Structural Classification of Proteins
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Fold: Profilin-like

core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

Superfamilies:

  1. Profilin (actin-binding protein) [55770] (1)
    alpha-beta(2)-alpha-beta(5)-alpha
    link to SUPERFAMILY database - Superfamily
    1. Profilin (actin-binding protein) [55771] (8)
      1. Profilin (actin-binding protein) [55772]
        1. Cow (Bos taurus) [TaxId: 9913] [55773] (3)
          1. 1pne picpic
            1. chain a [40866] picpiclink
          2. 2btf picpicxref
            complexed with atp, ch3, sr
            1. chain p [40867] picpiclink
          3. 1hlu picpicxref
            complexed with ace, atp, ca
            1. chain p [40868] picpiclink
        2. Human (Homo sapiens), isoform I [TaxId: 9606] [55774] (9)
          1. 2pbd picpic
            automatically matched to d1fika_
            complexed with atp, ca
            1. region p:1-139 [149354] picpiclink
          2. 2pav picpic
            automatically matched to d1fika_
            complexed with atp, ca
            1. region p:1-139 [149350] picpiclink
          3. 1fil picpic
            complexed with so4
            1. chain a [40869] picpiclink
          4. 3chw picpic
            automatically matched to d1fika_
            complexed with atp, ca
            1. region p:1-139 [156656] picpiclink
          5. 1awi picpic
            1. chain a [40871] picpiclink
            2. chain b [40872] picpiclink
          6. 1fik picpic
            complexed with po4
            1. chain a [40870] picpiclink
          7. 1cf0 picpic
            1. chain a [40873] picpiclink
            2. chain b [40874] picpiclink
          8. 1cjf picpic
            complexed with hom
            1. chain a [40875] picpiclink
            2. chain b [40876] picpiclink
          9. 1pfl picpic
            1. chain a [40877] picpiclink
        3. Human (Homo sapiens), isoform II [TaxId: 9606] [55775] (1)
          1. 1d1j picpic
            1. chain a [40878] picpiclink
            2. chain b [40879] picpiclink
            3. chain c [40880] picpiclink
            4. chain d [40881] picpiclink
        4. Acanthamoeba castellanii [TaxId: 5755] [55776] (5)
          1. 1acf picpic
            1. chain a [40882] picpiclink
          2. 1prq picpic
            1. chain a [40883] picpiclink
          3. 1f2k picpic
            1. chain a [40884] picpiclink
            2. chain b [40885] picpiclink
          4. 2acg picpic
            1. chain a [40886] picpiclink
          5. 2prf picpic
            1. chain a [40887] picpiclink
        5. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55777] (2)
          1. 1ypr picpic
            1. chain a [40888] picpiclink
            2. chain b [40889] picpiclink
          2. 1k0k picpic
            complexed with gol
            1. chain a [67946] picpiclink
        6. Birch (Betula verrucosa) [TaxId: 3505] [55778] (1)
          1. 1cqa picpic
            1. chain a [40890] picpiclink
        7. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [55779] (2)
          1. 3nul picpic
            complexed with gol, so4
            1. chain a [40891] picpiclink
          2. 1a0k picpic
            1. chain a [40892] picpiclink
        8. Para rubber tree (Hevea brasiliensis), hevb8 [TaxId: 3981] [55780] (1)
          1. 1g5u picpic
            complexed with na
            1. chain a [40893] picpiclink
            2. chain b [40894] picpiclink
  2. GAF domain-like [55781] (4)
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
    link to SUPERFAMILY database - Superfamily
    1. GAF domain [55782] (8)
      1. Hypothetical protein ykl069wp [55783]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55784] (1)
          1. 1f5m picpic
            structural genomics
            complexed with br
            1. chain a [40895] picpiclink
            2. chain b [40896] picpiclink
      2. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760]
        GAF B is the nucleotide binding domain; the two domains are connected with a long helix;
        1. Mouse (Mus musculus) [TaxId: 10090] [82761] (1)
          1. 1mc0 picpic
            complexed with pcg; mutant
            1. region a:215-401 [78937] picpiclink
            2. region a:402-555 [78938] picpiclink
      3. Hypothetical protein YebR [103182]
        1. Escherichia coli [TaxId: 562] [103183] (1)
          1. 1vhm picpic
            structural genomics
            complexed with mes
            1. chain a [100691] picpiclink
            2. chain b [100692] picpiclink
      4. Sensor protein PhyB2 [160655]
        1. Rhodopseudomonas palustris [TaxId: 1076] [160656] (2)
          SQ Q6N5G2 140-333
          1. 2ool picpicxrefxref
            complexed with lbv
            1. region a:140-333 [148932] picpiclink
          2. 2ool picpicxrefxref
            automatically matched to 2OOL A:140-333
            complexed with lbv
            1. region b:143-332 [148934] picpiclink
      5. Phytochrome-like protein Cph1 [160657]
        1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160658] (1)
          SQ Q55168 131-326
          1. 2vea picpicxrefxref
            complexed with cyc
            1. region a:131-326 [153022] picpiclink
      6. Sensor protein CYB2465 [160659]
        1. Synechococcus sp. [TaxId: 1131] [160660] (1)
          SQ Q2JIZ5 31-200
          1. 2k2n picpic
            complexed with cyc
            1. region a:31-200 [148261] picpiclink
      7. Bacteriophytochrome BphP [160661]
        1. Pseudomonas aeruginosa [TaxId: 287] [160662] (8)
          SQ Q9HWR3 118-309
          1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with bla
            1. region a:118-309 [155887] picpiclink
          2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region b:118-309 [155890] picpiclink
          3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region c:118-309 [155893] picpiclink
          4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region d:118-309 [155896] picpiclink
          5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region e:118-309 [155899] picpiclink
          6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region f:118-309 [155902] picpiclink
          7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region g:118-309 [155905] picpiclink
          8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:118-309
            complexed with bla
            1. region h:118-309 [155908] picpiclink
        2. Deinococcus radiodurans [TaxId: 1299] [160663] (3)
          SQ Q9RZA4 135-321! SQ Q9RZA4 137-325
          1. 2o9c picpicxref
            automatically matched to 2O9B A:135-321
            complexed with lbv; mutant
            1. region a:135-321 [148684] picpiclink
          2. 2o9b picpicxref
            complexed with lbv; mutant
            1. region a:135-321 [148682] picpiclink
          3. 1ztu picpicxref
            complexed with bla; mutant
            1. region a:137-325 [146024] picpiclink
    2. IclR ligand-binding domain-like [75513] (3)
      Pfam 01614
      1. Transcriptional regulator IclR, C-terminal domain [75514]
        1. Thermotoga maritima [TaxId: 2336] [75515] (1)
          1. 1mkm picpicxref
            complexed with fmt, zn
            1. region a:76-246 [79243] picpiclink
            2. region b:76-246 [79245] picpiclink
        2. Escherichia coli [TaxId: 562] [111112] (9)
          SQ P16528 98-272
          1. 2o9a picpic
            automatically matched to d1td5d_
            complexed with edo, pyr
            1. region a:1-180 [138956] picpiclink
          2. 2o9a picpic
            automatically matched to d1td5d_
            complexed with edo, pyr
            1. region b:1-179 [138957] picpiclink
          3. 2o9a picpic
            automatically matched to d1td5d_
            complexed with edo, pyr
            1. region c:1-180 [138958] picpiclink
          4. 2o9a picpic
            automatically matched to d1td5d_
            complexed with edo, pyr
            1. region d:1-180 [138959] picpiclink
          5. 2o99 picpic
            automatically matched to d1td5d_
            complexed with edo, goa
            1. region a:1-180 [138952] picpiclink
          6. 2o99 picpic
            automatically matched to d1td5d_
            complexed with edo, goa
            1. region b:1-179 [138953] picpiclink
          7. 2o99 picpic
            automatically matched to d1td5d_
            complexed with edo, goa
            1. region c:1-180 [138954] picpiclink
          8. 2o99 picpic
            automatically matched to d1td5d_
            complexed with edo, goa
            1. region d:3-180 [138955] picpiclink
          9. 1td5 picpic
            Structural genomics target
            1. chain a [106767] picpiclink
            2. chain b [106768] picpiclink
            3. chain c [106769] picpiclink
            4. chain d [106770] picpiclink
      2. Transcriptional regulator AllR, C-terminal domain [111113]
        1. Escherichia coli [TaxId: 562] [111114] (1)
          SQ P77734 97-269
          1. 1tf1 picpic
            Structural genomics target
            1. chain a [106826] picpiclink
            2. chain b [106827] picpiclink
            3. chain c [106828] picpiclink
            4. chain d [106829] picpiclink
    3. HrcA C-terminal domain-like [111115] (1)
      Pfam 01628; contains insert domain (140-229) of the Enolase N-terminal domain-like fold (scop_cf 54825)
      1. Heat-inducible transcription repressor HrcA, C-terminal domain [111116]
        1. Thermotoga maritima [TaxId: 2336] [111117] (1)
          SQ Q9WZV5
          1. 1stz picpicxref
            Structural genomics target
            1. region a:101-336 [106010] picpiclink
            2. region b:111-336 [106012] picpiclink
            3. region c:111-336 [106014] picpiclink
    4. Phytochrome-specific domain [160664] (2)
      Pfam 00360
      1. Bacteriophytochrome BphP [160665]
        1. Pseudomonas aeruginosa [TaxId: 287] [160666] (8)
          SQ Q9HWR3 310-494
          1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with bla
            1. region a:310-494 [155888] picpiclink
          2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region b:310-494 [155891] picpiclink
          3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region c:310-494 [155894] picpiclink
          4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region d:310-494 [155897] picpiclink
          5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region e:310-494 [155900] picpiclink
          6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region f:310-494 [155903] picpiclink
          7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region g:310-494 [155906] picpiclink
          8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:310-494
            complexed with bla
            1. region h:310-494 [155909] picpiclink
      2. Phytochrome-like protein Cph1 [160667]
        1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160668] (1)
          SQ Q55168 327-514
          1. 2vea picpicxrefxref
            complexed with cyc
            1. region a:327-514 [153023] picpiclink
  3. PYP-like sensor domain (PAS domain) [55785] (7)
    alpha-beta(2)-alpha(2)-beta(3)
    link to SUPERFAMILY database - Superfamily
    1. PYP-like [55786] (2)
      1. Photoactive yellow protein, PYP [55787]
        1. Ectothiorhodospira halophila [TaxId: 1053] [55788] (43)
          SQ P16113
          1. 1nwz picpic
            ultra-high resolution structure
            complexed with hc4
            1. chain a [86370] picpiclink
          2. 3pyp picpic
            cryotrapped early light cycle intermediate
            complexed with hc4
            1. chain a [40897] picpiclink
          3. 1ot6 picpic
            complexed with hc4; mutant
            1. chain a [93504] picpiclink
          4. 1ot9 picpic
            complexed with hc4
            1. chain a [93510] picpiclink
          5. 2qj7 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:3-125 [150822] picpiclink
          6. 1otb picpic
            complexed with hc4
            1. chain a [93512] picpiclink
          7. 1f9i picpic
            complexed with hc4; mutant
            1. chain a [40898] picpiclink
          8. 1ota picpic
            complexed with hc4; mutant
            1. chain a [93511] picpiclink
          9. 1f98 picpic
            complexed with hc4; mutant
            1. chain a [40899] picpiclink
          10. 1uwn picpic
            complexed with hc4, so4
            1. chain x [100127] picpiclink
          11. 1uwp picpic
            automatically matched to d1nwza_
            complexed with hc4, so4
            1. region x:1-125 [119764] picpiclink
          12. 1kou picpic
            complexed with but, dhc
            1. chain a [72832] picpiclink
          13. 1ugu picpic
            complexed with hc4; mutant
            1. chain a [107839] picpiclink
          14. 2qj5 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:3-125 [150821] picpiclink
          15. 1otd picpic
            complexed with hc4
            1. chain a [93513] picpiclink
            2. chain b [93514] picpiclink
          16. 1d7e picpic
            the p65 crystal form
            complexed with hc4
            1. chain a [40900] picpiclink
          17. 2d01 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:2-125 [131059] picpiclink
          18. 1oti picpic
            complexed with hc4; mutant
            1. chain a [93516] picpiclink
          19. 1s1z picpic
            complexed with hc4; mutant
            1. chain a [105221] picpiclink
          20. 1s1y picpic
            complexed with hc4; mutant
            1. chain a [105220] picpiclink
          21. 1ote picpic
            complexed with hc4; mutant
            1. chain a [93515] picpiclink
          22. 2phy picpic
            complexed with hc4
            1. chain a [40901] picpiclink
          23. 1ts0 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:1-125 [119330] picpiclink
          24. 1t1c picpic
            automatically matched to d1ot6a_
            complexed with hc4; mutant
            1. region a:1-125 [119106] picpiclink
          25. 1ts6 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:1-125 [119331] picpiclink
          26. 1t19 picpic
            automatically matched to d1ot6a_
            complexed with hc4; mutant
            1. region a:1-125 [119103] picpiclink
          27. 1gsv picpic
            complexed with hc4; mutant
            1. chain a [65537] picpiclink
          28. 1t18 picpic
            automatically matched to d1ot6a_
            complexed with hc4; mutant
            1. region a:1-125 [119102] picpiclink
          29. 1gsx picpic
            complexed with hc4; mutant
            1. chain a [65539] picpiclink
          30. 1gsw picpic
            complexed with hc4; mutant
            1. chain a [65538] picpiclink
          31. 2pyp picpic
            photostationary state: 50% ground state, 50% bleached
            complexed with hc4
            1. chain a [40902] picpiclink
          32. 1t1a picpic
            automatically matched to d1ot6a_
            complexed with hc4; mutant
            1. region a:1-125 [119104] picpiclink
          33. 1t1b picpic
            automatically matched to d1ot6a_
            complexed with hc4; mutant
            1. region a:1-125 [119105] picpiclink
          34. 1s4r picpic
            complexed with hc4
            1. chain a [98508] picpiclink
          35. 2pyr picpic
            complexed with hc4
            1. chain a [40903] picpiclink
          36. 1s4s picpic
            complexed with hc4
            1. chain a [98509] picpiclink
          37. 1ts8 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:1-125 [119333] picpiclink
          38. 1ts7 picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:1-125 [119332] picpiclink
          39. 2qws picpic
            automatically matched to d1nwza_
            complexed with hc4
            1. region a:3-125 [151438] picpiclink
          40. 1xfn picpic
            automatically matched to d1odva_
            complexed with hc4
            1. region a:26-125 [121934] picpiclink
          41. 1xfq picpic
            automatically matched to d1odva_
            complexed with hc4
            1. region a:26-125 [121935] picpiclink
          42. 3phy picpic
            dark state (unbleached)
            complexed with hc4
            1. chain a [40904] picpiclink
          43. 1odv picpic
            1-25 deletion mutant
            1. chain a [86887] picpiclink
            2. chain b [86888] picpiclink
      2. PYP domain of sensor histidine kinase Ppr [82762]
        1. Rhodospirillum centenum [TaxId: 34018] [82763] (1)
          1. 1mzu picpic
            complexed with hc4
            1. chain a [79714] picpiclink
            2. chain b [79715] picpiclink
            3. chain c [79716] picpiclink
    2. Heme-binding PAS domain [55789] (3)
      1. Histidine kinase FixL heme domain [55790]
        1. Rhizobium meliloti [TaxId: 382] [55791] (2)
          1. 1ew0 picpic
            complexed with hem
            1. chain a [40905] picpiclink
          2. 1d06 picpic
            complexed with hem; mutant
            1. chain a [40906] picpiclink
        2. Bradyrhizobium japonicum [TaxId: 375] [55792] (17)
          SQ P23222 152-270
          1. 1xj4 picpic
            automatically matched to d1drma_
            complexed with cl, cmo, hem, na
            1. region a:154-259 [122027] picpiclink
          2. 1xj4 picpic
            automatically matched to d1drma_
            complexed with cl, cmo, hem, na
            1. region b:154-257 [122028] picpiclink
          3. 1xj3 picpic
            automatically matched to d1drma_
            complexed with hem
            1. region a:154-259 [122026] picpiclink
          4. 1xj6 picpic
            automatically matched to d1drma_
            complexed with cl, hem, na
            1. region a:154-257 [122029] picpiclink
          5. 1xj6 picpic
            automatically matched to d1drma_
            complexed with cl, hem, na
            1. region b:154-257 [122030] picpiclink
          6. 1xj2 picpic
            automatically matched to d1drma_
            complexed with cmo, hem
            1. region a:154-259 [122025] picpiclink
          7. 1lsw picpic
            complexed with hem
            1. chain a [78181] picpiclink
          8. 1dp6 picpic
            complexed with hem, o2
            1. chain a [40907] picpiclink
          9. 1y28 picpic
            complexed with hem; mutant
            1. chain a [116399] picpiclink
          10. 1drm picpic
            1. chain a [40908] picpiclink
          11. 1lsv picpic
            complexed with cmo, hem
            1. chain a [78180] picpiclink
          12. 1dp9 picpic
            complexed with hem, imd
            1. chain a [40909] picpiclink
          13. 1lt0 picpic
            complexed with cn, hem
            1. chain a [78183] picpiclink
          14. 2owj picpic
            automatically matched to d1drma_
            complexed with cmo, hem
            1. region a:154-259 [139422] picpiclink
          15. 1lsx picpic
            complexed with 1mz, hem
            1. chain a [78182] picpiclink
          16. 1dp8 picpic
            complexed with hem, no
            1. chain a [40911] picpiclink
          17. 2owh picpic
            automatically matched to d1drma_
            complexed with hem
            1. region a:154-259 [139421] picpiclink
      2. Direct oxygen sensor protein, DOS [111118]
        Heme-regulated cyclic AMP phosphodiesterase; formerly hypothetical protein YddU
        1. Escherichia coli [TaxId: 562] [111119] (6)
          SQ P76129 8-126 ! SQ P76129 12-124
          1. 1v9y picpic
            complexed with hem
            1. chain a [108454] picpiclink
            2. chain b [108455] picpiclink
          2. 1vb6 picpic
            automatically matched to d1s66l_
            complexed with hem, oxy
            1. region a:20-133 [119943] picpiclink
          3. 1vb6 picpic
            automatically matched to d1s66l_
            complexed with hem, oxy
            1. region b:20-133 [119944] picpiclink
          4. 1s67 picpic
            complexed with hem, o2
            1. chain l [105303] picpiclink
            2. chain u [105304] picpiclink
          5. 1v9z picpic
            complexed with hem
            1. chain a [108456] picpiclink
            2. chain b [108457] picpiclink
          6. 1s66 picpic
            complexed with hem, o2
            1. chain l [105301] picpiclink
            2. chain u [105302] picpiclink
    3. Flavin-binding PAS domain [88853] (3)
      contains PAC motif
      1. Photoreceptor phy3 flavin-binding domain, lov2 [64354]
        1. Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818] [64355] (2)
          1. 1jnu picpic
            complexed with fmn
            1. chain a [71762] picpiclink
            2. chain b [71763] picpiclink
            3. chain c [71764] picpiclink
            4. chain d [71765] picpiclink
          2. 1g28 picpic
            complexed with fmn
            1. chain a [60216] picpiclink
            2. chain b [60217] picpiclink
            3. chain c [60218] picpiclink
            4. chain d [60219] picpiclink
      2. Putative blue light receptor, phot-lov1 domain [90017]
        1. Green algae (Chlamydomonas reinhardtii) [TaxId: 3055] [90018] (3)
          1. 1n9l picpic
            complexed with fmn, sul
            1. chain a [85468] picpiclink
          2. 1n9n picpic
            complexed with fmn
            1. chain a [85469] picpiclink
          3. 1n9o picpic
            complexed with fmn, so4
            1. chain a [85470] picpiclink
      3. Erg potassium channel, N-terminal domain [55794]
        1. Human (Homo sapiens) [TaxId: 9606] [55795] (1)
          1. 1byw picpic
            mutant
            1. chain a [40912] picpiclink
    4. N-terminal PAS domain of Pas kinase [82764] (1)
      1. N-terminal PAS domain of Pas kinase [82765]
        1. Human (Homo sapiens) [TaxId: 9606] [82766] (1)
          1. 1ll8 picpic
            1. chain a [78089] picpiclink
    5. Hypoxia-inducible factor Hif2a, C-terminal domain [103184] (1)
      contains PAC motif
      1. Hypoxia-inducible factor Hif2a, C-terminal domain [103185]
        endothelial pas domain protein 1, EPAS-1
        1. Human (Homo sapiens) [TaxId: 9606] [103186] (1)
          1. 1p97 picpic
            1. chain a [94382] picpiclink
    6. PAS domain of steroid receptor coactivator 1A, NCo-A1 [103187] (1)
      1. PAS domain of steroid receptor coactivator 1A, NCo-A1 [103188]
        1. Mouse (Mus musculus) [TaxId: 10090] [103189] (1)
          1. 1oj5 picpic
            PAS-B domain; complexed with a lxxll motif peptide, chain B
            complexed with iod; mutant
            1. chain a [93087] picpiclink
    7. BphP N-terminal domain-like [160669] (4)
      Pfam 08446; PAS_2
      1. Sensor protein PhyB2 [160670]
        1. Rhodopseudomonas palustris [TaxId: 1076] [160671] (2)
          SQ Q6N5G2 26-139
          1. 2ool picpicxrefxref
            complexed with lbv
            1. region a:26-139 [148933] picpiclink
          2. 2ool picpicxrefxref
            automatically matched to 2OOL A:26-139
            complexed with lbv
            1. region b:27-138 [148935] picpiclink
      2. Bacteriophytochrome BphP [160672]
        1. Deinococcus radiodurans [TaxId: 1299] [160673] (3)
          SQ Q9RZA4 4-130! SQ Q9RZA4 5-130
          1. 2o9c picpicxref
            automatically matched to 2O9B A:4-130
            complexed with lbv; mutant
            1. region a:4-130 [148685] picpiclink
          2. 2o9b picpicxref
            complexed with lbv; mutant
            1. region a:4-130 [148683] picpiclink
          3. 1ztu picpicxref
            complexed with bla; mutant
            1. region a:5-130 [146025] picpiclink
        2. Pseudomonas aeruginosa [TaxId: 287] [160674] (8)
          SQ Q9HWR3 5-117
          1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with bla
            1. region a:5-117 [155889] picpiclink
          2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region b:5-117 [155892] picpiclink
          3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region c:5-117 [155895] picpiclink
          4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region d:5-117 [155898] picpiclink
          5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region e:5-115 [155901] picpiclink
          6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region f:5-117 [155904] picpiclink
          7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region g:5-117 [155907] picpiclink
          8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 3C2W A:5-117
            complexed with bla
            1. region h:5-117 [155910] picpiclink
      3. Phytochrome-like protein Cph1 [160675]
        1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160676] (1)
          SQ Q55168 4-130
          1. 2vea picpicxrefxref
            complexed with cyc
            1. region a:4-130 [153024] picpiclink
  4. Pheromone-binding domain of LuxR-like quorum-sensing transcription factors [75516] (1)
    alpha(2)-beta(2)-alpha(2)-beta(3)-alpha; possibly related to the PAS domain
    link to SUPERFAMILY database - Superfamily
    1. Pheromone-binding domain of LuxR-like quorum-sensing transcription factors [75517] (1)
      1. Transcription factor TraR, N-terminal domain [75518]
        1. Agrobacterium tumefaciens [TaxId: 358] [75519] (2)
          1. 1l3l picpicxref
            complexed with lae, mse
            1. region a:2-169 [73542] picpiclink
            2. region b:2-169 [73544] picpiclink
            3. region c:1-162 [73546] picpiclink
            4. region d:1-162 [73548] picpiclink
          2. 1h0m picpicxref
            complexed with hsl, mse, ooa
            1. region a:1-165 [76443] picpiclink
            2. region b:1-169 [76445] picpiclink
            3. region c:1-164 [76447] picpiclink
            4. region d:2-169 [76449] picpiclink
  5. Sensory domain-like [103190] (3)
    alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
    link to SUPERFAMILY database - Superfamily
    1. Sensory domain of two-component sensor kinase [103191] (2)
      1. Sensor kinase CitA [103192]
        citrate-binding domain
        1. Klebsiella pneumoniae [TaxId: 573] [103193] (5)
          1. 1p0z picpic
            complexed with flc, mo7, na, omo
            1. chain a [93882] picpiclink
            2. chain b [93883] picpiclink
            3. chain c [93884] picpiclink
            4. chain d [93885] picpiclink
            5. chain e [93886] picpiclink
            6. chain f [93887] picpiclink
            7. chain g [93888] picpiclink
            8. chain h [93889] picpiclink
            9. chain i [93890] picpiclink
            10. chain j [93891] picpiclink
          2. 2j80 picpic
            automatically matched to d1p0za_
            complexed with flc, gol, na, so4
            1. region a:5-132 [147906] picpiclink
          3. 2j80 picpic
            automatically matched to d1p0za_
            complexed with flc, gol, na, so4
            1. region b:6-129 [147907] picpiclink
          4. 2v9a picpic
            automatically matched to d1p0za_
            1. region a:5-130 [152803] picpiclink
          5. 2v9a picpic
            automatically matched to d1p0za_
            1. region b:5-129 [152804] picpiclink
      2. Fumarate sensor DcuS [103194]
        1. Escherichia coli [TaxId: 562] [103195] (2)
          1. 3by8 picpic
            automatically matched to d1ojga_
            complexed with mlt
            1. region a:46-178 [155722] picpiclink
          2. 1ojg picpic
            1. chain a [93128] picpiclink
    2. YkuI C-terminal domain-like [143732] (2)
      PfamB 021678
      1. Hypothetical protein YkuI, C-terminal domain [143733]
        1. Bacillus subtilis [TaxId: 1423] [143734] (2)
          SQ O35014 263-407
          1. 2bas picpicxrefxref
            complexed with bme
            1. region a:263-407 [128245] picpiclink
          2. 2bas picpicxrefxref
            automatically matched to 2BAS A:263-407
            complexed with bme
            1. region b:263-400 [128247] picpiclink
      2. GGDEF family protein VP0354 [160677]
        N-terminal region, consist of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region
        1. Vibrio parahaemolyticus [TaxId: 670] [160678] (4)
          SQ Q87SR8 207-299! SQ Q87SR8 35-206
          1. 2p7j picpic
            complexed with acy, na, so4
            1. region a:181-273 [149287] picpiclink
          2. 2p7j picpic
            complexed with acy, na, so4
            1. region a:9-180 [149288] picpiclink
          3. 2p7j picpic
            automatically matched to 2P7J A:181-273
            complexed with acy, na, so4
            1. region b:181-273 [149289] picpiclink
          4. 2p7j picpic
            automatically matched to 2P7J A:9-180
            complexed with acy, na, so4
            1. region b:9-180 [149290] picpiclink
    3. LuxQ-periplasmic domain-like [160679] (1)
      Pfam 09308; two-domain arrangement similar to the YkuI C-terminal domain-like
      1. Autoinducer 2 sensor kinase/phosphatase LuxQ [160680]
        1. Vibrio harveyi [TaxId: 669] [160681] (4)
          SQ P54302 51-271! SQ P54302 52-270
          1. 2hje picpic
            automatically matched to 2HJ9 C:52-270
            complexed with ni
            1. region a:52-270 [147294] picpiclink
          2. 2hj9 picpicxrefxref
            the second PAS-domain is partly disordered in the crystal
            complexed with ai2
            1. region c:52-270 [145395] picpiclink
          3. 2hj9 picpicxrefxref
            automatically matched to 2HJ9 C:52-270
            complexed with ai2
            1. region d:58-270 [145396] picpiclink
          4. 1zhh picpicxref
            the second PAS-domain is partly disordered in the crystals
            complexed with nhe
            1. region b:51-271 [144740] picpiclink
  6. SNARE-like [64356] (4)
    beta(2)-alpha-beta(3)-alpha(2)
    link to SUPERFAMILY database - Superfamily
    1. Synatpobrevin N-terminal domain [64357] (2)
      1. Sec22b [64358]
        1. Mouse (Mus musculus) [TaxId: 10090] [64359] (1)
          1. 1ifq picpic
            complexed with gol
            1. chain a [62350] picpiclink
            2. chain b [62351] picpiclink
      2. Synaptobrevin homolog 1 ykt6 [64360]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64361] (2)
          1. 1iou picpic
            1. chain a [83699] picpiclink
          2. 1h8m picpic
            1. chain a [60782] picpiclink
    2. Sedlin (SEDL) [82767] (1)
      1. Sedlin (SEDL) [82768]
        1. Mouse (Mus musculus) [TaxId: 10090] [82769] (3)
          1. 2j3w picpicxrefxref
            automatically matched to d1h3qa_
            complexed with p1l
            1. region a:1-140 [137981] picpiclink
          2. 2j3w picpicxrefxref
            automatically matched to d1h3qa_
            complexed with p1l
            1. region c:1-140 [137982] picpiclink
          3. 1h3q picpic
            1. chain a [76652] picpiclink
    3. Clathrin coat assembly domain [75521] (2)
      1. Mu2 adaptin (clathrin coat assembly protein AP50) [75522]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [75523] (1)
          1. 1gw5 picpicxrefxrefxref
            complexed with ihp
            1. region m:1-141 [70632] picpiclink
      2. Sigma2 adaptin (clathrin coat assembly protein AP17) [75524]
        1. Mouse (Mus musculus) [TaxId: 10090] [75525] (1)
          1. 1gw5 picpicxrefxrefxref
            complexed with ihp
            1. chain s [70633] picpiclink
    4. SRP alpha N-terminal domain-like [90019] (2)
      1. Srx domain of the signal recognition particle receptor alpha-subunit [90020]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [90021] (1)
          1. 1nrj picpicxref
            complexed with edo, gtp, mg
            1. chain a [86124] picpiclink
      2. Signal recognition particle receptor alpha subunit, N-terminal domain [143735]
        1. Human (Homo sapiens) [TaxId: 9606] [143736] (2)
          SQ P08240 1-129
          1. 2fh5 picpicxref
            complexed with gtp, mg
            1. region a:1-129 [133477] picpiclink
          2. 2go5 picpicxrefxrefxref
            automatically matched to 2FH5 A:1-129
            1. region 1:1-129 [135430] picpiclink
  7. Roadblock/LC7 domain [103196] (1)
    alpha-beta(2)-alpha-beta(3)-alpha; structurally most similar to the SNARE-like superfamily with a circular permutation of the terminal helices
    link to SUPERFAMILY database - Superfamily
    1. Roadblock/LC7 domain [103197] (6)
      Pfam 03259
      1. Giding protein MglB [103198]
        1. Thermus thermophilus [TaxId: 274] [103199] (1)
          1. 1j3w picpic
            structural genomics
            complexed with mes, mg, so4
            1. chain a [90833] picpiclink
            2. chain b [90834] picpiclink
            3. chain c [90835] picpiclink
            4. chain d [90836] picpiclink
      2. MEK binding partner 1, MP1 [111120]
        remote homolog that forms the characteristic complex structures with other members
        1. Human (Homo sapiens) [TaxId: 9606] [111121] (2)
          SQ Q9UHA4
          1. 3cpt picpic
            automatically matched to d1skoa_
            mutant
            1. region a:3-118 [156903] picpiclink
          2. 1sko picpicxref
            1. chain a [105676] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [111122] (2)
          SQ O88653
          1. 1vet picpicxref
            1. chain a [108553] picpiclink
          2. 1veu picpicxref
            1. chain a [108555] picpiclink
      3. Late endosomal/lysosomal Mp1 interacting protein p14 [111123]
        1. Mouse (Mus musculus) [TaxId: 10090] [111124] (5)
          SQ Q9JHS3
          1. 1vet picpicxref
            1. chain b [108554] picpiclink
          2. 2zl1 picpic
            automatically matched to d1veub_
            mutant
            1. region b:2-117 [154619] picpiclink
          3. 1sko picpicxref
            1. chain b [105677] picpiclink
          4. 1veu picpicxref
            1. chain b [108556] picpiclink
          5. 1szv picpic
            automatically matched to d1veub_
            1. region a:1-123 [119098] picpiclink
      4. Dynein light chain 2A, cytoplasmic [118074]
        1. Human (Homo sapiens) [TaxId: 9606] [118075] (8)
          SQ Q9NP97
          1. 2hz5 picpic
            automatically matched to 2B95 A:11-106
            complexed with cs
            1. region a:5-94 [147460] picpiclink
          2. 2hz5 picpic
            automatically matched to 2B95 A:11-106
            complexed with cs
            1. region b:8-95 [147461] picpiclink
          3. 1z09 picpic
            automatically matched to 2B95 A:11-106
            1. region a:1-96 [145950] picpiclink
          4. 1z09 picpic
            automatically matched to 2B95 A:11-106
            1. region b:97-192 [145951] picpiclink
          5. 2b95 picpic
            1. region a:11-106 [146092] picpiclink
          6. 2b95 picpic
            automatically matched to 2B95 A:11-106
            1. region b:11-106 [146093] picpiclink
          7. 2e8j picpic
            automatically matched to 2B95 A:11-106
            1. region a:1-96 [146726] picpiclink
          8. 2e8j picpic
            automatically matched to 2B95 A:11-106
            1. region b:1-96 [146727] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [160682] (2)
          SQ P62627 1-95
          1. 1y4o picpic
            1. region a:10-104 [145901] picpiclink
          2. 1y4o picpic
            automatically matched to 1Y4O A:10-104
            1. region b:210-304 [145902] picpiclink
  8. YeeU-like [143737] (1)
    beta(2)-alpha-beta(3); 2 layers, a/b; there is an oligomerization interface instead of the 'missing' helical layer
    link to SUPERFAMILY database - Superfamily
    1. YagB/YeeU/YfjZ-like [143738] (3)
      Pfam 06154
      1. Hypothetical protein YfjZ [143739]
        1. Escherichia coli [TaxId: 562] [143740] (2)
          SQ P52141 1-105
          1. 2ea9 picpic
            automatically matched to d2jn7a1
            1. region a:8-110 [146761] picpiclink
          2. 2jn7 picpic
            1. region a:1-105 [138359] picpiclink
      2. Hypothetical protein YeeU [143741]
        1. Escherichia coli [TaxId: 562] [143742] (2)
          SQ P76364 16-122
          1. 2h28 picpic
            complexed with cl, gol, mg
            1. region a:16-122 [135995] picpiclink
          2. 2h28 picpic
            automatically matched to 2H28 A:16-122
            complexed with cl, gol, mg
            1. region b:16-118 [135996] picpiclink
        2. Shigella flexneri [TaxId: 623] [143743] (2)
          SQ Q83JN9 4-120
          1. 2inw picpic
            complexed with po4
            1. region a:4-120 [137533] picpiclink
          2. 2inw picpic
            automatically matched to 2INW A:4-120
            complexed with po4
            1. region b:4-119 [137534] picpiclink
  9. GlcG-like [143744] (1)
    alpha-beta(2)-alpha(3)-beta(2)-alpha; similar to the Roadblock/LC7 domain
    link to SUPERFAMILY database - Superfamily
    1. GlcG-like [143745] (1)
      Pfam 03928; DUF336
      1. DhaI homolog [143746]
        1. Klebsiella pneumoniae [TaxId: 573] [143747] (4)
          SQ Q48422 2-143
          1. 2a2l picpic
            1. region a:4-145 [126035] picpiclink
          2. 2a2l picpic
            automatically matched to 2A2L A:4-145
            1. region b:4-145 [126036] picpiclink
          3. 2a2l picpic
            automatically matched to 2A2L A:4-145
            1. region c:4-145 [126037] picpiclink
          4. 2a2l picpic
            automatically matched to 2A2L A:4-145
            1. region d:4-145 [126038] picpiclink
  10. YNR034W-A-like [160683] (1)
    1. YNR034W-A-like [160684] (1)
      1. Uncharacterized protein YNR034W-A [160685]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [160686] (1)
          SQ Q3E841 1-98
          1. 2grg picpic
            1. region a:1-98 [147159] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk