Structural Classification of Proteins
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Family: GAPDH-like

has many additional secondary structures

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: FwdE/GAPDH domain-like [55346]
    core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
  4. Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347]
    N-terminal domain is the classic Rossmann-fold
    link to SUPERFAMILY database - Superfamily
  5. Family: GAPDH-like [55348]
    has many additional secondary structures

Protein Domains:

  1. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349]
    1. Escherichia coli [TaxId: 562] [55350] (13) picpic
      SQ P06977
    2. Bacillus stearothermophilus, nca 1503 [TaxId: 1422] [55351] (14) picpic
    3. Achromobacter xylosoxidans [TaxId: 85698] [89987] (1) picpic
      formerly Alcaligenes xylosoxidans
    4. Thermus aquaticus [TaxId: 271] [55352] (13) picpic
    5. Thermus thermophilus [TaxId: 274] [103101] (1) picpic
    6. Thermotoga maritima [TaxId: 2336] [55353] (1) picpic
    7. Archaeon Sulfolobus solfataricus [TaxId: 2287] [55354] (1) picpic
    8. Archaeon Methanothermus fervidus [TaxId: 2180] [55355] (1) picpic
    9. Trypanosoma brucei brucei, glycosome [TaxId: 5702] [55356] (1) picpic
    10. Trypanosoma cruzi [TaxId: 5693] [75483] (7) picpic
    11. Leishmania mexicana [TaxId: 5665] [55357] (5) picpic
    12. American lobster (Homarus americanus) [TaxId: 6706] [55358] (2) picpic
    13. South China Sea lobster (Palinurus versicolor) [TaxId: 150436] [55359] (5) picpic
    14. Human (Homo sapiens) [TaxId: 9606] [55360] (1) picpic
    15. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [103102] (1) picpic
    16. Spinach (Spinacia oleracea) [TaxId: 3562] [69769] (24) picpic
      SQ P19866
    17. Human(Homo sapiens), liver isoform [TaxId: 9606] [143535] (8) picpic
      SQ P04406 151-314
    18. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [143536] (12) picpic
      SQ Q8IKK7 153-318! SQ Q8T6B1 153-318
    19. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143537] (4) picpic
      SQ O59494 140-301
  2. Aspartate beta-semialdehyde dehydrogenase [55361]
    1. Escherichia coli [TaxId: 562] [55362] (4) picpic
      SQ P00353
    2. Vibrio cholerae [TaxId: 666] [82725] (2) picpic
    3. Haemophilus influenzae [TaxId: 727] [103103] (12) picpic
      SQ P44801
    4. Streptococcus pneumoniae [TaxId: 1313] [143538] (11) picpic
      SQ Q8DQ00 128-329
  3. Acetaldehyde dehydrogenase (acylating) [89988]
    1. Pseudomonas sp. [TaxId: 306] [89989] (1) picpic
  4. N-acetyl-gamma-glutamyl-phosphate reductase ArgC [111046]
    1. Thermotoga maritima [TaxId: 2336] [111047] (1) picpic
      SQ Q9X2A2
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118038] (5) picpic
      SQ O82187 15-359
    3. Salmonella typhimurium [TaxId: 90371] [143539] (1) picpic
      SQ Q8ZKL8 154-308
  5. Putative semialdehyde dehydrogenase [143540]
    1. Rice (Oryza sativa) [TaxId: 4530] [143541] (4) picpic
      SQ Q6AV34 219-383
  6. Usg-1 protein homolog PA3116 [143542]
    1. Pseudomonas aeruginosa [TaxId: 287] [143543] (1) picpic
      SQ O87014 130-319
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk