185]
      2. 1x4a
        1st RBD
        
        region a:9-103 [121683]
      3. 2o3d
        automatically matched to d1x4ca1
        
        region a:121-207 [148572]
    2. Mouse (Mus musculus) [TaxId: 10090] [143348] (1)
      SQ Q6PDM2 112-206
      1. 1x4c
        
        region a:8-102 [121685]
  62. RNA-binding protein 12 [143349]
    3rd RBD
    1. Human (Homo sapiens) [TaxId: 9606] [143350] (2)
      SQ Q9NTZ6 412-523! SQ Q9NTZ6 536-638
      1. 1wel
        1st RBD
        
        region a:412-523 [120965]
      2. 2cpy
        2nd RBD
        
        region a:536-638 [130709]
    2. Mouse (Mus musculus) [TaxId: 10090] [143351] (1)
      SQ Q8R4X3 917-1002
      1. 2cqp
        C-terminal (4th) RBD
        
        region a:917-1002 [130727]
  63. RNA binding protein 23 [143352]
    1. Human (Homo sapiens) [TaxId: 9606] [143353] (1)
      SQ Q86U06 148-248
      1. 2cq4
        1st RBD
        
        region a:132-232 [130715]
  64. Non-POU domain-containing octamer-binding protein, NonO [143354]
    1. Mouse (Mus musculus) [TaxId: 10090] [143355] (1)
      SQ Q99K48 68-153
      1. 2cpj
        1st RBD
        
        region a:65-150 [130702]
  65. RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356]
    1. Human (Homo sapiens) [TaxId: 9606] [143357] (1)
      SQ P29558 123-223
      1. 1x5o
        
        region a:8-108 [121715]
  66. RNA-binding protein 28 [143358]
    1. Mouse (Mus musculus) [TaxId: 10090] [143359] (1)
      SQ Q8CGC6 316-413
      1. 1x4h
        mutant
        
        region a:8-105 [121690]
  67. RNA-binding region containing protein 1 [143360]
    1. Human (Homo sapiens) [TaxId: 9606] [143361] (1)
      SQ Q9H0Z9 1-103
      1. 2cqd
        
        region a:1-103 [130719]
2. Non-canonical RBD domain [54954] (1)
  1. mRNA export factor tap [54955]
    1. Human (Homo sapiens) [TaxId: 9606] [54956] (5)
      1. 1koh
        mutant
        
        region a:105-200 [68720]
        region c:104-200 [68723]
      2. 1koo
        mutant
        
        region a:105-200 [68727]
        region c:101-200 [68730]
      3. 1fo1
        disordered
        
        region a:123-191 [39213]
      4. 1ft8
        mutant
        
        chain e [39216]
      5. 1ft8
        chain E domain disordered
        mutant
        
        region a:118-199 [39214]
        region c:117-198 [39215]
3. Splicing factor U2AF subunits [64276] (1)
  1. U2AF35 (35 KDa subunit) [64277]
    1. Human (Homo sapiens) [TaxId: 9606] [64278] (1)
      1. 1jmt
        heterodimer with a fragment U2AF65 subunit; chain B
        complexed with hez; mutant
        
        chain a [63180]
4. Smg-4/UPF3 [102987] (1)
  Pfam 03467
  1. RNA processing protein UPF3x, RRM domain [102988]
    1. Human (Homo sapiens) [TaxId: 9606] [102989] (1)
      1. 1uw4
        complexed with bme
        
        chain a [100071]
        chain c [100073]
5. GUCT domain [160314] (1)
  Pfam 08152
  1. ATP-dependent RNA helicase DDX50 [160315]
    1. Human (Homo sapiens) [TaxId: 9606] [160316] (1)
      SQ Q9BQ39 575-659
      1. 2e29
        
        region a:8-92 [146643]
Viral DNA-binding domain [54957] (1)
uperfamily
1. Viral DNA-binding domain [54958] (6)
  1. Papillomavirus-1 E2 protein [54959]
    forms dimers with subunit beta-sheets making (8,12) barrel
    1. Bovine papillomavirus type 1 [TaxId: 10559] [54960] (3)
      1. 2bop
        protein/DNA complex; complexed with yb
        
        chain a [39217]
      2. 1jjh
        
        chain a [63119]
        chain b [63120]
        chain c [63121]
      3. 1dbd
        
        chain a [39218]
        chain b [39219]
    2. Human papillomavirus type 31 [TaxId: 10585] [54961] (2)
      1. 1a7g
        complexed with so4
        
        chain e [39220]
      2. 1dhm
        
        chain a [39221]
        chain b [39222]
    3. Human papillomavirus type 16 [TaxId: 333760] [54962] (5)
      SQ P03120 286-365
      1. 2q79
        automatically matched to d1r8pa_
        complexed with so4
        
        region a:284-362 [150084]
      2. 1by9
        
        chain a [39223]
      3. 1zzf
        automatically matched to d1by9__
        
        region a:2-80 [125902]
      4. 1zzf
        automatically matched to d1by9__
        
        region b:2-80 [125903]
      5. 1r8p
        
        chain a [111720]
        chain b [111721]
    4. Human papillomavirus type 18 [TaxId: 333761] [54963] (2)
      1. 1f9f
        complexed with so4
        
        chain a [39224]
        chain b [39225]
        chain c [39226]
        chain d [39227]
      2. 1jj4
        
        chain a [63112]
        chain b [63113]
    5. Human papillomavirus type 6a [TaxId: 37122] [102990] (11)
      1. 1r8h
        complexed with po4
        
        chain a [97233]
        chain b [97234]
        chain c [97235]
        chain d [97236]
        chain e [97237]
        chain f [97238]
      2. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region a:282-366 [127546]
      3. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region b:281-366 [127547]
      4. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region c:281-366 [127548]
      5. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region d:281-366 [127549]
      6. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region e:281-366 [127550]
      7. 2aye
        automatically matched to d1r8ha_
        complexed with gol, so4
        
        region f:282-366 [127551]
      8. 2ayg
        automatically matched to d1r8ha_
        
        region a:281-366 [127552]
      9. 2ayg
        automatically matched to d1r8ha_
        
        region b:281-366 [127553]
      10. 2ayb
        automatically matched to d1r8ha_
        
        region a:281-366 [127544]
      11. 2ayb
        automatically matched to d1r8ha_
        
        region b:281-366 [127545]
  2. Epstein barr virus nuclear antigen-1 (ebna1) [54964]
    DNA-binding mode differs from that of E2 protein
    1. Epstein-Barr virus [TaxId: 10376] [54965] (2)
      1. 1b3t
        protein/DNA complex
        
        chain a [39228]
        chain b [39229]
      2. 1vhi
        
        chain a [39230]
        chain b [39231]
RuBisCO, large subunit, small (N-terminal) domain [54966] (1)
C-terminal domain is beta/alpha barrel
uperfamily
1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [54967] (12)
  1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [54968]
    1. Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097] [54969] (5)
      1. 3rub
        complexed with so4
        
        region l:22-147 [39232]
      2. 1ej7
        complexed with po4
        
        region l:18-147 [39233]
      3. 1rlc
        complexed with cap
        
        region l:22-147 [39236]
      4. 1rld
        
        region a:22-147 [39234]
        region b:22-147 [39235]
      5. 4rub
        complexed with cap, cbx, mg
        
        region a:9-147 [39237]
        region b:9-147 [39238]
        region c:9-147 [39239]
        region d:9-147 [39240]
    2. Spinach (Spinacia oleracea) [TaxId: 3562] [54970] (11)
      1. 8ruc
        complexed with cap, mg
        
        region a:9-147 [39245]
        region c:9-147 [39246]
        region e:9-147 [39247]
        region g:9-147 [39248]
      2. 1ir1
        complexed with cap, kcx, mg, mme
        
        region a:12-147 [71283]
        region b:12-147 [71285]
        region c:12-147 [71287]
        region d:12-147 [71289]
      3. 1rbo
        complexed with cap
        
        region l:9-147 [39249]
        region b:9-147 [39250]
        region e:9-147 [39251]
        region h:9-147 [39252]
      4. 1aa1
        complexed with 3pg, mg
        
        region l:21-147 [39253]
        region b:21-147 [39254]
        region e:21-147 [39255]
        region h:21-147 [39256]
      5. 1rxo
        complexed with ca, rub
        
        region l:9-147 [39257]
        region b:9-147 [39258]
        region e:9-147 [39259]
        region h:9-147 [39260]
      6. 1aus
        complexed with cbx, mg
        
        region l:20-147 [39261]
      7. 1aus
        duplicate of 1AUS L:20-147
        complexed with cbx, mg
        
        region m:20-147 [118410]
      8. 1aus
        duplicate of 1AUS L:20-147
        complexed with cbx, mg
        
        region n:20-147 [118412]
      9. 1aus
        duplicate of 1AUS L:20-147
        complexed with cbx, mg
        
        region o:20-147 [118414]
      10. 1rco
        complexed with xdp
        
        region l:9-147 [39262]
        region b:9-147 [39263]
        region e:9-147 [39264]
        region h:9-147 [39265]
        region k:9-147 [39266]
        region o:9-147 [39267]
        region r:9-147 [39268]
        region v:9-147 [39269]
      11. 1rcx
        complexed with rub
        
        region l:9-147 [39270]
        region b:9-147 [39271]
        region e:9-147 [39272]
        region h:9-147 [39273]
        region k:9-147 [39274]
        region o:9-147 [39275]
        region r:9-147 [39276]
        region v:9-147 [39277]
    3. Galdieria partita [TaxId: 83374] [54971] (2)
      1. 1bwv
        complexed with cap, mg
        
        region a:7-149 [39278]
        region c:7-149 [39279]
        region e:7-149 [39280]
        region g:7-149 [39281]
      2. 1iwa
        complexed with so4
        
        region a:6-149 [83727]
        region c:6-149 [83730]
        region e:6-149 [83733]
        region g:6-149 [83736]
        region i:6-149 [83739]
        region k:6-149 [83742]
        region m:6-149 [83745]
        region o:6-149 [83748]
    4. Chlamydomonas reinhardtii [TaxId: 3055] [69730] (74)
      1. 1gk8
        complexed with cap, egl, mg, mme
        
        region a:7-149 [65235]
        region c:7-149 [65237]
        region e:11-149 [65239]
        region g:9-149 [65241]
      2. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region a:9-149 [152693]
      3. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region b:9-149 [152695]
      4. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region c:9-149 [152697]
      5. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region d:10-149 [152699]
      6. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region e:11-149 [152701]
      7. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region f:11-149 [152703]
      8. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region g:11-149 [152705]
      9. 2v6a
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region h:9-149 [152707]
      10. 1ir2
        complexed with cap, cry, hyp, kcx, mg, mme, smc
        
        region a:8-149 [71303]
        region b:9-149 [71305]
        region c:10-149 [71307]
        region d:9-149 [71309]
        region e:11-149 [71311]
        region f:11-149 [71313]
        region g:10-149 [71315]
        region h:8-149 [71317]
        region s:11-149 [71327]
        region t:10-149 [71329]
        region u:7-149 [71331]
        region v:7-149 [71333]
        region w:10-149 [71335]
        region x:10-149 [71337]
        region y:11-149 [71339]
        region z:10-149 [71341]
      11. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region a:11-149 [119711]
      12. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region b:11-149 [119713]
      13. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region e:11-149 [119716]
      14. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region h:11-149 [119719]
      15. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region k:11-149 [119723]
      16. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region o:11-149 [119726]
      17. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region r:11-149 [119729]
      18. 1uw9
        automatically matched to d1gk8a2
        complexed with cap, edo, mg; mutant
        
        region v:11-149 [119732]
      19. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region a:10-149 [152621]
      20. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region b:10-149 [152623]
      21. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region c:10-149 [152625]
      22. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region d:11-149 [152627]
      23. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region e:11-149 [152629]
      24. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region f:10-149 [152631]
      25. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region g:10-149 [152633]
      26. 2v67
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region h:10-149 [152635]
      27. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region a:9-149 [152594]
      28. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region b:9-149 [152596]
      29. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region c:9-149 [152598]
      30. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region d:11-149 [152600]
      31. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region e:11-149 [152602]
      32. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region f:9-149 [152604]
      33. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region g:9-149 [152606]
      34. 2v63
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region h:9-149 [152608]
      35. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region a:11-149 [119791]
      36. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region b:11-149 [119793]
      37. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region e:11-149 [119795]
      38. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region h:11-149 [119797]
      39. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region k:11-149 [119799]
      40. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region o:11-149 [119801]
      41. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region r:11-149 [119803]
      42. 1uzh
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region v:11-149 [119805]
      43. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region a:10-149 [152645]
      44. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region b:10-149 [152647]
      45. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region c:10-149 [152649]
      46. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region d:11-149 [152651]
      47. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region e:10-149 [152653]
      48. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region f:10-149 [152655]
      49. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region g:10-149 [152657]
      50. 2v68
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region h:10-149 [152659]
      51. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region a:11-149 [119735]
      52. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region b:11-149 [119737]
      53. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region e:11-149 [119740]
      54. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region h:11-149 [119743]
      55. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region k:11-149 [119747]
      56. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region o:11-149 [119750]
      57. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region r:11-149 [119753]
      58. 1uwa
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, pyc; mutant
        
        region v:11-149 [119756]
      59. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region a:11-149 [119775]
      60. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region b:11-149 [119777]
      61. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region e:11-149 [119779]
      62. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region h:11-149 [119781]
      63. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region k:11-149 [119783]
      64. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region o:11-149 [119785]
      65. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region r:11-149 [119787]
      66. 1uzd
        automatically matched to d1gk8a2
        complexed with cap, edo, mg
        
        region v:11-149 [119789]
      67. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region a:11-149 [152669]
      68. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region b:11-149 [152671]
      69. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region c:12-149 [152673]
      70. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region d:11-149 [152675]
      71. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region e:11-149 [152677]
      72. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region f:11-149 [152679]
      73. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region g:11-149 [152681]
      74. 2v69
        automatically matched to d1gk8a2
        complexed with cap, edo, mg, mme; mutant
        
        region h:12-149 [152683]
    5. Alcaligenes eutrophus [TaxId: 106590] [54972] (1)
      1. 1bxn
        complexed with po4
        
        region a:22-150 [39282]
        region c:22-150 [39283]
        region e:22-150 [39284]
        region g:22-150 [39285]
    6. Synechococcus sp., strain pcc 6301 [TaxId: 1131] [54973] (16)
      1. 1rbl
        complexed with cap, cbx, mg
        
        region a:9-147 [39286]
      2. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region b:9-147 [118586]
      3. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region c:9-147 [118588]
      4. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region d:9-147 [118590]
      5. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region e:9-147 [118592]
      6. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region f:9-147 [118594]
      7. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region g:9-147 [118596]
      8. 1rbl
        duplicate of 1RBL A:9-147
        complexed with cap, cbx, mg
        
        region h:9-147 [118598]
      9. 1rsc
        complexed with xbp
        
        region a:9-147 [39287]
      10. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region b:9-147 [118607]
      11. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region c:9-147 [118609]
      12. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region d:9-147 [118611]
      13. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region e:9-147 [118613]
      14. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region f:9-147 [118615]
      15. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region g:9-147 [118617]
      16. 1rsc
        duplicate of 1RSC A:9-147
        complexed with xbp
        
        region h:9-147 [118619]
    7. Rhodospirillum rubrum [TaxId: 1085] [54974] (5)
      1. 5rub
        
        region a:2-137 [39288]
        region b:2-137 [39289]
      2. 2rus
        complexed with for, mg
        
        region a:2-137 [39290]
        region b:3-137 [39291]
      3. 1rus
        complexed with mp3
        
        region a:3-137 [39294]
        region b:3-137 [39295]
      4. 9rub
        complexed with cbx, mg, rub
        
        region a:2-137 [39292]
        region b:2-137 [39293]
      5. 1rba
        mutant
        
        region a:5-137 [39296]
        region b:5-137 [39297]
    8. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [69731] (1)
      1. 1geh
        complexed with so4
        
        region a:12-136 [65182]
        region b:12-136 [65184]
        region c:12-136 [65186]
        region d:12-136 [65188]
        region e:12-136 [65190]
    9. Chlorobium tepidum [TaxId: 1097] [117975] (3)
      SQ Q8KBL4 1-428
      1. 1ykw
        mutant
        
        region a:4-145 [123566]
      2. 1ykw
        automatically matched to 1YKW A:4-145
        mutant
        
        region b:4-145 [123568]
      3. 1tel
        
        region a:1001-1145 [112406]
        region b:2001-2145 [112408]
    10. Rice (Oryza sativa) [TaxId: 4530] [117976] (1)
      SQ P12089
      1. 1wdd
        complexed with cap, gol, mg, mme
        
        region a:11-150 [114529]
        region e:12-150 [114531]
    11. Archaeon Halothiobacillus neapolitanus [TaxId: 927] [143362] (1)
      SQ O85040 16-142
      1. 1svd
        complexed with gol, so4
        
        region a:16-142 [119058]
    12. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143363] (10)
      SQ O58677 8-133
      1. 2d69
        automatically matched to 2CWX A:8-133
        complexed with so4
        
        region a:8-133 [131293]
      2. 2d69
        automatically matched to 2CWX A:8-133
        complexed with so4
        
        region b:8-133 [131295]
      3. 2d69
        automatically matched to 2CWX A:8-133
        complexed with so4
        
        region d:8-133 [131297]
      4. 2d69
        automatically matched to 2CWX A:8-133
        complexed with so4
        
        region e:9-133 [131299]
      5. 2cwx
        
        region a:8-133 [130957]
      6. 2cwx
        automatically matched to 2CWX A:8-133
        
        region e:10-133 [130959]
      7. 2cxe
        automatically matched to 2CWX A:8-133
        
        region a:9-133 [130997]
      8. 2cxe
        automatically matched to 2CWX A:8-133
        
        region b:9-133 [130999]
      9. 2cxe
        automatically matched to 2CWX A:8-133
        
        region c:9-133 [131001]
      10. 2cxe
        automatically matched to 2CWX A:8-133
        
        region d:9-133 [131003]
Acylphosphatase/BLUF domain-like [54975] (2)
uperfamily
1. Acylphosphatase-like [54976] (6)
  1. Acylphosphatase [54977]
    1. Cow (Bos taurus) [TaxId: 9913] [54978] (1)
      1. 2acy
        complexed with cl, so4
        
        chain a [39298]
    2. Horse (Equus caballus) [TaxId: 9796] [54979] (1)
      1. 1aps
        
        chain a [39299]
    3. Pyrococcus horikoshii [TaxId: 53953] [110973] (2)
      SQ P84142
      1. 1w2i
        complexed with fmt
        
        chain a [109127]
        chain b [109128]
      2. 1v3z
        complexed with cl, k
        
        chain a [113510]
        chain b [113511]
    4. Thermus thermophilus [TaxId: 274] [117977] (1)
      SQ Q5SKS6
      1. 1ulr
        Structural genomics target
        
        chain a [113283]
  2. Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) [82675]
    1. Escherichia coli [TaxId: 562] [82676] (2)
      1. 1gxu
        complexed with cp
        
        chain a [76378]
      2. 1gxt
        complexed with cl, so4, trs
        
        chain a [76377]
  3. Acylphosphatase 2 (Cg18505) [110974]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [110975] (1)
      SQ Q9VF36
      1. 1urr
        complexed with gol
        
        chain a [107998]
2. BLUF domain [143364] (3)
  Pfam 04940; sensors of blue-light using FAD
  1. Blue light receptor BlrB [143365]
    1. Rhodobacter sphaeroides [TaxId: 1063] [143366] (2)
      SQ Q3IYE4 1-136
      1. 2byc
        complexed with fmn
        
        region a:1-136 [129476]
      2. 2byc
        automatically matched to 2BYC A:1-136
        complexed with fmn
        
        region b:501-631 [129477]
  2. Sensor of blue light AppA [143367]
    1. Rhodobacter sphaeroides [TaxId: 1063] [143368] (4)
      SQ Q53119 17-130! SQ Q53119 5-125
      1. 1yrx
        complexed with d9g, fmn
        
        region a:17-130 [123944]
      2. 1yrx
        automatically matched to 1YRX A:17-130
        complexed with d9g, fmn
        
        region b:17-129 [123945]
      3. 1yrx
        automatically matched to 1YRX A:17-130
        complexed with d9g, fmn
        
        region c:17-129 [123946]
      4. 2bun
        complexed with fad
        
        region a:5-125 [129223]
  3. Hypothetical protein Tll0078 [143369]
    1. Thermosynechococcus elongatus [TaxId: 146786] [143370] (10)
      SQ Q8DMN3 2-143
      1. 1x0p
        complexed with fad
        
        region a:102-243 [121552]
      2. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region b:1002-1140 [121553]
      3. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region c:2002-2140 [121554]
      4. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region d:3002-3140 [121555]
      5. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region e:4002-4142 [121556]
      6. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region f:5002-5143 [121557]
      7. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region g:6002-6140 [121558]
      8. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region h:7002-7139 [121559]
      9. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region i:8002-8142 [121560]
      10. 1x0p
        automatically matched to 1X0P A:102-243
        complexed with fad
        
        region j:9002-9140 [121561]
EF-G C-terminal domain-like [54980] (3)
uperfamily
1. EF-G/eEF-2 domains III and V [54981] (3)
  domain III structure is lacking some of the superfamily characters and is often disordered in crystals
  1. Elongation factor G (EF-G) [54982]
    domain III is seen in 1FNM but disordered in the most of other PDB entries
    1. Thermus thermophilus [TaxId: 274] [54983] (12)
      1. 2bv3
        automatically matched to d1fnma4
        complexed with gnp, mg; mutant
        
        region a:404-478 [129240]
      2. 2bv3
        automatically matched to d1dar_4
        complexed with gnp, mg; mutant
        
        region a:600-688 [129241]
      3. 2efg
        complexed with gdp
        
        region a:600-689 [39301]
      4. 2bm0
        automatically matched to d1fnma4
        complexed with gdp, mg; mutant
        
        region a:404-478 [128751]
      5. 2bm0
        automatically matched to d1dar_4
        complexed with gdp, mg; mutant
        
        region a:600-689 [128752]
      6. 1fnm
        complexed with gdp, mg; mutant
        
        region a:404-482 [39302]
        region a:600-688 [39303]
      7. 1dar
        complexed with gdp
        
        region a:600-689 [39300]
      8. 2bm1
        automatically matched to d1fnma4
        complexed with gdp, mg; mutant
        
        region a:404-478 [128756]
      9. 2bm1
        automatically matched to d1dar_4
        complexed with gdp, mg; mutant
        
        region a:600-688 [128757]
      10. 1efg
        complexed with gdp
        
        region a:600-689 [39305]
      11. 1elo
        
        region a:600-689 [39304]
      12. 1ktv
        
        region a:600-689 [91030]
        region b:600-689 [91034]
    2. Thermus thermophilus, EF-G-2 [TaxId: 274] [143371] (4)
      SQ Q5SI76 371-447! SQ Q5SI76 563-658
      TTHA1498
      1. 2dy1
        automatically matched to d1wdta5
        complexed with gtp, mg
        
        region a:378-454 [146610]
      2. 2dy1
        automatically matched to d1wdta4
        complexed with gtp, mg
        
        region a:570-665 [146611]
      3. 1wdt
        complexed with gtp, mg
        
        region a:570-665 [120914]
      4. 1wdt
        complexed with gtp, mg
        
        region a:378-454 [120915]
  2. Elongation factor 2 (eEF-2) [82677]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82678] (41)
      SQ P32324
      1. 1n0u
        complexed with so1
        
        region a:482-560 [79760]
        region a:726-842 [79761]
      2. 1u2r
        complexed with apr, dde, gdp, mg, so1
        
        region a:482-560 [107620]
        region a:726-842 [107621]
      3. 1n0v
        
        region c:482-560 [79765]
        region c:726-842 [79766]
        region d:482-560 [79770]
        region d:726-842 [79771]
      4. 2npf
        automatically matched to d1n0ua4
        complexed with gdp, mou
        
        region a:482-560 [138435]
      5. 2npf
        automatically matched to d1n0ua5
        complexed with gdp, mou
        
        region a:726-842 [138436]
      6. 2npf
        automatically matched to d1n0ua4
        complexed with gdp, mou
        
        region b:482-560 [138440]
      7. 2npf
        automatically matched to d1n0ua5
        complexed with gdp, mou
        
        region b:726-842 [138441]
      8. 1zm9
        automatically matched to d1n0ua4
        complexed with dde, p34
        
        region a:482-560 [125339]
      9. 1zm9
        automatically matched to d1n0ua5
        complexed with dde, p34
        
        region a:726-842 [125340]
      10. 1zm9
        automatically matched to d1n0ua4
        complexed with dde, p34
        
        region c:482-560 [125345]
      11. 1zm9
        automatically matched to d1n0ua5
        complexed with dde, p34
        
        region c:726-842 [125346]
      12. 1zm9
        automatically matched to d1n0ua4
        complexed with dde, p34
        
        region e:482-560 [125351]
      13. 1zm9
        automatically matched to d1n0ua5
        complexed with dde, p34
        
        region e:726-842 [125352]
      14. 1zm4
        automatically matched to d1n0ua4
        complexed with dde, tad
        
        region a:482-560 [125319]
      15. 1zm4
        automatically matched to d1n0ua5
        complexed with dde, tad
        
        region a:726-842 [125320]
      16. 1zm4
        automatically matched to d1n0ua4
        complexed with dde, tad
        
        region c:482-560 [125325]
      17. 1zm4
        automatically matched to d1n0ua5
        complexed with dde, tad
        
        region c:726-842 [125326]
      18. 1zm4
        automatically matched to d1n0ua4
        complexed with dde, tad
        
        region e:482-560 [125331]
      19. 1zm4
        automatically matched to d1n0ua5
        complexed with dde, tad
        
        region e:726-842 [125332]
      20. 2e1r
        automatically matched to d1n0ua4
        complexed with gdp, sod
        
        region a:482-560 [131969]
      21. 2e1r
        automatically matched to d1n0ua5
        complexed with gdp, sod
        
        region a:726-842 [131970]
      22. 1zm3
        automatically matched to d1n0ua4
        complexed with dde
        
        region a:482-560 [125301]
      23. 1zm3
        automatically matched to d1n0ua5
        complexed with dde
        
        region a:726-842 [125302]
      24. 1zm3
        automatically matched to d1n0ua4
        complexed with dde
        
        region c:482-560 [125307]
      25. 1zm3
        automatically matched to d1n0ua5
        complexed with dde
        
        region c:726-842 [125308]
      26. 1zm3
        automatically matched to d1n0ua4
        complexed with dde
        
        region e:482-560 [125313]
      27. 1zm3
        automatically matched to d1n0ua5
        complexed with dde
        
        region e:726-842 [125314]
      28. 1zm2
        automatically matched to d1n0ua4
        complexed with apr, dde
        
        region a:482-560 [125283]
      29. 1zm2
        automatically matched to d1n0ua5
        complexed with apr, dde
        
        region a:726-842 [125284]
      30. 1zm2
        automatically matched to d1n0ua4
        complexed with apr, dde
        
        region c:482-560 [125289]
      31. 1zm2
        automatically matched to d1n0ua5
        complexed with apr, dde
        
        region c:726-842 [125290]
      32. 1zm2
        automatically matched to d1n0ua4
        complexed with apr, dde
        
        region e:482-560 [125295]
      33. 1zm2
        automatically matched to d1n0ua5
        complexed with apr, dde
        
        region e:726-842 [125296]
      34. 2p8z
        automatically matched to d1n0ua4
        complexed with apr, dde, gnp, so1
        
        region t:482-560 [139554]
      35. 2p8z
        automatically matched to d1n0ua5
        complexed with apr, dde, gnp, so1
        
        region t:730-842 [139555]
      36. 2p8x
        automatically matched to d1n0ua4
        complexed with apr, dde, gnp
        
        region t:482-560 [139544]
      37. 2p8x
        automatically matched to d1n0ua5
        complexed with apr, dde, gnp
        
        region t:730-842 [139545]
      38. 2p8y
        automatically matched to d1n0ua4
        complexed with apr, dde, gdp, so1
        
        region t:482-560 [139549]
      39. 2p8y
        automatically matched to d1n0ua5
        complexed with apr, dde, gdp, so1
        
        region t:730-842 [139550]
      40. 2p8w
        automatically matched to d1n0ua4
        complexed with gnp
        
        region t:482-560 [139539]
      41. 2p8w
        automatically matched to d1n0ua5
        complexed with gnp
        
        region t:730-842 [139540]
2. YigZ C-terminal domain-like [102991] (2)
  similar to EF-G domain V; N-terminal domain shares structural similarity with the EF-G domain IV
  1. Hypothetical protein YigZ, C-terminal domain [102992]
    1. Escherichia coli [TaxId: 562] [102993] (1)
      1. 1vi7
        structural genomics
        
        region a:138-208 [100741]
  2. Hypothetical protein TTHA1053, C-terminal domain [143372]
    1. Thermus thermophilus [TaxId: 274] [143373] (1)
      SQ Q5SJF5 125-191
      1. 2cve
        complexed with tla
        
        region a:125-191 [130870]
3. Hypothetical protein AF0491, C-terminal domain [110976] (1)
  1. Hypothetical protein AF0491, C-terminal domain [110977]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [110978] (2)
      SQ O29759
      1. 1t95
        
        region a:162-234 [106707]
      2. 1p9q
        Structural genomics target
        
        region c:162-234 [104095]
eEF-1beta-like [54984] (1)
uperfamily
1. eEF-1beta-like [54985] (3)
  1. Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta [54986]
    1. Human (Homo sapiens) [TaxId: 9606] [54987] (1)
      1. 1b64
        
        chain a [39306]
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [54988] (6)
      1. 1f60
        
        chain b [39307]
      2. 2b7c
        automatically matched to 2B7B B:1117-1206
        mutant
        
        region b:1117-1206 [144964]
      3. 1g7c
        complexed with 5gp
        
        chain b [39308]
      4. 1ije
        complexed with gdp
        
        chain b [62488]
      5. 1ijf
        complexed with gdp, mg
        
        chain b [62492]
      6. 2b7b
        complexed with gdp; mutant
        
        region b:1117-1206 [144963]
  2. aEF-1beta [54989]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [54990] (1)
      1. 1gh8
        
        chain a [39309]
eEF1-gamma domain [89942] (1)
elaborated with additional structures
uperfamily
1. eEF1-gamma domain [89943] (1)
  1. Elongation factor 1-gamma C-terminal domain [89944]
    1. Human (Homo sapiens) [TaxId: 9606] [89945] (1)
      1. 1pbu
        mutant
        
        chain a [88030]
Anticodon-binding domain of PheRS [54991] (1)
uperfamily
1. Anticodon-binding domain of PheRS [54992] (1)
  1. Phenylalanyl-tRNA synthetase [54993]
    1. Thermus thermophilus [TaxId: 274] [54994] (9)
      identical sequence to Thermus aquaticus, TaxId: 271
      1. 1jjc
        complexed with fa5, mn, so4
        
        region b:682-785 [66762]
      2. 2aly
        automatically matched to d1eiyb4
        complexed with mn, so4, ysa
        
        region b:682-785 [126992]
      3. 1pys
        complexed with mg
        
        region b:682-785 [39310]
      4. 2amc
        automatically matched to d1eiyb4
        complexed with mg, so4, tyr
        
        region b:682-785 [127007]
      5. 2akw
        automatically matched to d1eiyb4
        complexed with 200, mn, so4
        
        region b:682-785 [126942]
      6. 1b7y
        
        region b:682-775 [39311]
      7. 2iy5
        automatically matched to d1eiyb4
        complexed with fya, mg
        
        region b:682-781 [137798]
      8. 1b70
        
        region b:682-775 [39312]
      9. 1eiy
        
        region b:682-785 [39313]
Ribosomal protein S6 [54995] (1)
uperfamily
1. Ribosomal protein S6 [54996] (4)
  1. Ribosomal protein S6 [54997]
    1. Thermus thermophilus [TaxId: 274] [54998] (54)
      SQ P23370
      1. 1lou
        mutant
        
        chain a [39323]
      2. 1ris
        
        chain a [39314]
      3. 2bvz
        mutant
        
        region a:1-98 [146221]
      4. 2bxj
        mutant
        
        region a:1-99 [146222]
      5. 2bxj
        automatically matched to 2BXJ A:1-99
        mutant
        
        region b:1-99 [146223]
      6. 2uub
        automatically matched to d1fjgf_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region f:1-101 [139938]
      7. 2vqe
        automatically matched to d1fjgf_
        complexed with k, mg, par, tm2, zn
        
        region f:1-101 [153430]
      8. 1fjg
        complexed with mg, par, scm, sry, zn
        
        chain f [39316]
      9. 2vqf
        automatically matched to d1fjgf_
        complexed with k, mg, par, tm2, zn
        
        region f:1-101 [153449]
      10. 1j5e
        complexed with unx, zn
        
        chain f [71549]
      11. 2uxc
        automatically matched to d1fjgf_
        complexed with k, mg, par, zn
        
        region f:1-101 [140009]
      12. 2uuc
        automatically matched to d1fjgf_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region f:1-101 [139958]
      13. 2uua
        automatically matched to d1fjgf_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region f:1-101 [139918]
      14. 1xmq
        complexed with mg, par, t6a, zn
        
        chain f [115535]
      15. 1n32
        complexed with mg, par, psu, zn
        
        chain f [79875]
      16. 2uu9
        automatically matched to d1fjgf_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region f:1-101 [139898]
      17. 1xnr
        complexed with mg, par, zn
        
        chain f [115631]
      18. 1xnq
        complexed with mg, par, zn
        
        chain f [115609]
      19. 1hr0
        complexed with mg, zn
        
        chain f [39317]
      20. 1hnz
        complexed with hyg, mg, zn
        
        chain f [39318]
      21. 2j02
        automatically matched to d1fjgf_
        complexed with 5mu, mg, par, zn
        
        region f:1-101 [137871]
      22. 2j00
        automatically matched to d1fjgf_
        complexed with 5mu, mg, par, zn
        
        region f:1-101 [137844]
      23. 2uxd
        automatically matched to d1fjgf_
        complexed with k, mg, par, zn
        
        region f:1-101 [152286]
      24. 1xmo
        complexed with mg, mnu, par, t6a, zn
        
        chain f [115505]
      25. 1hnw
        complexed with mg, tac, zn
        
        chain f [39319]
      26. 2e5l
        automatically matched to d1fjgf_
        complexed with zn
        
        region f:1-101 [132030]
      27. 3d5a
        automatically matched to d1fjgf_
        complexed with mg, zn
        
        region f:1-101 [157340]
      28. 3d5c
        automatically matched to d1fjgf_
        complexed with mg, zn
        
        region f:1-101 [157370]
      29. 1i94
        complexed with mg, wo2, zn
        
        chain f [61997]
      30. 1hnx
        complexed with mg, pcy, zn
        
        chain f [39320]
      31. 1n33
        complexed with mg, par, psu, zn
        
        chain f [79897]
      32. 2hhh
        automatically matched to d1fjgf_
        complexed with ksg
        
        region f:1-101 [136482]
      33. 1i96
        complexed with mg, wo2, zn
        
        chain f [62041]
      34. 2uxb
        automatically matched to d1fjgf_
        complexed with k, mg, par, zn
        
        region f:1-101 [152267]
      35. 1n34
        complexed with zn
        
        chain f [79919]
      36. 2v46
        automatically matched to d1fjgf_
        complexed with 5mu, mg, zn
        
        region f:1-101 [152488]
      37. 2v48
        automatically matched to d1fjgf_
        complexed with 5mu, mg, zn
        
        region f:1-101 [152524]
      38. 1i97
        complexed with mg, tac, wo2, zn
        
        chain f [62064]
      39. 1n36
        complexed with zn
        
        chain f [79942]
      40. 1i95
        complexed with ede, mg, wo2, zn
        
        chain f [62019]
      41. 2f4v
        automatically matched to d1fjgf_
        complexed with ab9, d2c, k, mg, zn
        
        region f:1-101 [132943]
      42. 2qnh
        automatically matched to d1fjgf_
        complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
        
        region g:1-101 [150930]
      43. 2hgp
        automatically matched to d1fjgf_
        
        region i:1-101 [136426]
      44. 2hgi
        automatically matched to d1fjgf_
        
        region i:1-101 [136405]
      45. 2hgr
        automatically matched to d1fjgf_
        
        region i:1-101 [136447]
      46. 2ow8
        automatically matched to d1fjgf_
        complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
        
        region g:1-101 [139404]
      47. 1yl4
        automatically matched to d1fjgf_
        
        region i:1-101 [123602]
      48. 2b64
        automatically matched to d1fjgf_
        complexed with psu, yyg
        
        region f:1-101 [127938]
      49. 2b9o
        automatically matched to d1fjgf_
        complexed with psu, yyg
        
        region f:1-101 [128168]
      50. 2b9m
        automatically matched to d1fjgf_
        complexed with psu, yyg
        
        region f:1-101 [128131]
      51. 1cqm
        mutant engineered for aggregation
        
        chain a [39321]
        chain b [39322]
      52. 1cqn
        mutant engineered for aggregation
        
        chain a [39324]
        chain b [39325]
      53. 1qjh
        mutant engineered for aggregation
        
        chain a [39326]
      54. 1g1x
        
        chain a [39327]
        chain f [39328]
    2. Thermotoga maritima [TaxId: 2336] [117978] (1)
      SQ Q9WZ72
      1. 1vmb
        Structural genomics target
        complexed with edo
        
        chain a [113672]
    3. Escherichia coli [TaxId: 562] [160317] (24)
      SQ P02358 1-100
      1. 2qal
        automatically matched to 2AVY F:1-100
        complexed with mg, nmy
        
        region f:1-100 [150219]
      2. 2qan
        automatically matched to 2AVY F:1-100
        complexed with mg, nmy
        
        region f:1-100 [150273]
      3. 2qbf
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [150493]
      4. 2qbd
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [150439]
      5. 1vs5
        automatically matched to 2AVY F:1-100
        complexed with ksg, mg
        
        region f:1-100 [144441]
      6. 3df1
        automatically matched to 2AVY F:1-100
        complexed with hyg, mg
        
        region f:1-100 [157608]
      7. 3df3
        automatically matched to 2AVY F:1-100
        complexed with hyg, mg
        
        region f:1-100 [157662]
      8. 1vs7
        automatically matched to 2AVY F:1-100
        complexed with ksg, mg
        
        region f:1-100 [144482]
      9. 2qoy
        automatically matched to 2AVY F:1-100
        complexed with mg, nmy, scm
        
        region f:1-100 [151096]
      10. 2qp0
        automatically matched to 2AVY F:1-100
        complexed with mg, nmy, scm
        
        region f:1-100 [151149]
      11. 2avy
        Representative structure
        complexed with mg
        
        region f:1-100 [144848]
      12. 2aw7
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [144891]
      13. 2qb9
        automatically matched to 2AVY F:1-100
        complexed with lll, mg
        
        region f:1-100 [150333]
      14. 2qbb
        automatically matched to 2AVY F:1-100
        complexed with lll, mg
        
        region f:1-100 [150386]
      15. 2i2p
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [145426]
      16. 2i2u
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [145468]
      17. 2qbh
        automatically matched to 2AVY F:1-100
        complexed with lll, mg
        
        region f:1-100 [150547]
      18. 2qbj
        automatically matched to 2AVY F:1-100
        complexed with lll, mg
        
        region f:1-100 [150601]
      19. 2qou
        automatically matched to 2AVY F:1-100
        complexed with mg, scm
        
        region f:1-100 [150990]
      20. 2qow
        automatically matched to 2AVY F:1-100
        complexed with mg, scm
        
        region f:1-100 [151043]
      21. 2z4m
        automatically matched to 2AVY F:1-100
        complexed with mg, par
        
        region f:1-100 [154111]
      22. 2vho
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [153128]
      23. 2z4k
        automatically matched to 2AVY F:1-100
        complexed with mg, par
        
        region f:1-100 [154057]
      24. 2vhp
        automatically matched to 2AVY F:1-100
        complexed with mg
        
        region f:1-100 [153150]
    4. Aquifex aeolicus [TaxId: 63363] [160318] (1)
      SQ O66474 3-108
      1. 2j5a
        complexed with na
        
        region a:3-108 [147886]
Ribosomal protein S10 [54999] (1)
uperfamily
1. Ribosomal protein S10 [55000] (2)
  1. Ribosomal protein S10 [55001]
    1. Thermus thermophilus [TaxId: 274] [55002] (45)
      SQ P80375
      1. 2uub
        automatically matched to d1fjgj_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region j:3-100 [139941]
      2. 2vqe
        automatically matched to d1fjgj_
        complexed with k, mg, par, tm2, zn
        
        region j:3-100 [153434]
      3. 1fjg
        complexed with mg, par, scm, sry, zn
        
        chain j [39330]
      4. 2vqf
        automatically matched to d1fjgj_
        complexed with k, mg, par, tm2, zn
        
        region j:3-100 [153453]
      5. 1j5e
        complexed with unx, zn
        
        chain j [71553]
      6. 2uxc
        automatically matched to d1fjgj_
        complexed with k, mg, par, zn
        
        region j:3-100 [140013]
      7. 2uuc
        automatically matched to d1fjgj_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region j:3-100 [139961]
      8. 2uua
        automatically matched to d1fjgj_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region j:3-100 [139921]
      9. 1xmq
        complexed with mg, par, t6a, zn
        
        chain j [115539]
      10. 1n32
        complexed with mg, par, psu, zn
        
        chain j [79879]
      11. 2uu9
        automatically matched to d1fjgj_
        complexed with 6mz, cm0, k, mg, par, zn
        
        region j:3-100 [139901]
      12. 1xnq
        complexed with mg, par, zn
        
        chain j [115613]
      13. 1xnr
        complexed with mg, par, zn
        
        chain j [115635]
      14. 1hr0
        complexed with mg, zn
        
        chain j [39331]
      15. 1hnz
        complexed with hyg, mg, zn
        
        chain j [39332]
      16. 2j02
        automatically matched to d1fjgj_
        complexed with 5mu, mg, par, zn
        
        region j:3-100 [137875]
      17. 2j00
        automatically matched to d1fjgj_
        complexed with 5mu, mg, par, zn
        
        region j:3-100 [137848]
      18. 2uxd
        automatically matched to d1fjgj_
        complexed with k, mg, par, zn
        
        region j:3-100 [152290]
      19. 1xmo
        complexed with mg, mnu, par, t6a, zn
        
        chain j [115509]
      20. 1hnw
        complexed with mg, tac, zn
        
        chain j [39333]
      21. 2e5l
        automatically matched to d1fjgj_
        complexed with zn
        
        region j:3-100 [132034]
      22. 3d5a
        automatically matched to d1fjgj_
        complexed with mg, zn
        
        region j:3-100 [157344]
      23. 3d5c
        automatically matched to d1fjgj_
        complexed with mg, zn
        
        region j:3-100 [157374]
      24. 1i94
        complexed with mg, wo2, zn
        
        chain j [62001]
      25. 1hnx
        complexed with mg, pcy, zn
        
        chain j [39334]
      26. 1n33
        complexed with mg, par, psu, zn
        
        chain j [79901]
      27. 2hhh
        automatically matched to d1fjgj_
        complexed with ksg
        
        region j:3-100 [136486]
      28. 1i96
        complexed with mg, wo2, zn
        
        chain j [62045]
      29. 2uxb
        automatically matched to d1fjgj_
        complexed with k, mg, par, zn
        
        region j:3-100 [152271]
      30. 1n34
        complexed with zn
        
        chain j [79923]
      31. 2v46
        automatically matched to d1fjgj_
        complexed with 5mu, mg, zn
        
        region j:3-100 [152492]
      32. 2v48
        automatically matched to d1fjgj_
        complexed with 5mu, mg, zn
        
        region j:3-100 [152528]
      33. 1i97
        complexed with mg, tac, wo2, zn
        
        chain j [62068]
      34. 1n36
        complexed with zn
        
        chain j [79946]
      35. 1i95
        complexed with ede, mg, wo2, zn
        
        chain j [62023]
      36. 2f4v
        automatically matched to d1fjgj_
        complexed with ab9, d2c, k, mg, zn
        
        region j:3-100 [132947]
      37. 2qnh
        automatically matched to d1fjgj_
        complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
        
        region k:3-100 [150934]
      38. 2hgp
        automatically matched to d1fjgj_
        
        region m:3-100 [136429]
      39. 2hgi
        automatically matched to d1fjgj_
        
        region m:3-100 [136408]
      40. 2hgr
        automatically matched to d1fjgj_
        
        region m:3-100 [136450]
      41. 2ow8
        automatically matched to d1fjgj_
        complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
        
        region k:3-100 [139408]
      42. 1yl4
        automatically matched to d1fjgj_
        
        region m:3-100 [123606]
      43. 2b64
        automatically matched to d1fjgj_
        complexed with psu, yyg
        
        region j:3-100 [127942]
      44. 2b9o
        automatically matched to d1fjgj_
        complexed with psu, yyg
        
        region j:3-100 [128172]
      45. 2b9m
        automatically matched to d1fjgj_
        complexed with psu, yyg
        
        region j:3-100 [128135]
    2. Escherichia coli [TaxId: 562] [160319] (24)
      SQ P0A7R5 5-102
      1. 2qal
        automatically matched to 2AVY J:5-102
        complexed with mg, nmy
        
        region j:5-102 [150223]
      2. 2qan
        automatically matched to 2AVY J:5-102
        complexed with mg, nmy
        
        region j:5-102 [150277]
      3. 2qbf
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [150497]
      4. 2qbd
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [150443]
      5. 1vs5
        automatically matched to 2AVY J:5-102
        complexed with ksg, mg
        
        region j:5-102 [144444]
      6. 3df1
        automatically matched to 2AVY J:5-102
        complexed with hyg, mg
        
        region j:5-102 [157612]
      7. 3df3
        automatically matched to 2AVY J:5-102
        complexed with hyg, mg
        
        region j:5-102 [157666]
      8. 1vs7
        automatically matched to 2AVY J:5-102
        complexed with ksg, mg
        
        region j:5-102 [144485]
      9. 2qoy
        automatically matched to 2AVY J:5-102
        complexed with mg, nmy, scm
        
        region j:5-102 [151100]
      10. 2qp0
        automatically matched to 2AVY J:5-102
        complexed with mg, nmy, scm
        
        region j:5-102 [151153]
      11. 2avy
        Representative structure
        complexed with mg
        
        region j:5-102 [144851]
      12. 2aw7
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [144894]
      13. 2qb9
        automatically matched to 2AVY J:5-102
        complexed with lll, mg
        
        region j:5-102 [150337]
      14. 2qbb
        automatically matched to 2AVY J:5-102
        complexed with lll, mg
        
        region j:5-102 [150390]
      15. 2i2p
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [145429]
      16. 2i2u
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [145471]
      17. 2qbh
        automatically matched to 2AVY J:5-102
        complexed with lll, mg
        
        region j:5-102 [150551]
      18. 2qbj
        automatically matched to 2AVY J:5-102
        complexed with lll, mg
        
        region j:5-102 [150605]
      19. 2qou
        automatically matched to 2AVY J:5-102
        complexed with mg, scm
        
        region j:5-102 [150994]
      20. 2qow
        automatically matched to 2AVY J:5-102
        complexed with mg, scm
        
        region j:5-102 [151047]
      21. 2z4m
        automatically matched to 2AVY J:5-102
        complexed with mg, par
        
        region j:5-102 [154115]
      22. 2vho
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [153132]
      23. 2z4k
        automatically matched to 2AVY J:5-102
        complexed with mg, par
        
        region j:5-102 [154061]
      24. 2vhp
        automatically matched to 2AVY J:5-102
        complexed with mg
        
        region j:5-102 [153154]
N-utilization substance G protein NusG, N-terminal domain [82679] (1)
uperfamily
1. N-utilization substance G protein NusG, N-terminal domain [82680] (2)
  1. N-utilization substance G protein NusG, N-terminal domain [82681]
    1. Aquifex aeolicus [TaxId: 63363] [82682] (4)
      interrupted by an insert beta-sandwich domain
      1. 1m1h
        
        region a:5-50,a:132-186 [78416]
      2. 1npp
        complexed with ipa
        
        region a:5-50,a:132-190 [85973]
        region b:8-50,b:132-190 [85976]
        region c:10-50,c:132-190 [85979]
        region d:6-50,d:132-190 [85982]
      3. 1npr
        
        region a:7-50,a:132-190 [85986]
      4. 1m1g
        
        region a:9-50,a:132-190 [78405]
        region b:7-50,b:132-190 [78408]
        region c:5-50,c:132-190 [78411]
        region d:10-50,d:132-190 [78414]
    2. Thermus thermophilus [TaxId: 274] [102994] (1)
      1. 1nz8
        N-terminal domain (Ngn) only
        
        chain a [92363]
PAP/Archaeal CCA-adding enzyme, C-terminal domain [55003] (2)
uperfamily
1. Poly(A) polymerase, PAP, C-terminal domain [55004] (2)
  1. Poly(A) polymerase, PAP, C-terminal domain [55005]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55006] (7)
      1. 2q66
        automatically matched to d1fa0b1
        complexed with atp, edo, mg; mutant
        
        region a:352-529 [150059]
      2. 2hhp
        automatically matched to d1fa0b1
        complexed with flc, mg
        
        region a:352-530 [136505]
      3. 3c66
        automatically matched to d1fa0b1
        complexed with gol, mes
        
        region a:352-530 [155971]
      4. 3c66
        automatically matched to d1fa0b1
        complexed with gol, mes
        
        region b:352-530 [155974]
      5. 2o1p
        automatically matched to d1fa0b1
        
        region a:352-530 [138877]
      6. 2o1p
        automatically matched to d1fa0b1
        
        region b:352-529 [138880]
      7. 1fa0
        complexed with 3ad, 3at, mn, pop
        
        region a:352-523 [39335]
        region b:352-530 [39336]
    2. Cow (Bos taurus) [TaxId: 9913] [55007] (3)
      SQ P25500 18-497
      1. 1q79
        complexed with 3at, gol, mn
        
        region a:365-498 [104550]
      2. 1f5a
        complexed with 3at, 3po, mn; mutant
        
        region a:365-498 [39337]
      3. 1q78
        complexed with 3at, mg
        
        region a:365-498 [104547]
2. Archaeal tRNA CCA-adding enzyme [102995] (1)
  decorated fold with a large insertion
  1. tRNA nucleotidyltransferase, C-terminal domain [102996]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102997] (28)
      SQ O28126
      1. 1r89
        complexed with cl, ctp, mg, mn, na
        
        region a:258-437 [97223]
      2. 1uet
        complexed with act, ca, mg
        
        region a:258-437 [99274]
      3. 1r8c
        complexed with mn, na, utp
        
        region a:258-437 [97232]
      4. 1r8b
        complexed with atp, cl, mg, mn, na
        
        region a:258-437 [97229]
      5. 1ueu
        complexed with act, ctp, mg
        
        region a:258-437 [99277]
      6. 1tfw
        complexed with atp, mg
        
        region a:258-437 [106864]
        region b:258-437 [106867]
        region c:258-437 [106870]
        region d:258-437 [106873]
      7. 1r8a
        complexed with mn, na
        
        region a:258-437 [97226]
      8. 2dra
        automatically matched to d1r89a3
        complexed with atp, mg, so4
        
        region a:258-437 [131668]
      9. 2dvi
        automatically matched to d1r89a3
        complexed with ctp, mg, so4
        
        region a:262-437 [131792]
      10. 2dr8
        automatically matched to d1r89a3
        complexed with ctp, mg, so4
        
        region a:258-437 [131662]
      11. 1uev
        complexed with atp, ca, mg
        
        region a:258-437 [99280]
      12. 2zh6
        automatically matched to d1r89a3
        complexed with atp, mg, so4
        
        region a:258-437 [154450]
      13. 2zh2
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154438]
      14. 2zh3
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154441]
      15. 2zh4
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154444]
      16. 2zh5
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154447]
      17. 2zh8
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154456]
      18. 2dr7
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [131659]
      19. 2dr9
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [131665]
      20. 2drb
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [131671]
      21. 2zh1
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154435]
      22. 2dr5
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [131656]
      23. 2zh9
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154459]
      24. 2zhb
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154465]
      25. 2zh7
        automatically matched to d1r89a3
        complexed with so4
        
        region a:258-437 [154453]
      26. 2zha
        automatically matched to d1r89a3
        complexed with ctp, mg, so4
        
        region a:258-437 [154462]
      27. 1tfy
        complexed with ctp, mg
        
        region a:258-437 [106876]
        region b:258-437 [106879]
        region c:258-437 [106882]
        region d:258-437 [106885]
      28. 1sz1
        complexed with 1ma, 2mg, 5mc, 5mu, 7mg, h2u, m2g, omc, omg, psu, yyg
        
        region a:258-437 [106135]
        region b:258-437 [106138]
HMA, heavy metal-associated domain [55008] (1)
uperfamily
1. HMA, heavy metal-associated domain [55009] (12)
  1. Mercuric ion binding protein MerP [55010]
    1. Shigella flexneri [TaxId: 623] [55011] (3)
      1. 1afj
        complexed with hg
        
        chain a [39338]
      2. 2hqi
        
        chain a [39340]
      3. 1afi
        
        chain a [39339]
    2. Ralstonia metallidurans CH34 [TaxId: 266264] [110979] (1)
      SQ O66016 Q58AI1 Q5NUU9 Q6UP70 Q7BRH5 Q7BRH6 Q7X3A5 # 100% identity
      1. 1osd
        
        chain a [104022]
        chain b [104023]
  2. Potential copper-translocating P-type ATPase CopA (YvgX) [75441]
    duplication: contains tandem repeat of two HMA domains in the N-terminal region
    1. Bacillus subtilis [TaxId: 1423] [75442] (6)
      1. 1p6t
        mutant
        
        region a:1-72 [94188]
        region a:73-151 [94189]
      2. 1kqk
        domain 2
        complexed with cu1
        
        chain a [72880]
      3. 1jww
        domain 2
        
        chain a [71919]
      4. 1oq3
        domain 1
        mutant
        
        chain a [93412]
      5. 1opz
        domain 1
        mutant
        
        chain a [93407]
      6. 1oq6
        domain 1
        complexed with cu; mutant
        
        chain a [93414]
  3. Metal ion-transporting ATPase ZntA, N-terminal domain [82683]
    1. Escherichia coli [TaxId: 562] [82684] (2)
      1. 1mwz
        complexed with zn
        
        chain a [79617]
      2. 1mwy
        
        chain a [79616]
  4. Copper transporter domain ccc2a [64279]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64280] (3)
      1. 2ggp
        automatically matched to d1fvqa_
        complexed with cu1
        
        region b:1-72 [135155]
      2. 1fvq
        apo form
        
        chain a [60046]
      3. 1fvs
        Cu(I) form
        complexed with cu
        
        chain a [60049]
  5. Menkes copper-transporting ATPase [55012]
    1. Human (Homo sapiens) [TaxId: 9606] [55013] (7)
      1. 2aw0
        4th metal-binding domain
        complexed with ag
        
        chain a [39341]
      2. 1aw0
        4th metal-binding domain
        
        chain a [39342]
      3. 1q8l
        2nd metal-binding domain
        
        chain a [96214]
      4. 1s6u
        2nd metal-binding domain
        complexed with cu1
        
        chain a [98608]
      5. 1s6o
        2nd metal-binding domain
        
        chain a [98597]
      6. 1kvj
        1st metal-binding domain
        complexed with cu1
        
        chain a [91043]
      7. 1kvi
        1st metal-binding domain
        
        chain a [91042]
  6. ATX1 metallochaperone protein (ATOX1) [55014]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55015] (5)
      1. 1cc8
        
        chain a [39343]
      2. 1cc7
        
        chain a [39344]
      3. 2ggp
        automatically matched to d1fd8a_
        complexed with cu1
        
        region a:1-73 [135154]
      4. 1fd8
        Cu(I) form
        complexed with cu1
        
        chain a [59770]
      5. 1fes
        apo form
        
        chain a [59800]
    2. Human (Homo sapiens), HAH1 [TaxId: 9606] [55016] (5)
      SQ O00244
      1. 1fe0
        complexed with cd, so4, suc
        
        chain a [39345]
        chain b [39346]
      2. 1fe4
        complexed with hg, ium, so4, suc
        
        chain a [39347]
        chain b [39348]
      3. 1fee
        complexed with cu1, so4, suc
        
        chain a [39349]
        chain b [39350]
      4. 1tl5
        
        chain a [112500]
      5. 1tl4
        complexed with cu1
        
        chain a [112499]
  7. Copper chaperone [55017]
    1. Enterococcus hirae [TaxId: 1354] [55018] (1)
      1. 1cpz
        mutant
        
        chain a [39351]
    2. Bacillus subtilis, CopZ [TaxId: 1423] [69736] (4)
      1. 2qif
        automatically matched to d1k0va_
        complexed with act, ca, cu1, gol
        
        region a:1-69 [150808]
      2. 2qif
        automatically matched to d1k0va_
        complexed with act, ca, cu1, gol
        
        region b:1-68 [150809]
      3. 1k0v
        complexed with cu1
        
        chain a [67986]
      4. 1p8g
        
        chain a [94360]
    3. Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148] [102998] (1)
      1. 1sb6
        
        chain a [98790]
  8. Copper chaperone for superoxide dismutase, N-terminal domain [55019]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55020] (2)
      1. 1qup
        
        region a:2-73 [39352]
        region b:5-73 [39353]
      2. 1jk9
        complexed with so4, zn; mutant
        
        region b:3-73 [63151]
        region d:3-73 [63154]
Urease metallochaperone UreE, C-terminal domain [69737] (1)
uperfamily
1. Urease metallochaperone UreE, C-terminal domain [69738] (2)
  1. Urease metallochaperone UreE, C-terminal domain [69739]
    1. Klebsiella aerogenes [TaxId: 28451] [69740] (3)
      1. 1gmu
        mutant
        
        region a:71-138 [65336]
        region b:71-138 [65338]
        region c:71-140 [65340]
        region d:71-138 [65342]
      2. 1gmw
        complexed with cu; mutant
        
        region a:71-138 [65348]
        region b:71-138 [65350]
        region c:71-138 [65352]
        region d:71-138 [65354]
      3. 1gmv
        mutant
        
        region a:71-138 [65344]
        region b:71-137 [65346]
    2. Bacillus pasteurii [TaxId: 1474] [69741] (2)
      1. 1ear
        complexed with zn; mutant
        
        region a:75-142 [64876]
      2. 1eb0
        complexed with zn
        
        region a:75-143 [64891]
ACT-like [55021] (14)
regulatory domain linked to a wide range of metabolic enzymes
uperfamily
1. Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain [55022] (2)
  1. Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain [55023]
    1. Escherichia coli [TaxId: 562] [55024] (18)
      1. 1sc6
        automatically matched to d1psda3
        complexed with nad; mutant
        
        region a:327-410 [118934]
      2. 1sc6
        automatically matched to d1psda3
        complexed with nad; mutant
        
        region b:327-410 [118937]
      3. 1sc6
        automatically matched to d1psda3
        complexed with nad; mutant
        
        region c:327-410 [118940]
      4. 1sc6
        automatically matched to d1psda3
        complexed with nad; mutant
        
        region d:327-410 [118943]
      5. 1yba
        automatically matched to d1psda3
        complexed with akg, nad, po4
        
        region a:327-410 [122874]
      6. 1yba
        automatically matched to d1psda3
        complexed with akg, nad, po4
        
        region b:327-410 [122877]
      7. 1yba
        automatically matched to d1psda3
        complexed with akg, nad, po4
        
        region c:327-410 [122880]
      8. 1yba
        automatically matched to d1psda3
        complexed with akg, nad, po4
        
        region d:327-410 [122883]
      9. 2p9c
        automatically matched to d1psda3
        complexed with nai, ser; mutant
        
        region a:327-410 [139558]
      10. 2p9c
        automatically matched to d1psda3
        complexed with nai, ser; mutant
        
        region b:327-410 [139561]
      11. 1psd
        complexed with nad
        
        region a:327-410 [39354]
        region b:327-410 [39355]
      12. 2p9e
        automatically matched to d1psda3
        complexed with cit, nai, po4, so4; mutant
        
        region a:327-410 [139564]
      13. 2p9e
        automatically matched to d1psda3
        complexed with cit, nai, po4, so4; mutant
        
        region b:327-410 [139567]
      14. 2p9e
        automatically matched to d1psda3
        complexed with cit, nai, po4, so4; mutant
        
        region c:327-410 [139570]
      15. 2p9e
        automatically matched to d1psda3
        complexed with cit, nai, po4, so4; mutant
        
        region d:327-410 [139573]
      16. 2p9g
        automatically matched to d1psda3
        complexed with nai, ser; mutant
        
        region a:327-410 [139576]
      17. 2p9g
        automatically matched to d1psda3
        complexed with nai, ser; mutant
        
        region b:327-410 [139579]
      18. 2pa3
        automatically matched to d1psda3
        complexed with nai, ser; mutant
        
        region a:327-410 [139640]
    2. Mycobacterium tuberculosis [TaxId: 1773] [143374] (2)
      SQ P0A544 451-528
      there is an intervening domain between the substrate-binding domain and this domain
      1. 1ygy
        complexed with tar
        
        region a:452-529 [123152]
      2. 1ygy
        automatically matched to 1YGY A:452-529
        complexed with tar
        
        region b:452-529 [123156]
2. Allosteric threonine deaminase C-terminal domain [55025] (1)
  1. Allosteric threonine deaminase C-terminal domain [55026]
    duplication: consists of two homologous domains
    1. Escherichia coli [TaxId: 562] [55027] (1)
      1. 1tdj
        CASP2
        complexed with plp
        
        region a:336-423 [39356]
        region a:424-514 [39357]
3. Phenylalanine metabolism regulatory domain [55028] (2)
  1. Phenylalanine hydroxylase N-terminal domain [55029]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55030] (2)
      1. 1phz
        complexed with fe; mutant
        
        region a:19-115 [39358]
      2. 2phm
        complexed with fe; mutant
        
        region a:19-115 [39359]
  2. Prephenate dehydratase C-terminal domain [160320]
    1. Staphylococcus aureus [TaxId: 1280] [160321] (2)
      SQ Q99SX2 185-264
      1. 2qmw
        complexed with act, edo, na, peg
        
        region a:185-264 [150900]
      2. 2qmw
        automatically matched to 2QMW A:185-264
        complexed with act, edo, na, peg
        
        region b:185-264 [150902]
4. Nickel responsive regulator NikR, C-terminal domain [102999] (2)
  1. Nickel responsive regulator NikR, C-terminal domain [103000]
    1. Escherichia coli [TaxId: 562] [103001] (21)
      1. 1q5y
        nickel-bound; C-terminal domain only
        complexed with egl, ni
        
        chain a [95950]
        chain b [95951]
        chain c [95952]
        chain d [95953]
      2. 3bkt
        automatically matched to d1q5vb2
        complexed with cu
        
        region a:50-131 [155364]
      3. 3bkt
        automatically matched to d1q5vb2
        complexed with cu
        
        region b:50-131 [155365]
      4. 3bkt
        automatically matched to d1q5vb2
        complexed with cu
        
        region c:51-131 [155366]
      5. 3bkt
        automatically matched to d1q5vb2
        complexed with cu
        
        region d:50-131 [155367]
      6. 3bkf
        automatically matched to d1q5vb2
        complexed with zn
        
        region a:49-131 [155353]
      7. 2hza
        automatically matched to d1q5vb2
        complexed with 3cm, ni
        
        region a:49-131 [136908]
      8. 2hza
        automatically matched to d1q5vb2
        complexed with 3cm, ni
        
        region b:49-131 [136910]
      9. 1q5v
        apo form
        
        region a:49-132 [95938]
        region b:49-133 [95940]
        region c:49-132 [95942]
        region d:49-132 [95944]
      10. 3bku
        automatically matched to d1q5vb2
        
        region a:51-131 [155368]
      11. 3bku
        automatically matched to d1q5vb2
        
        region b:49-131 [155369]
      12. 3bku
        automatically matched to d1q5vb2
        
        region c:51-131 [155370]
      13. 3bku
        automatically matched to d1q5vb2
        
        region d:50-131 [155371]
      14. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region a:49-131 [136917]
      15. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region b:49-131 [136919]
      16. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region c:49-131 [136921]
      17. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region d:49-131 [136923]
      18. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region e:49-131 [136925]
      19. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region f:49-131 [136927]
      20. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region g:49-131 [136929]
      21. 2hzv
        automatically matched to d1q5vb2
        complexed with k, ni
        
        region h:49-131 [136931]
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143375] (12)
      SQ O58316 51-132
      1. 2bj7
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, ni, pg4
        
        region a:51-132 [128609]
      2. 2bj7
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, ni, pg4
        
        region b:51-132 [128611]
      3. 2bj8
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, epe, ni, pg4
        
        region a:51-132 [128613]
      4. 2bj8
        automatically matched to 2BJ1 A:51-132
        complexed with cl, edo, epe, ni, pg4
        
        region b:51-132 [128615]
      5. 2bj3
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
        
        region a:51-132 [128601]
      6. 2bj3
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
        
        region b:51-132 [128603]
      7. 2bj3
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
        
        region c:51-132 [128605]
      8. 2bj3
        automatically matched to 2BJ1 A:51-132
        complexed with cl, mg
        
        region d:51-132 [128607]
      9. 2bj9
        automatically matched to 2BJ1 A:51-132
        complexed with ni, pg4, po4
        
        region a:51-132 [128617]
      10. 2bj9
        automatically matched to 2BJ1 A:51-132
        complexed with ni, pg4, po4
        
        region b:51-132 [128619]
      11. 2bj1
        complexed with cl, ni
        
        region a:51-132 [128597]
      12. 2bj1
        automatically matched to 2BJ1 A:51-132
        complexed with cl, ni
        
        region b:51-132 [128599]
5. Glycine cleavage system transcriptional repressor [110980] (1)
  tandem repeat of two ACT-like domains; swapped domain dimer
  1. putative transcriptional repressor VC2159 [110981]
    1. Vibrio cholerae [TaxId: 666] [110982] (1)
      SQ Q9KQ45
      1. 1u8s
        Structural genomics target
        
        region a:2-87 [107737]
        region a:88-180 [107738]
        region b:2-87 [107739]
        region b:88-180 [107740]
6. IlvH-like [143376] (3)
  Duplication: tandem repeat of two ACT-like domains; dimer, the N- and C-terminal domains have different dimerisation modes
  1. Acetolactate synthase small subunit, IlvH [143377]
    1. Thermotoga maritima [TaxId: 2336] [143378] (2)
      SQ Q9WZ19 5-82! SQ Q9WZ19 83-165
      1. 2fgc
        complexed with mg
        
        region a:105-187 [133428]
      2. 2fgc
        complexed with mg
        
        region a:27-104 [133429]
    2. Escherichia coli [TaxId: 562] [143379] (4)
      SQ P00894 2-77! SQ P00894 78-163
      1. 2f1f
        complexed with 1pe, mg, p33
        
        region a:2-77 [132760]
      2. 2f1f
        complexed with 1pe, mg, p33
        
        region a:78-163 [132761]
      3. 2f1f
        automatically matched to 2F1F A:2-77
        complexed with 1pe, mg, p33
        
        region b:2-77 [132762]
      4. 2f1f
        automatically matched to 2F1F A:78-163
        complexed with 1pe, mg, p33
        
        region b:78-158 [132763]
    3. Nitrosomonas europaea [TaxId: 915] [143380] (8)
      SQ Q82UZ2 1-77! SQ Q82UZ2 78-163
      1. 2pc6
        automatically matched to 2FGD A:78-163
        complexed with ca, sin
        
        region a:78-163 [139647]
      2. 2pc6
        automatically matched to 2FGD A:1-77
        complexed with ca, sin
        
        region a:1-77 [139648]
      3. 2pc6
        automatically matched to 2FGD A:78-163
        complexed with ca, sin
        
        region b:78-163 [139649]
      4. 2pc6
        automatically matched to 2FGD A:1-77
        complexed with ca, sin
        
        region b:1-77 [139650]
      5. 2pc6
        automatically matched to 2FGD A:78-163
        complexed with ca, sin
        
        region c:78-163 [139651]
      6. 2pc6
        automatically matched to 2FGD A:1-77
        complexed with ca, sin
        
        region c:1-77 [139652]
      7. 2pc6
        automatically matched to 2FGD A:78-163
        complexed with ca, sin
        
        region d:78-163 [139653]
      8. 2pc6
        automatically matched to 2FGD A:1-77
        complexed with ca, sin
        
        region d:1-77 [139654]
7. SP0238-like [143381] (1)
  stand-alone protein; dimer, the dimerization interface is formed by parallel packing of the subunit beta-sheets
  1. UPF0237 protein SP0238 [143382]
    1. Streptococcus pneumoniae [TaxId: 1313] [143383] (3)
      SQ P67382 1-83
      1. 1zpv
        complexed with k
        
        region a:1-83 [125475]
      2. 1zpv
        automatically matched to 1ZPV A:1-83
        complexed with k
        
        region b:1-83 [125476]
      3. 1zpv
        automatically matched to 1ZPV A:1-83
        complexed with k
        
        region c:1-83 [125477]
8. Atu0741-like [143384] (1)
  duplication: tandem repeat of two ACT-like domains; contains strand invasion of extra N-terminal strand into the C-terminal domain beta-sheet; dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein Atu0741 [143385]
    1. Agrobacterium tumefaciens [TaxId: 358] [143386] (2)
      SQ Q8UHE1 2-61! SQ Q8UHE1 62-127
      1. 1zhv
        
        region a:2-61 [125109]
      2. 1zhv
        
        region a:62-127 [125110]
9. VC0802-like [143387] (1)
  duplication: tandem repeat of two ACT-like domains; contains circular permutation (the C-terminal strand replacement with extra N-terminal strand); dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein VC0802 [143388]
    1. Vibrio cholerae [TaxId: 666] [143389] (8)
      SQ Q9KTT6 2-67! SQ Q9KTT6 68-131
      1. 1zvp
        
        region a:2-67 [125714]
      2. 1zvp
        
        region a:68-131 [125715]
      3. 1zvp
        automatically matched to 1ZVP A:2-67
        
        region b:2-67 [125716]
      4. 1zvp
        automatically matched to 1ZVP A:68-131
        
        region b:68-131 [125717]
      5. 1zvp
        automatically matched to 1ZVP A:2-67
        
        region c:2-67 [125718]
      6. 1zvp
        automatically matched to 1ZVP A:68-131
        
        region c:68-129 [125719]
      7. 1zvp
        automatically matched to 1ZVP A:2-67
        
        region d:2-67 [125720]
      8. 1zvp
        automatically matched to 1ZVP A:68-131
        
        region d:68-131 [125721]
10. Aspartokinase allosteric domain-like [143390] (3)
  duplication: tandem repeat of two ACT-like domains; similar subunit and oligomeric structures to the VC0802-like family
  1. Aspartokinase [143391]
    1. Methanococcus jannaschii [TaxId: 2190] [143392] (8)
      SQ Q57991 304-403! SQ Q57991 404-470
      1. 2hmf
        complexed with adp, asp, mg
        
        region a:404-470 [136574]
      2. 2hmf
        complexed with adp, asp, mg
        
        region a:304-403 [136575]
      3. 2hmf
        automatically matched to 2HMF A:404-470
        complexed with adp, asp, mg
        
        region b:404-470 [136577]
      4. 2hmf
        automatically matched to 2HMF A:304-403
        complexed with adp, asp, mg
        
        region b:304-403 [136578]
      5. 2hmf
        automatically matched to 2HMF A:404-470
        complexed with adp, asp, mg
        
        region c:404-470 [136580]
      6. 2hmf
        automatically matched to 2HMF A:304-403
        complexed with adp, asp, mg
        
        region c:304-403 [136581]
      7. 2hmf
        automatically matched to 2HMF A:404-470
        complexed with adp, asp, mg
        
        region d:404-470 [136583]
      8. 2hmf
        automatically matched to 2HMF A:304-403
        complexed with adp, asp, mg
        
        region d:304-403 [136584]
    2. Escherichia coli [TaxId: 562] [143393] (6)
      SQ P08660 295-385! SQ P08660 386-449
      Lysine-sensitive aspartokinase 3
      1. 2j0w
        complexed with adp, asp, cl, mg
        
        region a:295-385 [137924]
      2. 2j0w
        complexed with adp, asp, cl, mg
        
        region a:386-449 [137925]
      3. 2j0x
        automatically matched to 2J0W A:295-385
        complexed with asp, lys, po4
        
        region a:295-385 [137927]
      4. 2j0x
        automatically matched to 2J0W A:386-449
        complexed with asp, lys, po4
        
        region a:386-449 [137928]
      5. 2j0x
        automatically matched to 2J0W A:295-385
        complexed with asp, lys, po4
        
        region b:295-385 [137930]
      6. 2j0x
        automatically matched to 2J0W A:386-449
        complexed with asp, lys, po4
        
        region b:386-449 [137931]
    3. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [143394] (4)
      SQ Q9LYU8 388-478! SQ Q9LYU8 479-553
      1. 2cdq
        complexed with lys, sam, tar
        
        region a:329-419 [130291]
      2. 2cdq
        complexed with lys, sam, tar
        
        region a:420-494 [130292]
      3. 2cdq
        automatically matched to 2CDQ A:329-419
        complexed with lys, sam, tar
        
        region b:329-419 [130294]
      4. 2cdq
        automatically matched to 2CDQ A:420-494
        complexed with lys, sam, tar
        
        region b:420-494 [130295]
11. BT0572-like [143395] (1)
  duplication: tandem repeat of two ACT-like domains; dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein BT0572 [143396]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [143397] (4)
      SQ Q8AA93 1-70! SQ Q8AA93 71-141
      1. 2f06
        complexed with his
        
        region a:71-141 [132652]
      2. 2f06
        complexed with his
        
        region a:1-70 [132653]
      3. 2f06
        automatically matched to 2F06 A:71-141
        complexed with his
        
        region b:71-141 [132654]
      4. 2f06
        automatically matched to 2F06 A:1-70
        complexed with his
        
        region b:1-70 [132655]
12. AF1403 N-terminal domain-like [143398] (1)
  dimerizes with the formation of a single intersubunit beta-sheet
  1. Hypothetical protein AF1403, N-terminal domain [143399]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [143400] (3)
      SQ O28869 2-78
      1. 1y7p
        complexed with rip, zn
        
        region a:2-78 [122709]
      2. 1y7p
        automatically matched to 1Y7P A:2-78
        complexed with rip, zn
        
        region b:2-78 [122711]
      3. 1y7p
        automatically matched to 1Y7P A:2-78
        complexed with rip, zn
        
        region c:5-78 [122713]
13. NIL domain-like [160322] (4)
  Pfam 09383
  1. Methionine import ATP-binding protein MetN [160323]
    1. Vibrio parahaemolyticus [TaxId: 670] [160324] (2)
      SQ Q87RS1 248-344
      1. 2qrr
        complexed with cl
        
        region a:2-98 [151307]
      2. 2qrr
        automatically matched to 2QRR A:2-98
        complexed with cl
        
        region b:2-98 [151308]
    2. Escherichia coli [TaxId: 562] [160325] (6)
      SQ P30750 241-343! SQ P30750 247-343
      1. 3dhx
        complexed with iod
        
        region a:2-100 [157739]
      2. 3dhx
        automatically matched to 3DHX A:2-100
        complexed with iod
        
        region b:2-100 [157740]
      3. 3dhw
        
        region c:241-343 [157730]
      4. 3dhw
        automatically matched to 3DHW C:241-343
        
        region d:241-343 [157732]
      5. 3dhw
        automatically matched to 3DHW C:241-343
        
        region g:241-343 [157736]
      6. 3dhw
        automatically matched to 3DHW C:241-343
        
        region h:241-343 [157738]
  2. Methionine import ATP-binding protein MetN2 [160326]
    1. Enterococcus faecalis [TaxId: 1351] [160327] (1)
      SQ Q831K6 256-345
      1. 2qsw
        complexed with gol, zn
        
        region a:256-345 [151326]
    2. Staphylococcus aureus [TaxId: 1280] [160328] (3)
      SQ Q99VG8 247-341
      1. 3ced
        complexed with bu1
        
        region a:247-341 [156521]
      2. 3ced
        automatically matched to 3CED A:247-341
        complexed with bu1
        
        region b:247-341 [156522]
      3. 3ced
        automatically matched to 3CED A:247-341
        complexed with bu1
        
        region c:247-341 [156523]
14. TM1266-like [160329] (1)
  PfamB 015436; stand-alone tetrameric protein; there are single beta-sheet dimers, whose beta-sheets are packed in parallel fasion in the tetramer
  1. Hypothetical protein TM1266 [160330]
    1. Thermotoga maritima [TaxId: 2336] [160331] (4)
      SQ Q9X0Z3 2-81
      1. 2nzc
        complexed with acy, gol, po4
        
        region a:2-81 [148528]
      2. 2nzc
        automatically matched to 2NZC A:2-81
        complexed with acy, gol, po4
        
        region b:2-81 [148529]
      3. 2nzc
        automatically matched to 2NZC A:2-81
        complexed with acy, gol, po4
        
        region c:2-81 [148530]
      4. 2nzc
        automatically matched to 2NZC A:2-81
        complexed with acy, gol, po4
        
        region d:2-81 [148531]
Bacterial exopeptidase dimerisation domain [55031] (1)
uperfamily
1. Bacterial exopeptidase dimerisation domain [55032] (9)
  1. Carboxypeptidase G2 [55033]
    dimerisation mode is similar to that of 1PSD domain
    1. Pseudomonas sp., strain rs-16 [TaxId: 306] [55034] (1)
      1. 1cg2
        complexed with zn
        
        region a:214-326 [39360]
        region b:214-326 [39361]
        region c:214-326 [39362]
        region d:214-326 [39363]
  2. Peptidase T (tripeptidase) [75443]
    1. Salmonella typhimurium [TaxId: 90371] [75444] (1)
      1. 1fno
        complexed with mse, so4, zn2
        
        region a:208-320 [70145]
    2. Escherichia coli [TaxId: 562] [103002] (1)
      1. 1vix
        structural genomics
        complexed with so4, zn
        
        region a:208-320 [100778]
        region b:208-320 [100780]
  3. Peptidase-like beta-alanine synthase [103003]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [103004] (2)
      1. 1r3n
        complexed with bib, zn
        
        region a:248-363 [96946]
        region b:248-363 [96948]
        region c:248-363 [96950]
        region d:248-363 [96952]
        region e:248-363 [96954]
        region f:248-363 [96956]
        region g:248-363 [96958]
        region h:248-363 [96960]
      2. 1r43
        complexed with bib, dtt, trs, zn
        
        region a:248-363 [96970]
        region b:248-363 [96972]
  4. Succinyl-diaminopimelate desuccinylase [103005]
    1. Neisseria meningitidis [TaxId: 487] [103006] (1)
      1. 1vgy
        structural genomics
        mutant
        
        region a:181-293 [100621]
        region b:181-293 [100623]
  5. IAA-amino acid hydrolase [117979]
    apparently monomeric
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117980] (2)
      SQ P54970 37-428
      1. 1xmb
        structural genomics target
        
        region a:216-334 [115480]
      2. 2q43
        automatically matched to d1xmba2
        
        region a:195-313 [139822]
  6. Aminopeptidase PepV [82685]
    contains insert sudbomain 205-292 mimicking the other half of the family-specific dimer
    1. Lactobacillus delbrueckii [TaxId: 1584] [82686] (1)
      1. 1lfw
        complexed with aep, zn
        
        region a:187-382 [77943]
  7. Allantoate amidohydrolase AllC [143401]
    1. Escherichia coli [TaxId: 562] [143402] (4)
      SQ P77425 211-327
      1. 1z2l
        complexed with 1al, so4, zn
        
        region a:213-329 [124384]
      2. 1z2l
        automatically matched to 1Z2L A:213-329
        complexed with 1al, so4, zn
        
        region b:213-329 [124386]
      3. 2imo
        automatically matched to 1Z2L A:213-329
        
        region a:213-329 [137516]
      4. 2imo
        automatically matched to 1Z2L A:213-329
        
        region b:213-329 [137518]
  8. Protein YxeP [143403]
    dimeric protein closely related to IAA-amino acid hydrolase
    1. Bacillus subtilis [TaxId: 1423] [143404] (2)
      SQ P54955 178-292
      1. 1ysj
        complexed with ni; mutant
        
        region a:178-292 [123976]
      2. 1ysj
        automatically matched to 1YSJ A:178-292
        complexed with ni; mutant
        
        region b:178-292 [123978]
NAD-binding domain of HMG-CoA reductase [55035] (1)
uperfamily
1. NAD-binding domain of HMG-CoA reductase [55036] (2)
  1. NAD-binding domain of HMG-CoA reductase [55037]
    1. Human (Homo sapiens) [TaxId: 9606] [55038] (9)
      1. 1dqa
        complexed with coa, mah, nap; mutant
        
        region a:587-703 [39364]
        region b:587-703 [39365]
        region c:587-703 [39366]
        region d:587-703 [39367]
      2. 1hw8
        complexed with 114, adp; mutant
        
        region a:587-703 [61298]
        region b:587-703 [61300]
        region c:587-703 [61302]
        region d:587-703 [61304]
      3. 1dq8
        complexed with coa, dtt, mah; mutant
        
        region a:587-703 [39368]
        region b:587-703 [39369]
        region c:587-703 [39370]
        region d:587-703 [39371]
      4. 1hwl
        complexed with adp, fbi; mutant
        
        region a:587-703 [61338]
        region b:587-703 [61340]
        region c:587-703 [61342]
        region d:587-703 [61344]
      5. 1hwi
        complexed with 115, adp; mutant
        
        region a:587-703 [61314]
        region b:587-703 [61316]
        region c:587-703 [61318]
        region d:587-703 [61320]
      6. 1hwj
        complexed with 116, adp; mutant
        
        region a:587-703 [61322]
        region b:587-703 [61324]
        region c:587-703 [61326]
        region d:587-703 [61328]
      7. 1hwk
        complexed with 117, adp; mutant
        
        region a:587-703 [61330]
        region b:587-703 [61332]
        region c:587-703 [61334]
        region d:587-703 [61336]
      8. 1hw9
        complexed with adp, sim; mutant
        
        region a:587-703 [61306]
        region b:587-703 [61308]
        region c:587-703 [61310]
        region d:587-703 [61312]
      9. 1dq9
        complexed with hmg; mutant
        
        region a:587-703 [39372]
        region b:587-703 [39373]
        region c:587-703 [39374]
        region d:587-703 [39375]
    2. Pseudomonas mevalonii [TaxId: 32044] [55039] (5)
      SQ P13702 4-377
      1. 1r31
        complexed with coa, mev, so4
        
        region a:111-220 [96897]
        region b:611-720 [96899]
      2. 1r7i
        complexed with gol, so4
        
        region a:111-220 [97198]
        region b:611-720 [97200]
      3. 1t02
        complexed with lva, so4
        
        region a:111-220 [106190]
        region b:111-220 [106192]
      4. 1qay
        complexed with mev, nad
        
        region a:111-220 [39378]
        region b:611-720 [39379]
      5. 1qax
        complexed with hmg, nad
        
        region a:111-220 [39376]
        region b:611-720 [39377]
Molybdenum cofactor biosynthesis protein C, MoaC [55040] (1)
uperfamily
1. Molybdenum cofactor biosynthesis protein C, MoaC [55041] (1)
  1. Molybdenum cofactor biosynthesis protein C, MoaC [55042]
    1. Escherichia coli [TaxId: 562] [55043] (2)
      1. 1ekr
        mutant
        
        chain a [39380]
      2. 1eks
        complexed with tar; mutant
        
        chain a [39381]
TRADD, N-terminal domain [55044] (1)
uperfamily
1. TRADD, N-terminal domain [55045] (1)
  1. TRADD, N-terminal domain [55046]
    1. Human (Homo sapiens) [TaxId: 9606] [55047] (2)
      1. 1f3v
        
        chain a [39382]
      2. 1f2h
        
        chain a [59612]
Probable ACP-binding domain of malonyl-CoA ACP transacylase [55048] (1)
uperfamily
1. Probable ACP-binding domain of malonyl-CoA ACP transacylase [55049] (2)
  1. Probable ACP-binding domain of malonyl-CoA ACP transacylase [55050]
    1. Escherichia coli [TaxId: 562] [55051] (1)
      1. 1mla
        
        region a:128-197 [39383]
    2. Streptomyces coelicolor A3(2) [TaxId: 100226] [82687] (1)
      1. 1nm2
        complexed with acy, ni
        
        region a:134-195 [80655]
CheY-binding domain of CheA [55052] (1)
uperfamily
1. CheY-binding domain of CheA [55053] (2)
  1. CheY-binding domain of CheA [55054]
    1. Escherichia coli [TaxId: 562] [55055] (6)
      1. 1ffg
        complexed with mn
        
        chain b [39384]
        chain d [39385]
      2. 1ffs
        complexed with mn
        
        chain b [39388]
        chain d [39389]
      3. 1eay
        
        chain c [39386]
        chain d [39387]
      4. 1ffw
        complexed with mn, pon
        
        chain b [39394]
        chain d [39395]
      5. 1a0o
        complexed with mn
        
        chain b [39390]
        chain d [39391]
        chain f [39392]
        chain h [39393]
      6. 1fwp
        
        chain a [39396]
    2. Thermotoga maritima [TaxId: 2336] [110983] (1)
      SQ Q56310 175-260
      structurally distinct from the E.coli domain and possesses a different CheY-binding mode
      1. 1u0s
        
        chain a [107565]
D-ribose-5-phosphate isomerase (RpiA), lid domain [75445] (1)
uperfamily
1. D-ribose-5-phosphate isomerase (RpiA), lid domain [75446] (4)
  1. D-ribose-5-phosphate isomerase (RpiA), lid domain [75447]
    1. Escherichia coli [TaxId: 562] [75448] (3)
      1. 1o8b
        complexed with abf, mse
        
        region a:127-198 [81181]
        region b:127-198 [81183]
      2. 1ks2
        structural genomics
        complexed with mse
        
        region a:127-198 [72909]
        region b:127-198 [72911]
      3. 1lkz
        complexed with mse
        
        region a:127-198 [73992]
        region b:127-198 [73994]
    2. Haemophilus influenzae [TaxId: 727] [82688] (1)
      1. 1m0s
        complexed with cit
        
        region a:127-198 [78352]
        region b:127-198 [78354]
    3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [75449] (2)
      1. 1lk5
        complexed with cl, na
        
        region a:131-210 [73961]
        region b:131-210 [73963]
        region c:131-210 [73965]
        region d:131-210 [73967]
      2. 1lk7
        complexed with cl, der, na
        
        region a:131-210 [73969]
        region b:131-210 [73971]
        region c:131-210 [73973]
        region d:131-210 [73975]
    4. Thermus thermophilus [TaxId: 274] [110984] (3)
      SQ Q72J47
      1. 1uj6
        complexed with a5p, cl
        
        region a:132-205 [107899]
      2. 1uj4
        complexed with cl
        
        region a:132-205 [107895]
      3. 1uj5
        complexed with cl, r5p
        
        region a:132-205 [107897]
Killer toxin KP6 alpha-subunit [55056] (1)
uperfamily
1. Killer toxin KP6 alpha-subunit [55057] (1)
  1. Killer toxin KP6 alpha-subunit [55058]
    1. Smut fungus (Ustilago maydis) [TaxId: 5270] [55059] (1)
      1. 1kp6
        complexed with so4
        
        chain a [39397]
Hypothetical protein VC0424 [89946] (1)
uperfamily
1. Hypothetical protein VC0424 [89947] (1)
  1. Hypothetical protein VC0424 [89948]
    1. Vibrio cholerae [TaxId: 666] [89949] (1)
      1. 1nxi
        structural genomics
        
        chain a [86381]
Hypothetical protein TT1725 [103007] (1)
uperfamily
1. Hypothetical protein TT1725 [103008] (1)
  1. Hypothetical protein TT1725 [103009]
    1. Thermus thermophilus [TaxId: 274] [103010] (1)
      structural genomics
      1. 1j27
        
        chain a [90778]
Mechanosensitive channel protein MscS (YggB), C-terminal domain [82689] (1)
the last strand of the fold is flipped away and involved in oligomerisation
uperfamily
1. Mechanosensitive channel protein MscS (YggB), C-terminal domain [82690] (1)
  1. Mechanosensitive channel protein MscS (YggB), C-terminal domain [82691]
    1. Escherichia coli [TaxId: 562] [82692] (14)
      1. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region a:180-280 [153614]
      2. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region b:180-280 [153617]
      3. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region c:180-280 [153620]
      4. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region d:180-280 [153623]
      5. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region e:180-280 [153626]
      6. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region f:180-280 [153629]
      7. 2vv5
        automatically matched to d2oaua2
        mutant
        
        region g:180-280 [153632]
      8. 2oau
        automatically matched to d1mxma2
        
        region a:180-280 [138979]
      9. 2oau
        automatically matched to d1mxma2
        
        region b:180-280 [138982]
      10. 2oau
        automatically matched to d1mxma2
        
        region c:180-280 [138985]
      11. 2oau
        automatically matched to d1mxma2
        
        region d:180-280 [138988]
      12. 2oau
        automatically matched to d1mxma2
        
        region e:180-280 [138991]
      13. 2oau
        automatically matched to d1mxma2
        
        region f:180-280 [138994]
      14. 2oau
        automatically matched to d1mxma2
        
        region g:180-280 [138997]
GHMP Kinase, C-terminal domain [55060] (7)
common fold is elaborated with additional secondary structures
uperfamily
1. Galactokinase [103011] (3)
  1. Galactokinase [103012]
    1. Lactococcus lactis [TaxId: 1358] [103013] (1)
      1. 1pie
        complexed with gal, po4
        
        region a:214-396 [94707]
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [103014] (1)
      1. 1s4e
        complexed with adp, gla, mg
        
        region a:181-351 [98478]
        region b:181-349 [98480]
        region c:181-350 [98482]
        region d:181-352 [98484]
        region e:181-352 [98486]
        region f:181-352 [98488]
        region g:184-347 [98490]
        region h:181-350 [98492]
        region i:181-352 [98494]
    3. Human (Homo sapiens) [TaxId: 9606] [117981] (1)
      SQ P51570
      1. 1wuu
        complexed with anp, gal, mg
        
        region a:217-392 [114901]
        region b:217-392 [114903]
        region c:217-392 [114905]
        region d:217-392 [114907]
2. Homoserine kinase [55061] (1)
  1. Homoserine kinase [55062]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55063] (5)
      1. 1h72
        complexed with anp, hse, trs
        
        region c:168-300 [60713]
      2. 1h73
        complexed with anp, thr
        
        region a:168-300 [60715]
      3. 1h74
        complexed with adp, ile, mg, sap
        
        region a:168-300 [65692]
        region b:168-300 [65694]
        region c:168-300 [65696]
        region d:168-300 [65698]
      4. 1fwk
        CASP4
        complexed with adp, mg
        
        region a:168-300 [39398]
        region b:168-300 [39399]
        region c:168-300 [39400]
        region d:168-300 [39401]
      5. 1fwl
        
        region a:168-300 [39402]
        region b:168-300 [39403]
        region c:168-300 [39404]
        region d:168-300 [39405]
3. Mevalonate kinase [75450] (2)
  1. Mevalonate kinase [75451]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [75452] (2)
      1. 1kkh
        complexed with dio
        
        region a:181-317 [72646]
      2. 1vis
        structural genomics
        complexed with dox
        
        region a:181-313 [100770]
    2. Rat (Rattus norvegicus) [TaxId: 10116] [75453] (2)
      1. 1kvk
        complexed with atp, mg
        
        region a:226-394 [73061]
      2. 2r42
        automatically matched to d1kvka2
        complexed with fps, mg
        
        region a:226-394 [151574]
4. Phosphomevalonate kinase (PMK) [75454] (1)
  1. Phosphomevalonate kinase (PMK) [75455]
    1. Streptococcus pneumoniae r6 [TaxId: 171101] [75456] (1)
      1. 1k47
        complexed with mse
        
        region a:195-329 [72041]
        region b:195-329 [72043]
        region c:195-329 [72045]
        region d:195-329 [72047]
        region e:195-329 [72049]
        region f:195-329 [72051]
5. Mevalonate 5-diphosphate decarboxylase [64281] (1)
  1. Mevalonate 5-diphosphate decarboxylase [64282]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64283] (1)
      1. 1fi4
        mutant
        
        region a:191-393 [59848]
6. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89950] (2)
  1. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89951]
    1. Thermus thermophilus [TaxId: 274] [89952] (1)
      1. 1uek
        
        region a:149-268 [88484]
    2. Escherichia coli [TaxId: 562] [103015] (1)
      1. 1oj4
        complexed with anp, cdm, cl
        
        region a:164-283 [93084]
        region b:164-283 [93086]
7. Early switch protein XOL-1 [89953] (1)
  lost the ATP-binding site
  1. Early switch protein XOL-1 [89954]
    primary determinant of sexual fate in C. elegans
    1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [89955] (1)
      1. 1mg7
        
        region a:188-380 [84955]
        region b:188-380 [84957]
Translational regulator protein regA [55064] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Translational regulator protein regA [55065] (1)
  1. Translational regulator protein regA [55066]
    1. Bacteriophage T4 [TaxId: 10665] [55067] (1)
      1. 1reg
        
        chain x [39406]
        chain y [39407]
Peptide methionine sulfoxide reductase [55068] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Peptide methionine sulfoxide reductase [55069] (3)
  1. Peptide methionine sulfoxide reductase [55070]
    1. Cow (Bos taurus) [TaxId: 9913] [55071] (2)
      1. 1fvg
        complexed with dtt
        
        chain a [39408]
      2. 1fva
        
        chain a [39409]
        chain b [39410]
    2. Escherichia coli [TaxId: 562] [55072] (2)
      1. 1ff3
        complexed with cas, so4
        
        chain a [39411]
        chain b [39412]
        chain c [39413]
      2. 2gt3
        automatically matched to d1ff3a_
        
        region a:1-211 [135623]
    3. Mycobacterium tuberculosis [TaxId: 1773] [89956] (1)
      1. 1nwa
        
        chain a [86295]
Nucleotide cyclase [55073] (2)
common fold is elaborated with additional secondary structures
uperfamily
1. Adenylyl and guanylyl cyclase catalytic domain [55074] (5)
  Pfam 00211
  structurally similar to the "palm" domain of DNA/RNA polymerase superfamily
  1. Type II adenylyl cyclase C2 domain [55075]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55076] (5)
      SQ P26769 879-1077
      1. 1ab8
        complexed with fok
        
        chain a [39414]
        chain b [39415]
      2. 2gvd
        automatically matched to d1ab8b_
        complexed with 128, cl, fkp, gsp, mn
        
        region b:879-1076 [135772]
      3. 1tl7
        complexed with cl, fok, gsp, mg, mn, onm
        
        chain b [112502]
      4. 1u0h
        complexed with cl, fok, gsp, mg, onm
        
        chain b [112917]
      5. 2gvz
        automatically matched to d1ab8b_
        complexed with cl, fkp, gsp, mn, ona
        
        region b:880-1076 [135798]
  2. Adenylyl cyclase VC1, domain C1a [55077]
    1. Dog (Canis familiaris) [TaxId: 9615] [55078] (11)
      SQ P30803 458-646
      1. 1azs
        complexed with fkp, gsp, mg; mutant
        
        chain a [39416]
      2. 1cul
        complexed with 103, 3po, cl, fok, gsp, mes, mg; mutant
        
        chain a [39417]
      3. 1cs4
        complexed with 101, cl, fok, gsp, mes, mg, pop; mutant
        
        chain a [39418]
      4. 1cjt
        complexed with cl, dad, fok, gsp, mes, mg, mn; mutant
        
        chain a [39419]
      5. 1cju
        complexed with cl, dad, fok, gsp, mg; mutant
        
        chain a [39420]
      6. 1cjk
        complexed with ags, cl, fok, gsp, mes, mg, mn; mutant
        
        chain a [39421]
      7. 1cjv
        complexed with cl, dad, fok, gsp, mes, mg, zn; mutant
        
        chain a [39422]
      8. 2gvd
        automatically matched to d1azsa_
        complexed with 128, cl, fkp, gsp, mn
        
        region a:376-565 [135771]
      9. 1tl7
        complexed with cl, fok, gsp, mg, mn, onm
        
        chain a [112501]
      10. 1u0h
        complexed with cl, fok, gsp, mg, onm
        
        chain a [112916]
      11. 2gvz
        automatically matched to d1azsa_
        complexed with cl, fkp, gsp, mn, ona
        
        region a:377-565 [135797]
  3. Adenylyl cyclase IIC1, domain C2a [55079]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55080] (7)
      1. 1azs
        complexed with fkp, gsp, mg; mutant
        
        chain b [39423]
      2. 1cul
        complexed with 103, 3po, cl, fok, gsp, mes, mg; mutant
        
        chain b [39424]
      3. 1cs4
        complexed with 101, cl, fok, gsp, mes, mg, pop; mutant
        
        chain b [39425]
      4. 1cjt
        complexed with cl, dad, fok, gsp, mes, mg, mn; mutant
        
        chain b [39426]
      5. 1cju
        complexed with cl, dad, fok, gsp, mg; mutant
        
        chain b [39427]
      6. 1cjk
        complexed with ags, cl, fok, gsp, mes, mg, mn; mutant
        
        chain b [39428]
      7. 1cjv
        complexed with cl, dad, fok, gsp, mes, mg, zn; mutant
        
        chain b [39429]
  4. Receptor-type monomeric adenylyl cyclase [55081]
    1. Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691] [55082] (2)
      1. 1fx2
        variant Gresag 4.1
        complexed with dtt, so4
        
        chain a [39430]
      2. 1fx4
        variant Gresag 4.3
        complexed with mg
        
        chain a [39431]
  5. Adenylate cyclase CyaC [117982]
    1. Spirulina platensis [TaxId: 118562] [117983] (6)
      SQ O32393 1004-1200
      1. 1wc3
        complexed with apc, sr
        
        chain a [114495]
        chain b [114496]
      2. 1wc1
        complexed with mg, tat
        
        chain a [114492]
        chain b [114493]
        chain c [114494]
      3. 1wc0
        complexed with apc, ca
        
        chain a [114490]
        chain b [114491]
      4. 1wc5
        complexed with apc, ca, mg
        
        chain a [114499]
        chain b [114500]
        chain c [114501]
        chain d [114502]
      5. 1wc6
        complexed with mg, tat
        
        chain a [114503]
        chain b [114504]
        chain c [114505]
      6. 1wc4
        complexed with apc, eu3
        
        chain a [114497]
        chain b [114498]
2. GGDEF domain [117984] (1)
  Pfam 00990; less decorated than the adenylyl/guanylyl cyclase domain
  1. Response regulator PleD, C-terminal domain [117985]
    Diguanylate cyclase
    1. Caulobacter crescentus [TaxId: 155892] [117986] (3)
      SQ Q9A5I5
      1. 1w25
        complexed with 5gp, mg, zn
        
        region a:294-455 [114092]
        region b:294-455 [114095]
      2. 2v0n
        automatically matched to d1w25a3
        complexed with 5gp, bef, cl, gav, mg, so4
        
        region a:294-454 [152367]
      3. 2v0n
        automatically matched to d1w25a3
        complexed with 5gp, bef, cl, gav, mg, so4
        
        region b:294-454 [152370]
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55083] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55084] (2)
  1. 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55085]
    1. Escherichia coli [TaxId: 562] [55086] (19)
      SQ P26281
      1. 1f9y
        complexed with act, apc, cl, hhr, mg
        
        chain a [83249]
      2. 1q0n
        complexed with act, apc, cl, hhp, mg
        
        chain a [95506]
      3. 1hq2
        complexed with act, apc, cl, hhp, mg; mutant
        
        chain a [83620]
      4. 1rtz
        complexed with cl, gol, mg; mutant
        
        chain a [97831]
      5. 1f9h
        complexed with apc, cl, hhp, mg; mutant
        
        chain a [83248]
      6. 1rb0
        complexed with hh2
        
        chain a [111764]
      7. 1ru1
        complexed with apc, cl, hhp, mg; mutant
        
        chain a [97832]
        chain b [97833]
      8. 1rao
        complexed with amp, hh2
        
        chain a [111763]
      9. 1hka
        CASP3
        
        chain a [39433]
      10. 1ru2
        complexed with apc, cl, hhr, mg; mutant
        
        chain a [97834]
      11. 1eqm
        complexed with adp, mg, po4
        
        chain a [59497]
      12. 1kbr
        complexed with cl; mutant
        
        chain a [84351]
      13. 1im6
        complexed with cl; mutant
        
        chain a [83693]
      14. 1g4c
        complexed with cl, mg; mutant
        
        chain a [83270]
        chain b [83271]
      15. 1dy3
        complexed with 87y, atp, mg
        
        chain a [39434]
      16. 1ex8
        complexed with a4p, cl, mg
        
        chain a [59538]
      17. 2f63
        automatically matched to d1dy3a_
        
        region a:1-158 [133023]
      18. 2f65
        automatically matched to d1dy3a_
        
        region a:1-158 [133026]
      19. 1eq0
        
        chain a [64909]
    2. Haemophilus influenzae [TaxId: 727] [55087] (1)
      1. 1cbk
        complexed with roi, so4
        
        chain a [39435]
        chain b [39436]
Glutamyl tRNA-reductase catalytic, N-terminal domain [69742] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Glutamyl tRNA-reductase catalytic, N-terminal domain [69743] (1)
  1. Glutamyl tRNA-reductase catalytic, N-terminal domain [69744]
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [69745] (1)
      1. 1gpj
        complexed with cit, glu, gmc; mutant
        
        region a:1-143 [65453]
MTH1187/YkoF-like [89957] (2)
uperfamily
1. MTH1187-like [89958] (5)
  Pfam 01910; two domains form a single beta-sheet dimer; two dimers pack sheet-to-sheet in a tetramer; contains extra C-terminal helix
  1. Hypothetical protein MTH1187 [89959]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [89960] (1)
      1. 1lxn
        structural genomics; NESG target TT272
        complexed with mse, so4
        
        chain a [84737]
        chain b [84738]
        chain c [84739]
        chain d [84740]
  2. Hypothetical protein YB1001C [89961]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89962] (1)
      1. 1lxj
        structural genomics; NESG target Ytyst72
        complexed with mse, so4
        
        chain a [84736]
  3. Hypothetical protein TM0486 [110985]
    1. Thermotoga maritima [TaxId: 2336] [110986] (1)
      SQ Q9WYV6
      1. 1vk8
        Structural genomics target
        complexed with unl
        
        chain a [108636]
        chain b [108637]
        chain c [108638]
        chain d [108639]
  4. Hypothetical protein BC0424 [143405]
    1. Bacillus cereus [TaxId: 1396] [143406] (2)
      SQ Q81IG4 1-101
      1. 1yqh
        
        region a:1-101 [123886]
      2. 1yqh
        automatically matched to 1YQH A:1-101
        
        region b:1-101 [123887]
  5. Hypothetical protein SP2199 [143407]
    1. Streptococcus pneumoniae [TaxId: 1313] [143408] (4)
      SQ Q97N67 1-90
      1. 2ibo
        
        region a:1-90 [137197]
      2. 2ibo
        automatically matched to 2IBO A:1-90
        
        region b:1-90 [137198]
      3. 2ibo
        automatically matched to 2IBO A:1-90
        
        region c:1-90 [137199]
      4. 2ibo
        automatically matched to 2IBO A:1-90
        
        region d:1-90 [137200]
2. Putative thiamin/HMP-binding protein YkoF [110987] (1)
  duplication: one subunit consists of two domains assembled as in the MHT1178-like dimer
  1. Putative thiamin/HMP-binding protein YkoF [110988]
    1. Bacillus subtilis [TaxId: 1423] [110989] (3)
      SQ O34911
      1. 1s99
        complexed with act, ca; mutant
        
        chain a [112046]
      2. 1s7h
        Structural genomics target
        
        chain a [105349]
        chain b [105350]
        chain c [105351]
        chain d [105352]
      3. 1sbr
        complexed with ca, vib; mutant
        
        chain a [112066]
        chain b [112067]
Methyl-coenzyme M reductase subunits [55088] (2)
each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
uperfamily
1. Methyl-coenzyme M reductase gamma chain [55089] (3)
  1. Methyl-coenzyme M reductase gamma chain [55090]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55091] (5)
      1. 1hbn
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        chain c [60902]
        chain f [60907]
      2. 1mro
        complexed with com, f43, gol, mgn, na, tp7, zn
        
        chain c [39437]
        chain f [39438]
      3. 1hbm
        complexed with cl, f43, gol, mg, mgn, na, sht, zn
        
        chain c [60892]
        chain f [60897]
      4. 1hbo
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        chain c [60912]
        chain f [60917]
      5. 1hbu
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        chain c [60922]
        chain f [60927]
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55092] (1)
      1. 1e6v
        complexed with com, f43, tp7
        
        chain c [39439]
        chain f [39440]
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55093] (1)
      1. 1e6y
        complexed with com, f43, gol, tp7
        
        chain c [39441]
        chain f [39442]
2. Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (6)
  C-terminal domain is all-alpha
  1. Alpha chain [55095]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55096] (5)
      1. 1hbn
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region a:2-269 [60899]
        region d:2-269 [60904]
      2. 1mro
        complexed with com, f43, gol, mgn, na, tp7, zn
        
        region a:2-269 [39443]
        region d:2-269 [39444]
      3. 1hbm
        complexed with cl, f43, gol, mg, mgn, na, sht, zn
        
        region a:2-269 [60889]
        region d:2-269 [60894]
      4. 1hbo
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region a:2-269 [60909]
        region d:2-269 [60914]
      5. 1hbu
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region a:2-269 [60919]
        region d:2-269 [60924]
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55097] (1)
      1. 1e6v
        complexed with com, f43, tp7
        
        region a:8-272 [39445]
        region d:8-272 [39446]
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55098] (1)
      1. 1e6y
        complexed with com, f43, gol, tp7
        
        region a:1002-1283 [39447]
        region d:4002-4283 [39448]
  2. Beta chain [55099]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55100] (5)
      1. 1hbn
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region b:2-188 [60901]
        region e:2-188 [60906]
      2. 1mro
        complexed with com, f43, gol, mgn, na, tp7, zn
        
        region b:2-188 [39449]
        region e:2-188 [39450]
      3. 1hbm
        complexed with cl, f43, gol, mg, mgn, na, sht, zn
        
        region b:2-188 [60891]
        region e:2-188 [60896]
      4. 1hbo
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region b:2-188 [60911]
        region e:2-188 [60916]
      5. 1hbu
        complexed with cl, com, f43, gol, mg, mgn, na, tp7, zn
        
        region b:2-188 [60921]
        region e:2-188 [60926]
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55101] (1)
      1. 1e6v
        complexed with com, f43, tp7
        
        region b:7-189 [39451]
        region e:7-189 [39452]
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55102] (1)
      1. 1e6y
        complexed with com, f43, gol, tp7
        
        region b:2002-2185 [39453]
        region e:5002-5185 [39454]
FAD-linked oxidases, C-terminal domain [55103] (4)
duplication: contains two subdomains of this fold
uperfamily
1. Vanillyl-alcohol oxidase-like [55104] (2)
  1. Vanillyl-alcohol oxidase [55105]
    1. Fungus (Penicillium simplicissimum) [TaxId: 69488] [55106] (16)
      SQ P56216
      1. 1e8g
        complexed with fad, fcr; mutant
        
        region a:274-560 [39455]
        region b:274-560 [39456]
      2. 1qlt
        complexed with act, fad; mutant
        
        region a:274-560 [39457]
        region b:274-560 [39458]
      3. 1qlu
        complexed with eug, fad; mutant
        
        region a:274-560 [39459]
        region b:274-560 [39460]
      4. 1ahv
        complexed with fad, ncr
        
        region a:274-560 [39463]
        region b:274-560 [39464]
      5. 1vao
        complexed with act, cl, fad
        
        region a:274-560 [39461]
        region b:274-560 [39462]
      6. 1w1k
        complexed with eug, fad; mutant
        
        region a:274-560 [109059]
        region b:274-560 [109061]
      7. 1ahz
        complexed with cl, ept, fad
        
        region a:274-560 [39477]
        region b:274-560 [39478]
      8. 1e8h
        complexed with adp; mutant
        
        region a:274-560 [39465]
        region b:274-560 [39466]
      9. 1ahu
        complexed with faa
        
        region a:274-560 [39469]
        region b:274-560 [39470]
      10. 1e0y
        complexed with fad, fcr; mutant
        
        region a:274-560 [39467]
        region b:274-560 [39468]
      11. 1w1l
        complexed with eug, fad; mutant
        
        region a:274-560 [109063]
        region b:274-560 [109065]
      12. 1w1j
        complexed with eug, fad; mutant
        
        region a:274-560 [109055]
        region b:274-560 [109057]
      13. 2vao
        complexed with eug, fad
        
        region a:274-560 [39473]
        region b:274-560 [39474]
      14. 1dzn
        complexed with eug, fad; mutant
        
        region a:274-560 [39471]
        region b:274-560 [39472]
      15. 1e8f
        mutant
        
        region a:274-560 [39475]
        region b:274-560 [39476]
      16. 1w1m
        complexed with eug, fad; mutant
        
        region a:274-560 [109067]
        region b:274-560 [109069]
  2. Flavoprotein subunit of p-cresol methylhydroxylase [55107]
    the other subunit is a short-chain cytochrome c
    1. Pseudomonas putida [TaxId: 303] [55108] (5)
      1. 1wvf
        automatically matched to d1diia1
        complexed with acy, cl, fad, gol
        
        region a:243-521 [121337]
      2. 1wve
        automatically matched to d1diia1
        complexed with acy, cl, fad, hem, trs
        
        region a:243-521 [121331]
      3. 1wve
        automatically matched to d1diia1
        complexed with acy, cl, fad, hem, trs
        
        region b:243-521 [121333]
      4. 1diq
        
        region a:243-521 [39479]
        region b:243-521 [39480]
      5. 1dii
        
        region a:243-521 [39481]
        region b:243-521 [39482]
2. D-lactate dehydrogenase [55109] (1)
  1. D-lactate dehydrogenase [55110]
    1. Escherichia coli [TaxId: 562] [55111] (1)
      1. 1f0x
        complexed with fad
        
        region a:274-567 [39483]
        region b:1274-1567 [39484]
3. Cholesterol oxidase [64284] (1)
  1. Cholesterol oxidase [64285]
    1. Brevibacterium sterolicum [TaxId: 1702] [64286] (2)
      1. 2i0k
        automatically matched to d1i19a1
        complexed with cac, fad, gol, mn; mutant
        
        region a:274-613 [147480]
      2. 1i19
        complexed with cac, edo, fad, mn
        
        region a:274-613 [61522]
        region b:274-613 [61524]
4. Cytokinin dehydrogenase 1 [110990] (1)
  1. Cytokinin dehydrogenase 1 [110991]
    1. Maize (Zea mays) [TaxId: 4577] [110992] (4)
      SQ Q9T0N8
      1. 1w1o
        complexed with fad, nag
        
        region a:246-534 [109071]
      2. 1w1q
        complexed with fad, nag, zip
        
        region a:246-534 [109073]
      3. 1w1r
        complexed with fad, nag, zea
        
        region a:246-534 [109075]
      4. 1w1s
        complexed with emu, fad, nag
        
        region a:246-534 [109077]
Formylmethanofuran:tetrahydromethanopterin formyltransferase [55112] (1)
duplication: contains two subdomains of this fold
uperfamily
1. Formylmethanofuran:tetrahydromethanopterin formyltransferase [55113] (3)
  1. Formylmethanofuran:tetrahydromethanopterin formyltransferase [55114]
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [55115] (17)
      1. 1ftr
        
        region a:1-148 [39485]
        region a:149-296 [39486]
        region b:1-148 [39487]
        region b:149-296 [39488]
        region c:1-148 [39489]
        region c:149-296 [39490]
        region d:1-148 [39491]
        region d:149-296 [39492]
      2. 2fhk
        automatically matched to d1ftra1
        complexed with k, mfn
        
        region a:1-148 [133487]
      3. 2fhk
        automatically matched to d1ftra2
        complexed with k, mfn
        
        region a:149-296 [133488]
      4. 2fhk
        automatically matched to d1ftra1
        complexed with k, mfn
        
        region b:1-148 [133489]
      5. 2fhk
        automatically matched to d1ftra2
        complexed with k, mfn
        
        region b:149-296 [133490]
      6. 2fhk
        automatically matched to d1ftra1
        complexed with k, mfn
        
        region c:1-148 [133491]
      7. 2fhk
        automatically matched to d1ftra2
        complexed with k, mfn
        
        region c:149-296 [133492]
      8. 2fhk
        automatically matched to d1ftra1
        complexed with k, mfn
        
        region d:1-148 [133493]
      9. 2fhk
        automatically matched to d1ftra2
        complexed with k, mfn
        
        region d:149-296 [133494]
      10. 2fhj
        automatically matched to d1ftra1
        complexed with h4z, k, mfn, pe3, pe4
        
        region a:1-148 [133479]
      11. 2fhj
        automatically matched to d1ftra2
        complexed with h4z, k, mfn, pe3, pe4
        
        region a:149-296 [133480]
      12. 2fhj
        automatically matched to d1ftra1
        complexed with h4z, k, mfn, pe3, pe4
        
        region b:1-148 [133481]
      13. 2fhj
        automatically matched to d1ftra2
        complexed with h4z, k, mfn, pe3, pe4
        
        region b:149-296 [133482]
      14. 2fhj
        automatically matched to d1ftra1
        complexed with h4z, k, mfn, pe3, pe4
        
        region c:1-148 [133483]
      15. 2fhj
        automatically matched to d1ftra2
        complexed with h4z, k, mfn, pe3, pe4
        
        region c:149-296 [133484]
      16. 2fhj
        automatically matched to d1ftra1
        complexed with h4z, k, mfn, pe3, pe4
        
        region d:1-148 [133485]
      17. 2fhj
        automatically matched to d1ftra2
        complexed with h4z, k, mfn, pe3, pe4
        
        region d:149-296 [133486]
    2. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [75457] (1)
      1. 1m5h
        complexed with k
        
        region a:1-145 [74493]
        region a:146-297 [74494]
        region b:1001-1145 [74495]
        region b:1146-1297 [74496]
        region c:2001-2145 [74497]
        region c:2146-2297 [74498]
        region d:3001-3145 [74499]
        region d:3146-3297 [74500]
        region e:4001-4145 [74501]
        region e:4146-4297 [74502]
        region f:5001-5145 [74503]
        region f:5146-5297 [74504]
        region g:6001-6145 [74505]
        region g:6146-6297 [74506]
        region h:7001-7145 [74507]
        region h:7146-7297 [74508]
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [75458] (1)
      1. 1m5s
        
        region a:1-145 [74511]
        region a:146-297 [74512]
        region b:1001-1145 [74513]
        region b:1146-1297 [74514]
        region c:2001-2145 [74515]
        region c:2146-2297 [74516]
        region d:3001-3145 [74517]
        region d:3146-3297 [74518]
Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55116] (1)
duplication: contains two subdomains of this fold
uperfamily
1. Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55117] (1)
  1. Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55118]
    1. Pig (Sus scrofa) [TaxId: 9823] [55119] (1)
      1. 1qd1
        
        region a:2-180 [39493]
        region a:181-326 [39494]
        region b:2002-2180 [39495]
        region b:2181-2326 [39496]
Nitrite/Sulfite reductase N-terminal domain-like [55124] (2)
duplication: contains two subdomains of this fold
uperfamily
1. Duplicated SiR/NiR-like domains 1 and 3 [55125] (3)
  1. Sulfite reductase, domains 1 and 3 [55126]
    1. Escherichia coli [TaxId: 562] [55127] (12)
      1. 1aop
        complexed with fs4, k, po4, srm
        
        region a:81-145 [39501]
        region a:346-425 [39502]
      2. 2aop
        complexed with fs4, k, po4, srm
        
        region a:81-145 [39503]
        region a:346-425 [39504]
      3. 4aop
        complexed with fs4, k, po4, srm
        
        region a:82-145 [39505]
        region a:346-425 [39506]
      4. 6gep
        complexed with fs4, k, no, srm
        
        region a:81-145 [39513]
        region a:346-425 [39514]
      5. 2gep
        complexed with fs4, na, so3, srm
        
        region a:81-145 [39515]
        region a:346-425 [39516]
      6. 3aop
        complexed with fs4, k, po4, srm
        
        region a:82-145 [39507]
        region a:346-425 [39508]
      7. 4gep
        complexed with cyn, fs4, k, srm
        
        region a:81-145 [39519]
        region a:346-425 [39520]
      8. 5gep
        complexed with cmo, fs4, k, srm
        
        region a:81-145 [39517]
        region a:346-425 [39518]
      9. 5aop
        complexed with fs4, k, srm
        
        region a:81-145 [39509]
        region a:346-425 [39510]
      10. 3geo
        complexed with fs4, na, no2, srm
        
        region a:81-145 [39511]
        region a:346-425 [39512]
      11. 8gep
        complexed with fs4, k, no3, srm
        
        region a:81-145 [39521]
        region a:346-425 [39522]
      12. 7gep
        complexed with fs4, na, srm, sx
        
        region a:81-145 [39523]
        region a:346-425 [39524]
  2. Ferredoxin--nitrite reductase, NIR [160332]
    1. Spinach (Spinacia oleracea) [TaxId: 3562] [160333] (2)
      SQ P05314 378-462! SQ P05314 54-206
      1. 2akj
        complexed with sf4, srm
        
        region a:346-430 [146057]
      2. 2akj
        complexed with sf4, srm
        
        region a:22-174 [146058]
  3. Sulfite reductase NirA [160334]
    1. Mycobacterium tuberculosis [TaxId: 1773] [160335] (8)
      SQ P71753 10-161! SQ P71753 327-406
      1. 1zj8
        complexed with cl, sf4, srm
        
        region a:327-406 [146003]
      2. 1zj8
        complexed with cl, sf4, srm
        
        region a:10-161 [146004]
      3. 1zj8
        automatically matched to 1ZJ8 A:327-406
        complexed with cl, sf4, srm
        
        region b:327-406 [146007]
      4. 1zj8
        automatically matched to 1ZJ8 A:10-161
        complexed with cl, sf4, srm
        
        region b:10-161 [146008]
      5. 1zj9
        automatically matched to 1ZJ8 A:327-406
        complexed with cl, sf4, srm
        
        region a:327-406 [146011]
      6. 1zj9
        automatically matched to 1ZJ8 A:10-161
        complexed with cl, sf4, srm
        
        region a:10-161 [146012]
      7. 1zj9
        automatically matched to 1ZJ8 A:327-406
        complexed with cl, sf4, srm
        
        region b:327-406 [146015]
      8. 1zj9
        automatically matched to 1ZJ8 A:10-161
        complexed with cl, sf4, srm
        
        region b:10-161 [146016]
2. DsrA/DsrB N-terminal-domain-like [160336] (4)
  Dissimilatory sulfite reductase is a heterodimer of homologous DsrA and DsrB subunits, the assembly of which is similar to the architecture of duplicated sulfite reductase CysI
  1. Dissimilatory sulfite reductase subunit alpha, DsrA [160337]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160338] (2)
      SQ Q59109 2-418
      1. 3c7b
        complexed with sf4, so3, srm
        
        region a:1-166 [156002]
      2. 3c7b
        automatically matched to 3C7B A:1-166
        complexed with sf4, so3, srm
        
        region d:1-166 [156008]
    2. Desulfovibrio vulgaris [TaxId: 881] [160339] (2)
      SQ P45574 2-437
      1. 2v4j
        complexed with sf4, so3, srm
        
        region a:2-167 [152557]
      2. 2v4j
        automatically matched to 2V4J A:2-167
        complexed with sf4, so3, srm
        
        region d:2-167 [152564]
  2. Dissimilatory sulfite reductase subunit beta, DsrB [160340]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160341] (2)
      SQ Q59110 4-122
      1. 3c7b
        complexed with sf4, so3, srm
        
        region b:4-122 [156005]
      2. 3c7b
        automatically matched to 3C7B B:4-122
        complexed with sf4, so3, srm
        
        region e:4-122 [156011]
    2. Desulfovibrio vulgaris [TaxId: 881] [160342] (2)
      SQ P45575 2-381
      1. 2v4j
        complexed with sf4, so3, srm
        
        region b:2-135 [152560]
      2. 2v4j
        automatically matched to 2V4J B:2-135
        complexed with sf4, so3, srm
        
        region e:2-135 [152567]
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82693] (1)
duplication: the N- and C-terminal halves of the whole proteins are structurally similar; each half contains two domains of this fold
uperfamily
1. Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82694] (1)
  1. Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82695]
    PN2 and PC2 subdomains are interrupted by the inserted subdomains DN and DC, respectively
    1. Escherichia coli [TaxId: 562] [82696] (6)
      1. 1iwg
        
        region a:38-134 [76874]
        region a:135-181,a:274-330 [76875]
        region a:567-673 [76876]
        region a:674-724,a:813-859 [76877]
      2. 1oy8
        complexed with rhq
        
        region a:38-134 [87563]
        region a:135-181,a:274-330 [87564]
        region a:567-673 [87565]
        region a:674-724,a:813-859 [87566]
      3. 1oy6
        
        region a:38-134 [87555]
        region a:135-181,a:274-330 [87556]
        region a:567-673 [87557]
        region a:674-724,a:813-859 [87558]
      4. 1oye
        complexed with cpf
        
        region a:38-134 [87587]
        region a:135-181,a:274-330 [87588]
        region a:567-673 [87589]
        region a:674-724,a:813-859 [87590]
      5. 1oy9
        complexed with et
        
        region a:38-134 [87571]
        region a:135-181,a:274-330 [87572]
        region a:567-673 [87573]
        region a:674-724,a:813-859 [87574]
      6. 1oyd
        complexed with deq
        
        region a:38-134 [87579]
        region a:135-181,a:274-330 [87580]
        region a:567-673 [87581]
        region a:674-724,a:813-859 [87582]
YajQ-like [89963] (1)
duplication: consists of two domains of this fold swapped with their N-terminal strands
uperfamily
1. YajQ-like [89964] (1)
  1. Hypothetical protein HI1034 [89965]
    1. Haemophilus influenzae [TaxId: 727] [89966] (1)
      1. 1in0
        structural genomics
        CASP5
        complexed with hg, mmc, na
        
        region a:2-89 [83694]
        region a:90-163 [83695]
        region b:2-89 [83696]
        region b:90-163 [83697]
eIF-2-alpha, C-terminal domain [110993] (1)
uperfamily
1. eIF-2-alpha, C-terminal domain [110994] (2)
  1. eIF-2-alpha, C-terminal domain [110995]
    1. Human (Homo sapiens) [TaxId: 9606] [110996] (1)
      SQ P05198
      1. 1q8k
        
        region a:186-302 [104557]
    2. Sulfolobus solfataricus [TaxId: 2287] [143409] (3)
      SQ Q97Z79 176-264
      1. 2qn6
        automatically matched to d2ahob3
        complexed with gdp, mg
        
        region b:176-264 [150914]
      2. 2aho
        complexed with gnp, mg, zn
        
        region b:176-264 [126772]
      3. 2qmu
        automatically matched to d2ahob3
        complexed with gdp, po4, zn
        
        region b:176-264 [150897]
Sporulation related repeat [110997] (1)
duplication: one domain contains two repeats of similar sequence and structure
uperfamily
1. Sporulation related repeat [110998] (1)
  Pfam 05036; SPOR
  1. Cell division protein FtsN [110999]
    1. Escherichia coli [TaxId: 562] [111000] (1)
      SQ P29131 243-319
      1. 1uta
        
        chain a [108029]
CRISPR-associated protein [117987] (1)
duplication: contains two subdomains of this fold
uperfamily
1. CRISPR-associated protein [117988] (1)
  1. Hypothetical protein TTHB192 [117989]
    1. Thermus thermophilus [TaxId: 274] [117990] (1)
      SQ Q53WG9
      1. 1wj9
        Structural genomics target
        
        region a:1-87 [114694]
        region a:88-211 [114695]
YbeD/HP0495-like [117991] (2)
uperfamily
1. YbeD-like [117992] (1)
  Pfam 04359; DUF493
  1. Hypothetical protein ybeD [117993]
    1. Escherichia coli [TaxId: 562] [117994] (1)
      SQ P0A8J4
      1. 1rwu
        Structural genomics target
        
        chain a [111955]
2. HP0495-like [160343] (1)
  PfamB 045675
  1. Hypothetical protein HP0495 [160344]
    1. Helicobacter pylori [TaxId: 210] [160345] (2)
      SQ O25237 1-86
      1. 2joq
        
        region a:4-89 [148160]
      2. 2h9z
        
        region a:1-86 [147250]
DOPA-like [143410] (1)
probable biological unit is homodimer; the extra C-terminal strand, adjacent and antiparallel to strand 4, contributes to the dimerisation interface
uperfamily
1. DOPA dioxygenase-like [143411] (1)
  Pfam 08883
  1. Putative dioxygenase BxeB0224 [143412]
    Bxeno_B2751
    1. Burkholderia xenovorans [TaxId: 36873] [143413] (6)
      SQ Q13JM0 1-115
      1. 2p8i
        automatically matched to 2NYH A:1-115
        complexed with cit, cl, edo, po4
        
        region a:1-115 [139522]
      2. 2p8i
        automatically matched to 2NYH A:1-115
        complexed with cit, cl, edo, po4
        
        region b:1-115 [139523]
      3. 2p8i
        automatically matched to 2NYH A:1-115
        complexed with cit, cl, edo, po4
        
        region c:1-115 [139524]
      4. 2p8i
        automatically matched to 2NYH A:1-115
        complexed with cit, cl, edo, po4
        
        region d:1-115 [139525]
      5. 2nyh
        complexed with so4
        
        region a:1-115 [138813]
      6. 2nyh
        automatically matched to 2NYH A:1-115
        complexed with so4
        
        region b:1-115 [138814]
CcmK-like [143414] (1)
contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
uperfamily
1. CcmK-like [143415] (3)
  Pfam 00936; BMC domain
  1. Major carboxysome shell protein 1A, CsoS1A [143416]
    1. Halothiobacillus neapolitanus [TaxId: 927] [143417] (2)
      SQ P45689 5-97
      1. 2ewh
        complexed with edo, trs
        
        region a:6-98 [132466]
      2. 2g13
        complexed with so4
        
        region a:4-98 [147072]
  2. Carboxysome shell protein CcmK4 [143418]
    1. Synechocystis sp. PCC 6803 [TaxId: 1148] [143419] (9)
      SQ P73407 3-106
      1. 2a10
        
        region a:4-107 [125965]
      2. 2a10
        automatically matched to 2A10 A:4-107
        
        region b:4-106 [125966]
      3. 2a10
        automatically matched to 2A10 A:4-107
        
        region c:4-107 [125967]
      4. 2a10
        automatically matched to 2A10 A:4-107
        
        region d:4-105 [125968]
      5. 2a10
        automatically matched to 2A10 A:4-107
        
        region e:4-105 [125969]
      6. 2a10
        automatically matched to 2A10 A:4-107
        
        region f:4-105 [125970]
      7. 2a18
        automatically matched to 2A10 A:4-107
        complexed with nh4
        
        region a:4-107 [125974]
      8. 2a18
        automatically matched to 2A10 A:4-107
        complexed with nh4
        
        region b:4-107 [125975]
      9. 2a18
        automatically matched to 2A10 A:4-107
        complexed with nh4
        
        region c:4-107 [125976]
  3. Carboxysome shell protein CcmK2 [143420]
    1. Synechocystis sp. PCC 6803 [TaxId: 1148] [143421] (12)
      SQ P72761 1-101
      1. 2a1b
        mutant
        
        region a:2-102 [125977]
      2. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region b:2-102 [125978]
      3. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region c:2-102 [125979]
      4. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region d:2-102 [125980]
      5. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region e:2-102 [125981]
      6. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region f:2-102 [125982]
      7. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region g:2-102 [125983]
      8. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region h:2-102 [125984]
      9. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region i:2-102 [125985]
      10. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region j:2-102 [125986]
      11. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region k:2-102 [125987]
      12. 2a1b
        automatically matched to 2A1B A:2-102
        mutant
        
        region l:2-102 [125988]
Transposase IS200-like [143422] (1)
contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer
uperfamily
1. Transposase IS200-like [143423] (3)
  Pfam 01797
  1. Putative transposase SSO1474 [143424]
    1. Archaeon Sulfolobus solfataricus [TaxId: 2287] [143425] (4)
      SQ Q97Y68 2-131
      1. 2f5g
        automatically matched to 2F4F A:2-131
        
        region a:2-131 [132991]
      2. 2f5g
        automatically matched to 2F4F A:2-131
        
        region b:2-131 [132992]
      3. 2f4f
        complexed with mn
        
        region a:2-131 [132920]
      4. 2f4f
        automatically matched to 2F4F A:2-131
        complexed with mn
        
        region b:2-131 [132921]
  2. ISHP608 transposase [143426]
    1. Helicobacter pylori [TaxId: 210] [143427] (14)
      SQ Q933Z0 4-133
      1. 2vjv
        automatically matched to d2a6ma1
        complexed with mg
        
        region a:6-130 [153201]
      2. 2vjv
        automatically matched to d2a6ma1
        complexed with mg
        
        region b:6-130 [153202]
      3. 2vju
        automatically matched to d2a6ma1
        complexed with mn
        
        region a:6-131 [153199]
      4. 2vju
        automatically matched to d2a6ma1
        complexed with mn
        
        region b:6-131 [153200]
      5. 2vih
        automatically matched to d2a6ma1
        
        region a:6-131 [153168]
      6. 2vih
        automatically matched to d2a6ma1
        
        region b:6-131 [153169]
      7. 2vic
        automatically matched to d2a6ma1
        complexed with mn
        
        region a:6-131 [153166]
      8. 2vic
        automatically matched to d2a6ma1
        complexed with mn
        
        region b:6-131 [153167]
      9. 2a6o
        automatically matched to 2A6M A:4-133
        
        region a:4-133 [126291]
      10. 2a6o
        automatically matched to 2A6M A:4-133
        
        region b:4-133 [126292]
      11. 2a6m
        
        region a:4-133 [126287]
      12. 2a6m
        automatically matched to 2A6M A:4-133
        
        region b:4-133 [126288]
      13. 2vhg
        automatically matched to d2a6ma1
        complexed with mn
        
        region a:6-131 [153056]
      14. 2vhg
        automatically matched to d2a6ma1
        complexed with mn
        
        region b:6-131 [153057]
  3. Putative transposase DR0177 [143428]
    1. Deinococcus radiodurans [TaxId: 1299] [143429] (2)
      SQ Q9RXX8 1-130
      1. 2fyx
        complexed with gol
        
        region a:1-130 [134411]
      2. 2fyx
        automatically matched to 2FYX A:1-130
        complexed with gol
        
        region b:1-130 [134412]
TTP0101/SSO1404-like [143430] (1)
contains extra C-terminal beta-strand that integrates into the beta-sheet of the other subunit in the homodimer, a probable biological unit of this superfamily
uperfamily
1. TTP0101/SSO1404-like [143431] (3)
  Pfam 02647; DUF196; this family includes recent structure of SSO1404 (PDB entry 2IVY)
  1. Hypothetical protein TTP0101 (TT1823) [143432]
    1. Thermus thermophilus [TaxId: 274] [143433] (1)
      SQ Q746F4 2-83
      1. 1zpw
        
        region x:2-83 [125478]
  2. Hypothetical protein PF1117 [160346]
    1. Pyrococcus furiosus [TaxId: 2261] [160347] (1)
      SQ Q8U1T8 1-84
      1. 2i0x
        
        region a:1-84 [147482]
  3. Hypothetical protein SSO1404 [160348]
    predicted DNA repair associated protein
    1. Sulfolobus solfataricus [TaxId: 2287] [160349] (2)
      SQ Q97YC2 2-89
      1. 2ivy
        automatically matched to 2I8E A:2-89
        
        region a:2-89 [147817]
      2. 2i8e
        complexed with iod
        
        region a:2-89 [147563]
Rnp2-like [160350] (1)
contains extra C-terminal helix
1. Rpp14/Pop5-like [160351] (2)
  Pfam 01900
  1. RNase P protein component 2, Rnp2 [160352]
    1. Pyrococcus horikoshii [TaxId: 53953] [160353] (2)
      SQ O59150 3-120
      1. 2czv
        complexed with acy, bog; mutant
        
        region c:3-120 [145059]
      2. 2czv
        automatically matched to 2CZV C:3-120
        complexed with acy, bog; mutant
        
        region d:3-120 [145060]
    2. Pyrococcus furiosus [TaxId: 2261] [160354] (5)
      SQ Q8U151 15-120
      1. 2av5
        mutant
        
        region a:15-120 [146070]
      2. 2av5
        automatically matched to 2AV5 A:15-120
        mutant
        
        region b:15-120 [146071]
      3. 2av5
        automatically matched to 2AV5 A:15-120
        mutant
        
        region c:15-120 [146072]
      4. 2av5
        automatically matched to 2AV5 A:15-120
        mutant
        
        region d:15-120 [146073]
      5. 2av5
        automatically matched to 2AV5 A:15-120
        mutant
        
        region e:15-120 [146074]
Bacterial polysaccharide co-polymerase-like [160355] (1)
Decorated common fold with extra helical regions, which facilitate oligomerization
1. FepE-like [160356] (3)
  the ferredoxin-like fold resides mainly on in the N-terminal part that corresponds to Pfam 02706 (Wzz)
  1. Chain length determinant protein WzzB [160357]
    1. Salmonella typhimurium [TaxId: 90371] [160358] (5)
      SQ Q04866 54-292
      1. 3b8p
        
        region a:54-292 [154981]
      2. 3b8p
        automatically matched to 3B8P A:54-292
        
        region b:55-292 [154982]
      3. 3b8p
        automatically matched to 3B8P A:54-292
        
        region c:54-292 [154983]
      4. 3b8p
        automatically matched to 3B8P A:54-292
        
        region d:54-292 [154984]
      5. 3b8p
        automatically matched to 3B8P A:54-292
        
        region e:54-292 [154985]
  2. Lipopolysaccharide biosynthesis protein WzzE [160359]
    1. Escherichia coli [TaxId: 562] [160360] (8)
      SQ P0AG01 54-318
      1. 3b8o
        
        region a:55-319 [154973]
      2. 3b8o
        automatically matched to 3B8O A:55-319
        
        region b:55-319 [154974]
      3. 3b8o
        automatically matched to 3B8O A:55-319
        
        region c:55-319 [154975]
      4. 3b8o
        automatically matched to 3B8O A:55-319
        
        region d:55-319 [154976]
      5. 3b8o
        automatically matched to 3B8O A:55-319
        
        region e:55-319 [154977]
      6. 3b8o
        automatically matched to 3B8O A:55-319
        
        region f:55-319 [154978]
      7. 3b8o
        automatically matched to 3B8O A:55-319
        
        region g:55-319 [154979]
      8. 3b8o
        automatically matched to 3B8O A:55-319
        
        region h:55-319 [154980]
  3. Enterochelin transport protein FepE [160361]
    1. Escherichia coli [TaxId: 562] [160362] (12)
      SQ Q8XBV8 64-330! SQ Q8XBV8 65-330
      1. 3b8m
        
        region a:64-330 [154961]
      2. 3b8m
        automatically matched to 3B8M A:64-330
        
        region b:64-330 [154962]
      3. 3b8m
        automatically matched to 3B8M A:64-330
        
        region c:64-330 [154963]
      4. 3b8n
        
        region a:65-330 [154964]
      5. 3b8n
        automatically matched to 3B8N A:65-330
        
        region b:65-330 [154965]
      6. 3b8n
        automatically matched to 3B8N A:65-330
        
        region c:65-330 [154966]
      7. 3b8n
        automatically matched to 3B8N A:65-330
        
        region d:65-330 [154967]
      8. 3b8n
        automatically matched to 3B8N A:65-330
        
        region e:65-330 [154968]
      9. 3b8n
        automatically matched to 3B8N A:65-330
        
        region f:65-330 [154969]
      10. 3b8n
        automatically matched to 3B8N A:65-330
        
        region g:65-330 [154970]
      11. 3b8n
        automatically matched to 3B8N A:65-330
        
        region h:65-330 [154971]
      12. 3b8n
        automatically matched to 3B8N A:65-330
        
        region i:65-330 [154972]
MTH889-like [160363] (1)
assembles into hexameric ring-like structures with the formation of a singe beta-barrel sheet of 24 strands
1. MTH889-like [160364] (2)
  Pfam 02680; DUF211, COG1888
  1. Uncharacterized protein MTH889 [160365]
    1. Methanobacterium thermoautotrophicum [TaxId: 145262] [160366] (7)
      SQ O26975 3-95
      1. 2raq
        complexed with ca
        
        region a:3-95 [151827]
      2. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region b:3-95 [151828]
      3. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region c:3-95 [151829]
      4. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region d:3-95 [151830]
      5. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region e:3-95 [151831]
      6. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region f:3-95 [151832]
      7. 2raq
        automatically matched to 2RAQ A:3-95
        complexed with ca
        
        region g:3-95 [151833]
  2. Uncharacterized protein AF1549 [160367]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160368] (14)
      SQ O28723 1-91
      1. 3bpd
        complexed with mg; mutant
        
        region a:1-91 [155471]
      2. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region b:1-90 [155472]
      3. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region c:1-90 [155473]
      4. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region d:1-91 [155474]
      5. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region e:1-90 [155475]
      6. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region f:1-91 [155476]
      7. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region g:1-90 [155477]
      8. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region h:1-90 [155478]
      9. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region i:1-90 [155479]
      10. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region j:1-90 [155480]
      11. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region k:1-91 [155481]
      12. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region l:1-90 [155482]
      13. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region m:1-90 [155483]
      14. 3bpd
        automatically matched to 3BPD A:1-91
        complexed with mg; mutant
        
        region n:1-90 [155484]
Ribosomal protein L10-like [160369] (1)
consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail
1. Ribosomal protein L10-like [160370] (1)
  Pfam 00466; covers globular domain only
  1. Ribosomal protein L10 [160371]
    see also scop_pr 64661 for a partial structure in the ribosome
    1. Thermotoga maritima [TaxId: 2336] [160372] (3)
      SQ P29394 1-177
      1. 1zav
        
        region a:1-177 [145962]
      2. 1zax
        automatically matched to 1ZAV A:1-177
        
        region a:4-177 [145976]
      3. 1zaw
        automatically matched to 1ZAV A:1-177
        
        region a:1-177 [145969]