Structural Classification of Proteins

Superfamily: Ubiquitin-like

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: beta-Grasp (ubiquitin-like) [54235]
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily: Ubiquitin-like [54236]
uperfamily

Families:

Ubiquitin-related [54237] (47)
Pfam 00240
1. Ubiquitin [54238]
  1. Human (Homo sapiens) [TaxId: 9606] [54239] (102)
    SQ P62988
    identical sequence in many other species
    1. 1xd3
      complexed with gve, mg
      1. chain b [115146]
      2. chain d [115148]
    2. 1ogw
      synthetic protein with fluoro-Leu at 50 and 67
      complexed with lef
      1. chain a [87001]
    3. 2zcc
      automatically matched to d1aara_
      complexed with zn
      1. region a:1-70 [154337]
    4. 2zcc
      automatically matched to d1aara_
      complexed with zn
      1. region b:1-70 [154338]
    5. 2zcc
      automatically matched to d1aara_
      complexed with zn
      1. region c:1-71 [154339]
    6. 3by4
      automatically matched to d1aara_
      complexed with 3cn
      1. region b:1-73 [155720]
    7. 2znv
      automatically matched to d1aara_
      complexed with edo, zn; mutant
      1. region c:1-73 [154708]
    8. 2znv
      automatically matched to d1aara_
      complexed with edo, zn; mutant
      1. region f:1-70 [154710]
    9. 2znv
      automatically matched to d1gjza_
      complexed with edo, zn; mutant
      1. region b:1-51 [154707]
    10. 2znv
      automatically matched to d1gjza_
      complexed with edo, zn; mutant
      1. region e:1-51 [154709]
    11. 2d3g
      automatically matched to d1aara_
      1. region a:1-72 [131206]
    12. 2d3g
      automatically matched to d1aara_
      1. region b:1-72 [131207]
    13. 2j7q
      automatically matched to d1aara_
      complexed with gol, gve, mg, pg4
      1. region b:1-75 [138127]
    14. 2j7q
      automatically matched to d1aara_
      complexed with gol, gve, mg, pg4
      1. region d:1-75 [138128]
    15. 1wrd
      automatically matched to d1aara_
      1. region b:1-76 [121194]
    16. 2oob
      automatically matched to d1aara_
      1. region b:1-72 [139167]
    17. 1ubi
      1. chain a [37584]
    18. 1ubq
      1. chain a [37585]
    19. 2hd5
      automatically matched to d1aara_
      complexed with zn
      1. region b:1-76 [136341]
    20. 1uzx
      annotated as bovine in PDB, identical to human sequence
      complexed with mes, mso, so4
      1. chain b [100239]
    21. 2qho
      automatically matched to d1aara_
      1. region a:1-72 [150790]
    22. 2qho
      automatically matched to d1aara_
      1. region c:1-73 [150791]
    23. 2qho
      automatically matched to d1aara_
      1. region e:1-73 [150792]
    24. 2qho
      automatically matched to d1aara_
      1. region g:1-72 [150793]
    25. 2g45
      automatically matched to d1aara_
      complexed with cl, zn
      1. region b:1-76 [134578]
    26. 2g45
      automatically matched to d1aara_
      complexed with cl, zn
      1. region e:1-76 [134579]
    27. 1s1q
      complexed with acy, cu, so4
      1. chain b [98352]
      2. chain d [98354]
    28. 2jf5
      automatically matched to d1aara_
      complexed with cd, cl, co, mg
      1. region a:1-73 [148030]
    29. 2jf5
      automatically matched to d1aara_
      complexed with cd, cl, co, mg
      1. region b:1-73 [148031]
    30. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region b:1-74 [130070]
    31. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region d:1-74 [130072]
    32. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region f:1-74 [130073]
    33. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region h:1-73 [130075]
    34. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region j:1-72 [130077]
    35. 2c7n
      automatically matched to d1aara_
      complexed with zn
      1. region l:1-74 [130078]
    36. 2c7m
      automatically matched to d1aara_
      complexed with zn
      1. region b:1-74 [130068]
    37. 2ibi
      automatically matched to d1aara_
      complexed with neh, zn; mutant
      1. region b:1-75 [137194]
    38. 3c0r
      automatically matched to d1aara_
      complexed with 3cn
      1. region b:1-73 [155839]
    39. 3c0r
      automatically matched to d1aara_
      complexed with 3cn
      1. region d:1-73 [155840]
    40. 2o6v
      automatically matched to d1gjza_
      complexed with mes, slz, so4; mutant
      1. region b:101-151 [138923]
    41. 2o6v
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
      1. region a:1-75 [138922]
    42. 2o6v
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
      1. region c:201-276 [138924]
    43. 2o6v
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
      1. region e:401-475 [138925]
    44. 2o6v
      automatically matched to d1aara_
      complexed with mes, slz, so4; mutant
      1. region g:601-676 [138927]
    45. 2o6v
      automatically matched to d1gjza_
      complexed with mes, slz, so4; mutant
      1. region f:501-551 [138926]
    46. 2o6v
      complexed with mes, slz, so4; mutant
      1. region d:301-376 [145715]
    47. 2o6v
      automatically matched to 2O6V D:301-376
      complexed with mes, slz, so4; mutant
      1. region h:702-776 [145716]
    48. 1aar
      di-ubiquitin
      1. chain a [37586]
      2. chain b [37587]
    49. 1nbf
      complex with USP7
      complexed with glz
      1. chain c [80389]
      2. chain d [80390]
    50. 2fif
      automatically matched to d1aara_
      complexed with so4, zn
      1. region a:1-73 [133518]
    51. 2fif
      automatically matched to d1aara_
      complexed with so4, zn
      1. region c:1-73 [133520]
    52. 2fif
      automatically matched to d1aara_
      complexed with so4, zn
      1. region e:1-73 [133522]
    53. 1wr6
      automatically matched to d1aara_
      1. region e:1-72 [121186]
    54. 1wr6
      automatically matched to d1aara_
      1. region f:1-73 [121187]
    55. 1wr6
      automatically matched to d1aara_
      1. region g:1-72 [121188]
    56. 1wr6
      automatically matched to d1aara_
      1. region h:1-74 [121189]
    57. 3dvg
      automatically matched to d1aara_
      mutant
      1. region x:1-73 [157892]
    58. 3dvg
      automatically matched to d1gjza_
      mutant
      1. region y:1-51 [157893]
    59. 3dvn
      automatically matched to d1aara_
      mutant
      1. region u:1-73 [157902]
    60. 3dvn
      automatically matched to d1aara_
      mutant
      1. region x:1-73 [157904]
    61. 3dvn
      automatically matched to d1gjza_
      mutant
      1. region v:1-51 [157903]
    62. 3dvn
      automatically matched to d1gjza_
      mutant
      1. region y:1-51 [157905]
    63. 1tbe
      tetra-ubiquitin
      1. chain a [37588]
      2. chain b [37589]
    64. 1f9j
      a new crystal form of tetraubiquitin
      1. chain a [37590]
      2. chain b [37591]
    65. 2gmi
      automatically matched to d1aara_
      mutant
      1. region c:501-576 [135382]
    66. 2fid
      automatically matched to d1aara_
      complexed with zn
      1. region a:1-73 [133516]
    67. 2hth
      automatically matched to d1aara_
      1. region a:1-73 [136742]
    68. 1yd8
      automatically matched to d1aara_
      1. region u:1-73 [122974]
    69. 1yd8
      automatically matched to d1aara_
      1. region v:1-73 [122975]
    70. 2pe9
      automatically matched to d1aara_
      1. region a:1-72 [149399]
    71. 2pe9
      automatically matched to d1aara_
      1. region b:1-72 [149400]
    72. 2pea
      automatically matched to d1aara_
      1. region a:1-72 [149401]
    73. 2pea
      automatically matched to d1aara_
      1. region b:1-72 [149402]
    74. 1d3z
      1. chain a [37592]
    75. 2k6d
      automatically matched to d1aara_
      1. region b:1-73 [148276]
    76. 2z59
      automatically matched to d1aara_
      1. region b:1-73 [154162]
    77. 2nr2
      automatically matched to d1aara_
      1. region a:1-76 [138518]
    78. 1gjz
      1. chain a [65223]
      2. chain b [65224]
    79. 1zgu
      mutant
      1. region b:1-76 [125062]
    80. 2bgf
      automatically matched to d1aara_
      1. region a:1-76 [128476]
    81. 2bgf
      automatically matched to d1aara_
      1. region b:1-76 [128477]
    82. 1xqq
      automatically matched to d1aara_
      1. region a:1-76 [122240]
    83. 2dx5
      automatically matched to d1aara_
      1. region b:1-73 [131867]
    84. 2den
      automatically matched to d1aara_
      mutant
      1. region b:1-76 [131432]
    85. 1fxt
      1. chain b [65056]
    86. 2jy6
      automatically matched to d1aara_
      1. region a:1-73 [148238]
    87. 2k39
      automatically matched to d1aara_
      1. region a:1-73 [148263]
    88. 2jri
      automatically matched to d1aara_
      1. region b:183-255 [148185]
    89. 2jri
      automatically matched to d1aara_
      1. region c:259-331 [148186]
    90. 2ayo
      automatically matched to d1aara_
      1. region b:1-76 [127567]
    91. 2fuh
      automatically matched to d1aara_
      1. region b:1-76 [134174]
    92. 1yx6
      automatically matched to d1aara_
      1. region b:1-76 [124173]
    93. 1yx5
      automatically matched to d1aara_
      1. region b:1-76 [124172]
    94. 1g6j
      Structure in aot reverse micelles
      1. chain a [60319]
    95. 1q5w
      complexed with zn
      1. chain b [95946]
    96. 1v80
      automatically matched to d1aara_
      1. region a:1-76 [119867]
    97. 1v81
      automatically matched to d1aara_
      1. region a:1-76 [119868]
    98. 2jzz
      automatically matched to d1aara_
      1. region a:1-73 [148251]
    99. 1p3q
      annotated as bovine in PDB, identical to human sequence
      complexed with mse; mutant
      1. chain u [87750]
      2. chain v [87751]
    100. 1sif
      a multiple hydrophobic core mutant
      1. chain a [105574]
    101. 1ud7
      designed hydrophobic core mutant
      1. chain a [37593]
    102. 1c3t
      designed hydrophobic core mutant
      1. chain a [37594]
  2. Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932] [89830] (7)
    1. 3cmm
      automatically matched to d1otrb_
      complexed with pro
      1. region b:1-76 [156833]
    2. 3cmm
      automatically matched to d1otrb_
      complexed with pro
      1. region d:1-76 [156834]
    3. 1otr
      1. chain b [87414]
    4. 1q0w
      1. chain b [95516]
    5. 2g3q
      automatically matched to d1otrb_
      1. region b:1-76 [134569]
    6. 2jt4
      automatically matched to d1otrb_
      1. region b:1-76 [148198]
    7. 1wr1
      automatically matched to d1otrb_
      1. region a:1-76 [121184]
  3. Synthetic, based on Saccharomyces cerevisiae sequence [54240] (1)
    1. 1cmx
      nearly completely disordered chain D in the crystal structure
      1. chain b [37595]
      2. chain d [37596]
2. SUMO-1 (smt3 homologue) [54241]
  1. Human (Homo sapiens) [TaxId: 9606] [54242] (17)
    SQ Q93068
    1. 2uyz
      automatically matched to d1tgzb_
      complexed with na; mutant
      1. region b:20-96 [140039]
    2. 1wyw
      automatically matched to d1tgzb_
      complexed with cl, mg, na
      1. region b:20-97 [121468]
    3. 2vrr
      automatically matched to d1tgzb_
      complexed with fmt, na
      1. region b:20-97 [153523]
    4. 2bf8
      automatically matched to d1tgzb_
      1. region b:21-97 [128412]
    5. 2pe6
      automatically matched to d1tgzb_
      1. region b:21-94 [139668]
    6. 2iy1
      automatically matched to d1tgzb_
      mutant
      1. region b:15-92 [137788]
    7. 2iy1
      automatically matched to d1tgzb_
      mutant
      1. region d:15-92 [137789]
    8. 2iy0
      automatically matched to d1tgzb_
      mutant
      1. region b:22-97 [137787]
    9. 1y8r
      automatically matched to d1tgzb_
      complexed with atp, mg, zn
      1. region c:20-97 [122761]
    10. 1y8r
      automatically matched to d1tgzb_
      complexed with atp, mg, zn
      1. region f:20-97 [122762]
    11. 1tgz
      complexed with so4
      1. chain b [106902]
    12. 2g4d
      automatically matched to d1tgzb_
      mutant
      1. region b:20-97 [134590]
    13. 2g4d
      automatically matched to d1tgzb_
      mutant
      1. region d:20-97 [134591]
    14. 1z5s
      automatically matched to d1tgzb_
      1. region b:20-97 [124492]
    15. 1a5r
      1. chain a [37597]
    16. 2io2
      automatically matched to d1tgzb_
      mutant
      1. region b:23-97 [137540]
    17. 2asq
      automatically matched to d1tgzb_
      1. region a:21-97 [127269]
  2. Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932] [54243] (4)
    1. 1euv
      1. chain b [37598]
    2. 2eke
      automatically matched to d1euvb_
      mutant
      1. region c:1020-1095 [132283]
    3. 2eke
      automatically matched to d1euvb_
      mutant
      1. region d:1020-1094 [132284]
    4. 1l2n
      1. chain a [73508]
3. Nedd8 [54244]
  1. Human (Homo sapiens) [TaxId: 9606] [54245] (7)
    SQ Q15843
    1. 1ndd
      complexed with cli, so4
      1. chain a [37599]
      2. chain b [37600]
      3. chain c [37601]
      4. chain d [37602]
    2. 2bkr
      automatically matched to d1nddb_
      1. region b:1-76 [128711]
    3. 1xt9
      1. chain b [116014]
    4. 2nvu
      automatically matched to d1nddb_
      complexed with atp, mg, zn; mutant
      1. region i:1-76 [138663]
    5. 2nvu
      automatically matched to d1nddb_
      complexed with atp, mg, zn; mutant
      1. region j:1-76 [138664]
    6. 1r4m
      complexed with APPBP1 and UBA3
      complexed with zn; mutant
      1. chain i [97007]
      2. chain j [97008]
      3. chain k [97009]
      4. chain l [97010]
    7. 1r4n
      complexed with APPBP1 and UBA3
      complexed with atp, zn; mutant
      1. chain i [97019]
      2. chain j [97020]
      3. chain k [97021]
      4. chain l [97022]
4. Elongin B [54246]
  1. Human (Homo sapiens) [TaxId: 9606] [54247] (7)
    1. 2c9w
      automatically matched to d1lm8b_
      complexed with ni, so4
      1. region b:2-104 [130145]
    2. 1lm8
      complexed with hyp
      1. chain b [74033]
    3. 1lqb
      complexed with hyp, so4
      1. chain a [74184]
    4. 2izv
      automatically matched to d1lm8b_
      complexed with cl, edo, na
      1. region b:1-105 [137828]
    5. 3dcg
      automatically matched to d1lm8b_
      1. region a:1-100 [157535]
    6. 1vcb
      1. chain a [37603]
      2. chain d [37604]
      3. chain g [37605]
      4. chain j [37606]
    7. 2jz3
      automatically matched to d1lm8b_
      1. region b:1-106 [148243]
  2. Mouse (Mus musculus) [TaxId: 10090] [142930] (1)
    SQ P62869 1-98
    1. 2fnj
      1. region b:1-98 [133819]
5. Rub1 [54248]
  1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [54249] (1)
    1. 1bt0
      complexed with edo, zn; mutant
      1. chain a [37607]
6. Ubiquitin-like modifier protein hub1 [82579]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82580] (1)
    1. 1m94
      1. chain a [78865]
7. Ubiquitin-like N-terminal domain of PLIC-2 [75358]
  1. Human (Homo sapiens) [TaxId: 9606] [75359] (1)
    1. 1j8c
      1. chain a [71601]
8. Ubiquitin-like domain of parkin [89831]
  1. Human (Homo sapiens) [TaxId: 9606] [89832] (1)
    1. 1iyf
      1. chain a [83789]
  2. Mouse (Mus musculus) [TaxId: 10090] [89833] (2)
    1. 2zeq
      automatically matched to d1mg8a_
      1. region a:1-78 [154405]
    2. 1mg8
      1. chain a [84958]
9. Ubiquitin-like domain of Rad23 homolog A (Hhr23a) [102775]
  1. Human (Homo sapiens) [TaxId: 9606] [102776] (4)
    1. 1p98
      1. chain a [94383]
    2. 1oqy
      flexible linkers excluded
      1. region a:1-77 [93442]
    3. 1qze
      1. region a:1-77 [96632]
    4. 1p9d
      complexed with the C-terminal ubiquitin-interacting motif of the proteasome subunit s5a
      1. chain u [94388]
10. Ubiquitin-like domain of Rad23 homolog B (Hhr23B) [102777]
  1. Human (Homo sapiens) [TaxId: 9606] [102778] (2)
    SQ P54727 1-82
    1. 1uel
      complexed with the C-terminal ubiquitin-interacting motif of the proteasome subunit s5a
      1. chain a [99265]
    2. 1p1a
      1. chain a [104059]
11. Ubiquitin-like protein 5, ubl5 [102779]
  1. Human (Homo sapiens) [TaxId: 9606] [102780] (1)
    1. 1p0r
      1. chain a [93871]
  2. Mouse (Mus musculus) [TaxId: 10090] [102781] (1)
    1. 1uh6
      1. chain a [99394]
12. Hypothetical protein At3g01050 [102782]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [102783] (1)
    1. 1se9
      1. chain a [98821]
13. Ubiquitin-like protein 3300001g02rik [102784]
  1. Mouse (Mus musculus) [TaxId: 10090] [102785] (1)
    1. 1v2y
      structural genomics
      1. chain a [100275]
14. Ubiquitin-like domain of tubulin folding cofactor B [102786]
  1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [102787] (1)
    1. 1t0y
      1. chain a [99066]
  2. Mouse (Mus musculus) [TaxId: 10090] [117798] (1)
    SQ Q9D1E6 11-92
    1. 1v6e
      mutant
      1. chain a [113547]
15. 1700011n24rik protein [110796]
  1. Mouse (Mus musculus) [TaxId: 10090] [110797] (1)
    SQ Q9DAF3 1-89
    1. 1v5o
      Structural genomics target
      1. chain a [108381]
16. 8430435i17rik protein [110798]
  1. Mouse (Mus musculus) [TaxId: 10090] [110799] (1)
    SQ Q8BGR9 3-79
    1. 1v5t
      Structural genomics target
      1. chain a [108385]
17. hypothetical D7wsu128e protein [110800]
  1. Mouse (Mus musculus) [TaxId: 10090] [110801] (1)
    SQ Q78JW9 76-157
    1. 1v86
      Structural genomics target
      1. chain a [108421]
18. Splicing factor 3 subunit 1, C-terminal domain [117799]
  1. Mouse (Mus musculus) [TaxId: 10090] [117800] (1)
    SQ Q8K4Z5 685-786
    1. 1we7
      Structural genomics target
      1. chain a [114547]
  2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117801] (1)
    SQ Q8RXF1 683-780; T5E21.13/At1g14650
    1. 1we6
      Structural genomics target
      1. chain a [114546]
  3. Human (Homo sapiens) [TaxId: 9606] [142931] (1)
    SQ Q15459 704-789
    1. 1zkh
      1. region a:1-86 [125198]
19. Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 [117802]
  1. Human (Homo sapiens) [TaxId: 9606] [117803] (1)
    SQ Q15011 10-90
    1. 1wgd
      Structural genomics target
      1. chain a [114610]
20. Ubiquitin carboxyl-terminal hydrolase 14 [117804]
  1. Mouse (Mus musculus) [TaxId: 10090] [117805] (1)
    SQ Q9JMA1 3-85
    1. 1wgg
      Structural genomics target
      1. chain a [114612]
21. Ubiquitin-like protein 3, Ubl3 [117806]
  1. Mouse (Mus musculus) [TaxId: 10090] [117807] (1)
    SQ Q9Z2M6 1-103
    1. 1wgh
      Structural genomics target
      1. chain a [114613]
22. 2'-5'-oligoadenylate synthetase-like protein, OASL [117808]
  1. Human (Homo sapiens) [TaxId: 9606] [117809] (1)
    SQ Q15646 434-507
    1. 1wh3
      Structural genomics target
      1. chain a [114631]
23. Ubiquitin-like protein bab25500 (2010008E23Rik) [117810]
  1. Mouse (Mus musculus) [TaxId: 10090] [117811] (1)
    SQ Q9D8C5 163-244
    1. 1wia
      Structural genomics target
      1. chain a [114664]
24. Tubulin-folding protein TbcE [117812]
  1. Mouse (Mus musculus) [TaxId: 10090] [117813] (1)
    SQ Q8CIV8 441-524
    1. 1wjn
      Structural genomics target
      1. chain a [114703]
25. NEDD8 ultimate buster-1, NUB1 [117814]
  1. Human (Homo sapiens) [TaxId: 9606] [117815] (1)
    SQ Q9Y5A7 75-161
    1. 1wju
      Structural genomics target
      1. chain a [114712]
26. SUMO-2 [117816]
  1. Human (Homo sapiens) [TaxId: 9606] [117817] (13)
    SQ P61956
    1. 1wm3
      1. chain a [114736]
    2. 1wm2
      1. chain a [114735]
    3. 2d07
      automatically matched to d1wm2a_
      1. region b:15-89 [131063]
    4. 2io0
      automatically matched to d1wm2a_
      complexed with so4; mutant
      1. region b:16-89 [137536]
    5. 2io1
      automatically matched to d1wm2a_
      mutant
      1. region b:15-88 [137537]
    6. 2io1
      automatically matched to d1wm2a_
      mutant
      1. region d:15-88 [137538]
    7. 2io1
      automatically matched to d1wm2a_
      mutant
      1. region f:15-88 [137539]
    8. 2ckh
      1. region b:14-92 [130566]
    9. 2iyd
      automatically matched to 2CKH B:14-92
      1. region b:14-92 [137800]
    10. 2rpq
      automatically matched to d2ckhb1
      1. region a:15-93 [152179]
    11. 2io3
      automatically matched to 2CKH B:14-92
      mutant
      1. region b:20-93 [137541]
    12. 1wz0
      1. region a:8-100 [121475]
    13. 2awt
      automatically matched to d1wm2a_
      1. region a:12-89 [127475]
27. Bag-family molecular chaperone regulator-1 [142932]
  1. Human (Homo sapiens) [TaxId: 9606] [142933] (1)
    SQ Q99933 72-152
    the BAG domain structure is also known (scop_sp 63494)
    1. 1wxv
      1. region a:7-87 [121409]
28. NPL4-like protein 1 [142934]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [142935] (1)
    SQ Q9LYC2 2-95
    1. 1wf9
      1. region a:8-101 [120968]
29. Interferon-induced 15 kDa protein [142936]
  1. Human (Homo sapiens) [TaxId: 9606] [142937] (2)
    SQ P05161 2-77! SQ P05161 78-153
    1. 1z2m
      complexed with os4; mutant
      1. region a:3-78 [124387]
    2. 1z2m
      complexed with os4; mutant
      1. region a:79-154 [124388]
30. Ubiquitin-like protein smt3a, SUMO-3 [142938]
  1. Human (Homo sapiens) [TaxId: 9606] [142939] (1)
    SQ P55854 14-92
    1. 1u4a
      mutant
      1. region a:14-92 [119526]
31. DSK2 [142940]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142941] (5)
    SQ P48510 2-74
    1. 2bwf
      automatically matched to 2BWE S:2-74
      complexed with fmt
      1. region a:2-74 [129363]
    2. 2bwf
      automatically matched to 2BWE S:2-74
      complexed with fmt
      1. region b:2-74 [129364]
    3. 2bwe
      1. region s:2-74 [129360]
    4. 2bwe
      automatically matched to 2BWE S:2-74
      1. region t:2-74 [129361]
    5. 2bwe
      automatically matched to 2BWE S:2-74
      1. region u:3-74 [129362]
32. Ubiquitin-like protein 7 [142942]
  1. Mouse (Mus musculus) [TaxId: 10090] [142943] (1)
    SQ Q91W67 1-94
    1. 1x1m
      1. region a:8-101 [121592]
33. Ubiquitin-like PHD and RING finger domain-containing protein 2 [142944]
  1. Human (Homo sapiens) [TaxId: 9606] [142945] (1)
    SQ Q96PU4 1-76
    1. 1wy8
      1. region a:8-83 [121437]
34. Ubiquilin-3 [142946]
  1. Human (Homo sapiens) [TaxId: 9606] [142947] (2)
    SQ Q9H347 11-104! SQ Q9H347 15-98
    1. 1yqb
      1. region a:15-98 [123876]
    2. 1wx7
      1. region a:7-100 [121392]
35. Ubiquitin-like PHD and RING finger domain-containing protein 1 [142948]
  1. Human (Homo sapiens) [TaxId: 9606] [142949] (2)
    SQ Q96T88 1-76
    1. 2faz
      1. region a:1-76 [133223]
    2. 2faz
      automatically matched to 2FAZ A:1-76
      1. region b:1-72 [133224]
36. 4931431F19Rik [142950]
  1. Mouse (Mus musculus) [TaxId: 10090] [142951] (1)
    SQ Q9D4I8 14-96
    structure of the C-terminal UBA domain is also known (PDB 1vej)
    1. 1wx8
      1. region a:8-90 [121393]
37. Large proline-rich protein BAT3 [142952]
  1. Human (Homo sapiens) [TaxId: 9606] [142953] (1)
    SQ P46379 17-89
    1. 1wx9
      1. region a:8-80 [121394]
38. Dendritic cell-derived ubiquitin-like protein [142954]
  1. Human (Homo sapiens) [TaxId: 9606] [142955] (1)
    SQ Q8WUN7 149-228
    1. 1ttn
      1. region a:21-100 [119340]
UBX domain [54250] (5)
Pfam 00789
1. Fas-associated factor 1, Faf1 [54251]
  1. Human (Homo sapiens) [TaxId: 9606] [54252] (1)
    1. 1h8c
      1. chain a [37608]
2. p47 [64221]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [64222] (3)
    1. 1i42
      1. chain a [61651]
    2. 1jru
      1. chain a [63257]
    3. 1s3s
      complexed with the p97/VCP ND1; chain I is mostly disordered in the crystal structure
      complexed with adp
      1. chain g [98457]
      2. chain h [98458]
      3. chain i [98459]
3. Hypothetical protein KIAA0794 [117818]
  1. Human (Homo sapiens) [TaxId: 9606] [117819] (1)
    SQ O94888 376-487
    1. 1wj4
      Structural genomics target
      1. chain a [114691]
4. UBX domain-containing protein 6 (Reproduction 8) [142956]
  1. Mouse (Mus musculus) [TaxId: 10090] [142957] (1)
    SQ Q9QZ49 182-277
    1. 2cr5
      1. region a:8-103 [130733]
5. Tether containing UBX domain for GLUT4 (Tug) [142958]
  1. Mouse (Mus musculus) [TaxId: 10090] [142959] (1)
    SQ Q8VBT9 10-85
    1. 2al3
      1. region a:10-85 [126957]
GABARAP-like [54253] (5)
intracellular membrane trafficking and fusion proteins
1. Golgi-associated ATPase enhancer of 16 kD, Gate-16 [54254]
  1. Cow (Bos taurus) [TaxId: 9913] [54255] (1)
    1. 1eo6
      1. chain a [37609]
      2. chain b [37610]
2. GABA(A) receptor associated protein GABARAP [69658]
  1. Human (Homo sapiens) [TaxId: 9606] [69659] (6)
    1. 3d32
      automatically matched to d1kota_
      complexed with cl, na, nh2
      1. region a:1-118 [157267]
    2. 3d32
      automatically matched to d1kota_
      complexed with cl, na, nh2
      1. region b:3-118 [157268]
    3. 1gnu
      complexed with ni
      1. chain a [65403]
    4. 1kot
      1. chain a [68732]
    5. 1klv
      1. chain a [90965]
    6. 1km7
      1. chain a [90966]
  2. Rat (Rattus norvegicus) [TaxId: 10116] [75360] (1)
    1. 1kjt
      complexed with na, ni
      1. chain a [72622]
3. Microtubule-associated proteins 1A/1B light chain 3B [110802]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [110803] (4)
    SQ Q62625 4-116
    1. 2z0d
      automatically matched to d1ugma_
      mutant
      1. region b:5-117 [140096]
    2. 2z0e
      automatically matched to d1ugma_
      mutant
      1. region b:5-117 [140097]
    3. 1ugm
      1. chain a [107827]
    4. 2k6q
      automatically matched to d1ugma_
      1. region a:5-117 [148277]
  2. Human (Homo sapiens) [TaxId: 9606] [117820] (3)
    SQ Q9GZQ8
    1. 2zjd
      automatically matched to d1v49a_
      1. region a:2-120 [154484]
    2. 2zjd
      automatically matched to d1v49a_
      1. region c:2-120 [154485]
    3. 1v49
      1. chain a [113525]
First domain of FERM [54256] (7)
1. Moesin [54257]
  1. Human (Homo sapiens) [TaxId: 9606] [54258] (3)
    SQ P26038 4-297
    1. 1ef1
      complexed with so4
      1. region a:4-87 [37611]
      2. region b:4-87 [37612]
    2. 1e5w
      1. region a:1-87 [59282]
    3. 1sgh
      1. region a:4-87 [105531]
2. Radixin [54259]
  1. Mouse (Mus musculus) [TaxId: 10090] [54260] (20)
    1. 2zpy
      automatically matched to d1gc6a3
      1. region a:3-87 [154760]
    2. 1j19
      complexed with the icam-2 cytoplasmic peptide, chain B
      1. region a:2-87 [83960]
    3. 2d10
      automatically matched to d1gc6a3
      1. region a:3-87 [131099]
    4. 2d10
      automatically matched to d1gc6a3
      1. region b:3-87 [131102]
    5. 2d10
      automatically matched to d1gc6a3
      1. region c:3-87 [131105]
    6. 2d10
      automatically matched to d1gc6a3
      1. region d:3-87 [131108]
    7. 1gc7
      1. region a:1-87 [37613]
    8. 2d11
      automatically matched to d1gc6a3
      1. region a:3-87 [131111]
    9. 2d11
      automatically matched to d1gc6a3
      1. region b:3-87 [131114]
    10. 2d11
      automatically matched to d1gc6a3
      1. region c:3-87 [131117]
    11. 2d11
      automatically matched to d1gc6a3
      1. region d:3-87 [131120]
    12. 2d2q
      automatically matched to d1gc6a3
      1. region a:3-87 [131184]
    13. 2d2q
      automatically matched to d1gc6a3
      1. region b:3-87 [131187]
    14. 1gc6
      complexed with i3p
      1. region a:1-87 [37614]
    15. 2ems
      automatically matched to d1gc6a3
      1. region a:2-87 [146927]
    16. 2emt
      automatically matched to d1gc6a3
      1. region a:2-87 [146930]
    17. 2emt
      automatically matched to d1gc6a3
      1. region b:2-87 [146933]
    18. 2yvc
      automatically matched to d1gc6a3
      1. region a:3-87 [140080]
    19. 2yvc
      automatically matched to d1gc6a3
      1. region b:3-87 [140083]
    20. 2yvc
      automatically matched to d1gc6a3
      1. region c:5-87 [140086]
3. Ezrin [82581]
  1. Human (Homo sapiens) [TaxId: 9606] [82582] (1)
    1. 1ni2
      1. region a:2-87 [80527]
      2. region b:2-87 [80530]
4. Erythroid membrane protein 4.1R [54261]
  1. Human (Homo sapiens) [TaxId: 9606] [54262] (1)
    1. 1gg3
      1. region a:1-81 [37615]
      2. region b:1-81 [37616]
      3. region c:1-81 [37617]
5. Merlin [69660]
  the neurofibromatosis 2 tumor suppressor protein
  1. Human (Homo sapiens) [TaxId: 9606] [69661] (1)
    1. 1h4r
      complexed with so4
      1. region a:20-103 [65618]
      2. region b:20-103 [65621]
  2. Mouse (Mus musculus) [TaxId: 10090] [75361] (1)
    1. 1isn
      1. region a:18-103 [71402]
6. Focal adhesion kinase 1 [142960]
  1. Chicken (Gallus gallus) [TaxId: 9031] [142961] (5)
    SQ Q00944 31-130
    1. 2al6
      binds linker segment 394-403 as an extra beta-strand
      1. region a:31-130 [126968]
    2. 2al6
      automatically matched to 2AL6 A:31-130
      1. region b:33-130 [126971]
    3. 2aeh
      automatically matched to 2AL6 A:31-130
      1. region a:33-130 [126627]
    4. 2aeh
      automatically matched to 2AL6 A:31-130
      1. region b:33-130 [126630]
    5. 2j0m
      automatically matched to d2al6a3
      complexed with 4st
      1. region a:31-130 [147847]
Ras-binding domain, RBD [54263] (16)
contains Pfam 00788 and Pfam 02196
1. c-Raf1 RBD [54264]
  1. Human (Homo sapiens) [TaxId: 9606] [54265] (3)
    1. 1c1y
      complexed with ca, gtp, mg
      1. chain b [37618]
    2. 1gua
      complexed with ca, gnp, mg; mutant
      1. chain b [37619]
    3. 1rfa
      1. chain a [37620]
  2. Rat (Rattus norvegicus) [TaxId: 10116] [54266] (1)
    1. 1rrb
      1. chain a [37621]
2. Ral guanosine-nucleotide exchange factor, RalGDS [54267]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [54268] (2)
    1. 1lfd
      complexed with gnp, mg; mutant
      1. chain a [37622]
      2. chain c [37623]
    2. 1lxd
      mutant
      1. chain a [37624]
      2. chain b [37625]
  2. Human (Homo sapiens) [TaxId: 9606] [54269] (3)
    1. 2b3a
      automatically matched to d2rgf__
      1. region a:11-97 [127785]
    2. 1rax
      1. chain a [37626]
    3. 2rgf
      1. chain a [37627]
3. RalGDS-like factor, Rlf [54270]
  1. Mouse (Mus musculus) [TaxId: 10090] [54271] (1)
    1. 1rlf
      1. chain a [37628]
4. Rgl [54272]
  1. Mouse (Mus musculus) [TaxId: 10090] [54273] (1)
    1. 1ef5
      1. chain a [37629]
5. Phoshoinositide 3-kinase (PI3K) [54274]
  includes parts of the flanking linkers
  1. Pig (Sus scrofa) [TaxId: 9823] [54275] (5)
    1. 1e7u
      complexed with kwt; mutant
      1. region a:143-321 [37630]
    2. 1e8x
      complexed with atp, lu; mutant
      1. region a:142-321 [37631]
    3. 1e7v
      complexed with ly2; mutant
      1. region a:143-321 [37632]
    4. 1e90
      complexed with myc; mutant
      1. region a:143-321 [37633]
    5. 1e8w
      complexed with que; mutant
      1. region a:143-321 [37634]
  2. Human (Homo sapiens) [TaxId: 9606] [54276] (3)
    1. 1e8y
      mutant
      1. region a:143-322 [37635]
    2. 1e8z
      complexed with stu; mutant
      1. region a:144-322 [37636]
    3. 1he8
      complexed with gnp, mg; mutant
      1. region a:144-321 [37637]
6. Protein kinase byr2 [69662]
  1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [69663] (2)
    1. 1k8r
      complex with Ras
      complexed with gnp, mg
      1. chain b [72180]
    2. 1i35
      1. chain a [66017]
7. Regulator of G-protein signaling 14, RGS14 [117821]
  1. Mouse (Mus musculus) [TaxId: 10090] [117822] (1)
    SQ P97492 366-456
    1. 1wfy
      Structural genomics target
      1. chain a [114597]
8. Growth factor receptor-bound protein 7, GRB-7 [117823]
  1. Human (Homo sapiens) [TaxId: 9606] [117824] (1)
    SQ Q14451 100-186
    1. 1wgr
      Structural genomics target
      1. chain a [114621]
9. Rap guanine nucleotide exchange factor 5, RapGEF5 [117825]
  1. Human (Homo sapiens) [TaxId: 9606] [117826] (1)
    SQ Q92565 241-331
    1. 1wgy
      Structural genomics target
      1. chain a [114627]
10. Ras association domain-containing protein 8 [142962]
  1. Human (Homo sapiens) [TaxId: 9606] [142963] (1)
    SQ Q8NHQ8 1-83
    1. 2cs4
      1. region a:8-91 [130746]
11. Afadin [142964]
  1. Mouse (Mus musculus) [TaxId: 10090] [142965] (1)
    SQ Q9QZQ1 246-348
    The FHA domain structure is also known (PDB 1wln)
    1. 1wxa
      1. region a:8-110 [121395]
12. Phospholipase C-epsilon-1 [142966]
  contains several Ras-binding domains; some are 'hidden' in the sequence
  1. Human (Homo sapiens) [TaxId: 9606] [142967] (4)
    SQ Q9P212 2006-2114! SQ Q9P212 2131-2246! SQ Q9P212 2134-2239
    1. 2c5l
      complexed with gol, gtp, mg; mutant
      1. region c:2134-2239 [129924]
    2. 2c5l
      automatically matched to 2C5L C:2134-2239
      complexed with gol, gtp, mg; mutant
      1. region d:2134-2238 [129925]
    3. 2bye
      1. region a:2-110 [129478]
    4. 2byf
      mutant
      1. region a:1-116 [129479]
13. A-Raf proto-oncogene serine/threonine-protein kinase [142968]
  1. Human (Homo sapiens) [TaxId: 9606] [142969] (1)
    SQ P10398 19-91
    1. 1wxm
      1. region a:8-80 [121402]
BM-002-like [75362] (3)
Pfam 03671; UPF0185; this family comprises small uncharacterized proteins including human protein BM-002
1. Hypothetical protein zk652.3 [75363]
  1. Caenorhabditis elegans [TaxId: 6239] [75364] (1)
    1. 1l7y
      structural genomics
      1. chain a [73676]
2. Hypothetical protein 1810045k17 [102788]
  1. Mouse (Mus musculus) [TaxId: 10090] [102789] (1)
    1. 1j0g
      structural genomics
      1. chain a [90740]
3. Ubiquitin-fold modifier 1 [142970]
  1. Human (Homo sapiens) [TaxId: 9606] [142971] (1)
    SQ P61960 1-83
    1. 1wxs
      1. region a:1-83 [121408]
APG12-like [142972] (1)
Pfam 04110
1. Autophagy-related protein 12b (APG12b) [142973]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [142974] (2)
    SQ Q9LVK3 10-93
    1. 1wz3
      segment-swapped dimer
      1. region a:10-93 [121478]
    2. 1wz3
      automatically matched to 1WZ3 A:10-93
      1. region b:10-93 [121479]
DIX domain [159926] (1)
Pfam 00778
1. Axin 1 [159927]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [159928] (9)
    SQ O70239 745-827
    1. 1wsp
      complexed with bez, hg
      1. region a:750-832 [145834]
    2. 1wsp
      automatically matched to 1WSP A:750-832
      complexed with bez, hg
      1. region b:750-832 [145835]
    3. 1wsp
      automatically matched to 1WSP A:750-832
      complexed with bez, hg
      1. region c:750-832 [145836]
    4. 2d5g
      complexed with hg; mutant
      1. region a:750-832 [146460]
    5. 2d5g
      automatically matched to 2D5G A:750-832
      complexed with hg; mutant
      1. region b:750-832 [146461]
    6. 2d5g
      automatically matched to 2D5G A:750-832
      complexed with hg; mutant
      1. region c:750-832 [146462]
    7. 2d5g
      automatically matched to 2D5G A:750-832
      complexed with hg; mutant
      1. region d:750-832 [146463]
    8. 2d5g
      automatically matched to 2D5G A:750-832
      complexed with hg; mutant
      1. region e:753-832 [146464]
    9. 2d5g
      automatically matched to 2D5G A:750-832
      complexed with hg; mutant
      1. region f:750-832 [146465]