Structural Classification of Proteins

Fold: SAM domain-like

: 4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: SAM domain-like [47768]
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

Superfamilies:

SAM/Pointed domain [47769] (3)
uperfamily
1. Pointed domain [47770] (7)
  1. Ets-1 transcription factor pointed domain [47771]
    1. Mouse (Mus musculus) [TaxId: 10090] [47772] (1)
      1. 1bqv
        CASP3
        
        chain a [17932]
  2. Etv6 transcription factor pointed domain (Tel SAM) [74735]
    1. Human (Homo sapiens) [TaxId: 9606] [74736] (2)
      1. 1ji7
        complexed with mse, so4
        
        chain a [71682]
        chain b [71683]
        chain c [71684]
      2. 1lky
        complexed with so4; mutant
        
        chain a [73985]
        chain c [73987]
        chain e [73989]
        chain b [73986]
        chain d [73988]
        chain f [73990]
    2. Escherichia coli [TaxId: 562] [158525] (2)
      1. 2qb0
        automatically matched to d1ji7c_
        complexed with mn
        
        region a:15-91 [150324]
      2. 2qb0
        automatically matched to d1ji7c_
        complexed with mn
        
        region c:15-91 [150325]
  3. Ets DNA-binding protein pokkuri (Yan) [109863]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [109864] (2)
      SQ Q01842 42-118
      1. 1sv0
        mutant
        
        chain a [106035]
        chain b [106036]
      2. 1sv4
        mutant
        
        chain a [106041]
        chain b [106042]
  4. Modulator of the activity of Ets (MAE, CG15085-PA) [109865]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [109866] (1)
      SQ Q9I7G2 94-173
      1. 1sv0
        mutant
        
        chain c [106037]
        chain d [106038]
  5. GABP-alpha subunit [109867]
    1. Mouse (Mus musculus) [TaxId: 10090] [109868] (1)
      SQ Q00422 168-254 # structure of the Ets domain (320-429) is also known (scop_sp 46868)
      1. 1sxd
        
        chain a [106079]
  6. Transcriptional regulator ERG [109869]
    1. Human (Homo sapiens) [TaxId: 9606] [109870] (1)
      SQ P11308 115-208
      1. 1sxe
        
        chain a [106080]
2. SAM (sterile alpha motif) domain [47773] (16)
  1. EphA4 receptor tyrosine kinases [47774]
    1. Mouse (Mus musculus) [TaxId: 10090] [47775] (1)
      1. 1b0x
        
        chain a [17933]
  2. EphB2 receptor [47776]
    1. Human (Homo sapiens) [TaxId: 9606] [47777] (2)
      1. 1b4f
        
        chain a [17934]
        chain b [17935]
        chain c [17936]
        chain d [17937]
        chain e [17938]
        chain f [17939]
        chain g [17940]
        chain h [17941]
      2. 1f0m
        
        chain a [17942]
    2. Chicken (Gallus gallus) [TaxId: 9031] [47778] (1)
      1. 1sgg
        
        chain a [17943]
  3. C-terminal domain of p73 [47779]
    1. Human (Homo sapiens) [TaxId: 9606] [47780] (2)
      1. 1dxs
        
        chain a [17944]
      2. 1cok
        
        chain a [17945]
  4. Polyhomeotic [74737]
    1. Drosophila melanogaster [TaxId: 7227] [74738] (3)
      1. 1kw4
        complexed with mse; mutant
        
        chain a [73077]
      2. 1pk1
        mutant
        
        region a:12-79 [118711]
      3. 1pk1
        automatically matched to 1PK1 A:12-79
        mutant
        
        region c:13-78 [118713]
  5. RNA-binding protein Smaug [89075]
    1. Drosophila melanogaster [TaxId: 7227] [89076] (1)
      1. 1oxj
        
        region a:594-655 [87517]
  6. Ephrin type-A receptor 8, C-terminal domain [101242]
    1. Human (Homo sapiens) [TaxId: 9606] [101243] (1)
      1. 1ucv
        
        chain a [99191]
  7. Ste50p, N-terminal domain [101244]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101245] (2)
      1. 1z1v
        automatically matched to d1uqva_
        
        region a:33-102 [124365]
      2. 1uqv
        
        chain a [99798]
  8. Serine/threonine-protein kinase ste11 [101246]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101247] (3)
      1. 1ow5
        
        chain a [93630]
      2. 1x9x
        automatically matched to d1ow5a_
        
        region a:8-67 [121829]
      3. 1x9x
        automatically matched to d1ow5a_
        
        region b:91-150 [121830]
  9. Sam-domain protein samsn-1 [101248]
    1. Mouse (Mus musculus) [TaxId: 10090] [101249] (1)
      1. 1v38
        
        chain a [100280]
  10. C-terminal domain of p63 [116934]
    1. Human (Homo sapiens) [TaxId: 9606] [116935] (1)
      SQ Q9H3D4 544-610
      1. 1rg6
        
        chain a [111800]
  11. Sh3 and multiple ankyrin repeat domains 3 (Shank3) [140616]
    1. Rat(Rattus norvegicus) [TaxId: 10116] [140617] (6)
      SQ Q9JLU4 1749-1815
      1. 2f3n
        mutant
        
        region a:2-65 [132885]
      2. 2f3n
        automatically matched to 2F3N A:2-65
        mutant
        
        region b:2-65 [132886]
      3. 2f3n
        automatically matched to 2F3N A:2-65
        mutant
        
        region c:2-63 [132887]
      4. 2f44
        automatically matched to 2F3N A:2-65
        complexed with cl, zn; mutant
        
        region a:2-65 [132911]
      5. 2f44
        automatically matched to 2F3N A:2-65
        complexed with cl, zn; mutant
        
        region b:2-65 [132912]
      6. 2f44
        automatically matched to 2F3N A:2-65
        complexed with cl, zn; mutant
        
        region c:2-63 [132913]
  12. Connector enhancer of kinase suppressor of Ras 1, CNK1 [140618]
    1. Human (Homo sapiens) [TaxId: 9606] [140619] (1)
      SQ Q969H4 1-78
      1. 1wwv
        
        region a:8-85 [121378]
  13. Polycomb protein Scm [140620]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [140621] (5)
      SQ Q9VHA0 795-871
      1. 1pk3
        complexed with bme; mutant
        
        region a:17-79 [118715]
      2. 1pk3
        automatically matched to 1PK3 A:17-79
        complexed with bme; mutant
        
        region b:17-79 [118716]
      3. 1pk3
        automatically matched to 1PK3 A:17-79
        complexed with bme; mutant
        
        region c:17-79 [118717]
      4. 1pk1
        mutant
        
        region b:17-79 [118712]
      5. 1pk1
        automatically matched to 1PK1 B:17-79
        mutant
        
        region d:17-79 [118714]
  14. Sphingomyelin synthase 1, SMS1 [140622]
    Phosphatidylcholine:ceramide cholinephosphotransferase 1
    1. Mouse (Mus musculus) [TaxId: 10090] [140623] (1)
      SQ Q8VCQ6 1-84
      1. 2d8c
        
        region a:7-91 [131328]
  15. Centaurin-delta 1 (Arap2) [140624]
    1. Human(Homo sapiens) [TaxId: 9606] [140625] (1)
      SQ Q8WZ64 1-78
      1. 1x40
        
        region a:8-85 [121675]
3. Variant SAM domain [158526] (2)
  shares a sequence motif with Pfam 07647, but has a distinct packing of helices
  1. Deleted in Liver Cancer 2, DLC2 [158527]
    1. Human (Homo sapiens) [TaxId: 9606] [158528] (2)
      SQ Q9Y3M8 50-120
      1. 2h80
        
        region a:11-81 [147238]
      2. 2jw2
        automatically matched to 2H80 A:11-81
        
        region a:11-81 [148224]
  2. Deleted in liver cancer 1 protein, DLC-1 [158529]
    1. Human (Homo sapiens) [TaxId: 9606] [158530] (2)
      SQ Q96QB1 1-76! SQ Q96QB1 1-78
      1. 2dky
        
        region a:8-85 [146539]
      2. 2gyt
        
        region a:1-76 [147195]
RuvA domain 2-like [47781] (7)
duplication: contains two helix-hairpin-helix (HhH) motifs
uperfamily
1. DNA helicase RuvA subunit, middle domain [47782] (3)
  1. DNA helicase RuvA subunit, middle domain [47783]
    tetramer; binds Holliday junction
    1. Escherichia coli [TaxId: 562] [47784] (5)
      1. 1cuk
        
        region a:65-142 [17946]
      2. 1hjp
        
        region a:65-140 [17947]
      3. 1d8l
        
        region a:65-140 [17948]
        region b:65-140 [17949]
      4. 1c7y
        protein/DNA complex
        
        region a:65-150 [17950]
      5. 1bdx
        protein/DNA complex
        
        region a:65-142 [17951]
        region b:65-142 [17952]
        region c:65-142 [17953]
        region d:65-142 [17954]
    2. Mycobacterium leprae [TaxId: 1769] [47785] (1)
      1. 1bvs
        
        region a:64-134 [17955]
        region b:64-133 [17956]
        region c:64-134 [17957]
        region d:64-133 [17958]
        region e:64-134 [17959]
        region f:64-133 [17960]
        region g:64-134 [17961]
        region h:64-133 [17962]
    3. Thermus thermophilus [TaxId: 274] [81794] (1)
      1. 1ixr
        complexed with anp; mutant
        
        region a:63-135 [76925]
        region b:63-138 [76928]
2. Excinuclease UvrC C-terminal domain [81795] (1)
  1. Excinuclease UvrC C-terminal domain [81796]
    1. Escherichia coli [TaxId: 562] [81797] (1)
      1. 1kft
        
        chain a [77375]
3. NAD+-dependent DNA ligase, domain 3 [47786] (1)
  1. NAD+-dependent DNA ligase, domain 3 [47787]
    duplication: consists of two RuvA-like domains (four HhH motifs); also contains a zinc-finger subdomain
    1. Thermus filiformis [TaxId: 276] [47788] (2)
      1. 1dgs
        complexed with amp, zn
        
        region a:401-581 [17963]
        region b:2401-2581 [17964]
      2. 1v9p
        complexed with amp, zn
        
        region a:404-584 [100544]
        region b:2404-2584 [100547]
4. Topoisomerase V repeat domain [140626] (1)
  1. Topoisomerase V [140627]
    1. Methanopyrus kandleri [TaxId: 2320] [140628] (4)
      SQ Q977W1 294-350! SQ Q977W1 351-409! SQ Q977W1 410-464! SQ Q977W1 465-519
      1. 2csb
        2nd repeat
        complexed with mg
        
        region a:351-409 [130751]
      2. 2csb
        1st repeat
        complexed with mg
        
        region a:294-350 [130752]
      3. 2csb
        3rd repeat
        complexed with mg
        
        region a:410-464 [130753]
      4. 2csb
        4th repeat
        complexed with mg
        
        region a:465-519 [130754]
5. Hef domain-like [140629] (4)
  helicase/nuclease domain; forms homo and heterodimers; probably includes the Excinuclease UvrC C-terminal domain (scop_fa 81795, that contains a single NMR structure of a monomeric truncated domain, 1kft)
  1. DNA excision repair protein ERCC-1 [140630]
    1. Human (Homo sapiens) [TaxId: 9606] [140631] (2)
      SQ P07992 219-296! SQ P07992 220-297
      1. 2a1j
        complexed with hg
        
        region b:219-296 [126001]
      2. 1z00
        
        region a:220-297 [124294]
  2. ATP-dependent RNA helicase PF2015 [140632]
    1. Pyrococcus furiosus [TaxId: 2261] [140633] (2)
      SQ Q8TZH8 694-761
      1. 1x2i
        
        region a:2-69 [121641]
      2. 1x2i
        automatically matched to 1X2I A:2-69
        
        region b:2-69 [121642]
  3. DNA repair endonuclease XPF [140634]
    1. Aeropyrum pernix [TaxId: 56636] [140635] (6)
      SQ Q9YC15 160-229
      1. 2bgw
        complexed with mg, so4
        
        region a:160-229 [128500]
      2. 2bgw
        automatically matched to 2BGW A:160-229
        complexed with mg, so4
        
        region b:160-228 [128502]
      3. 2bhn
        automatically matched to 2BGW A:160-229
        
        region a:160-229 [128534]
      4. 2bhn
        automatically matched to 2BGW A:160-229
        
        region b:162-229 [128536]
      5. 2bhn
        automatically matched to 2BGW A:160-229
        
        region c:164-229 [128538]
      6. 2bhn
        automatically matched to 2BGW A:160-229
        
        region d:160-229 [128540]
    2. Human (Homo sapiens) [TaxId: 9606] [140636] (4)
      SQ Q92889 823-905! SQ Q92889 837-898
      1. 2a1j
        complexed with hg
        
        region a:837-898 [126000]
      2. 2aq0
        automatically matched to 1Z00 B:823-905
        
        region a:2-84 [127136]
      3. 2aq0
        automatically matched to 1Z00 B:823-905
        
        region b:102-184 [127137]
      4. 1z00
        
        region b:823-905 [124295]
6. Tex HhH-containing domain-like [158531] (1)
  tandem repeat of two Ruva_2-like domains
  1. Transcriptional accessory factor Tex [158532]
    1. Pseudomonas aeruginosa [TaxId: 287] [158533] (6)
      SQ Q9HTY8 474-563! SQ Q9HTY8 564-636
      1. 3bzk
        automatically matched to 3BZC A:474-563
        
        region a:474-563 [155777]
      2. 3bzk
        automatically matched to 3BZC A:564-636
        
        region a:564-636 [155778]
      3. 3bzc
        
        region a:474-563 [155752]
      4. 3bzc
        
        region a:564-636 [155753]
      5. 2oce
        
        region a:474-563 [148727]
      6. 2oce
        
        region a:564-636 [148728]
7. ComEA-like [158534] (2)
  sequence similarity to the HhH-motif domains of the PsbU-like and Tex-like families
  1. Uncharacterized protein TTHA1967 [158535]
    1. Thermus thermophilus [TaxId: 274] [158536] (1)
      SQ Q5SGW3 11-75
      1. 2duy
        complexed with cl
        
        region a:11-75 [146589]
  2. KIF22, C-terminal domain [158537]
    1. Human (Homo sapiens) [TaxId: 9606] [158538] (1)
      SQ Q14807 570-660
      1. 2edu
        
        region a:8-98 [146805]
C-terminal domain of RNA polymerase alpha subunit [47789] (1)
contains one classic and one pseudo HhH motifs
uperfamily
1. C-terminal domain of RNA polymerase alpha subunit [47790] (3)
  1. C-terminal domain of RNA polymerase alpha subunit [47791]
    1. Escherichia coli [TaxId: 562] [47792] (2)
      1. 1lb2
        complexed with cmp
        
        chain b [77871]
        chain e [77872]
      2. 1coo
        
        chain a [17967]
    2. Thermus thermophilus [TaxId: 274] [47793] (1)
      1. 1doq
        
        chain a [17968]
    3. Bacillus subtilis [TaxId: 1423] [140637] (1)
      SQ P20429 245-311
      1. 1z3e
        complexed with so4
        
        region b:245-311 [124401]
Rad51 N-terminal domain-like [47794] (3)
contains one classic and one pseudo HhH motifs
uperfamily
1. DNA repair protein Rad51, N-terminal domain [47795] (4)
  1. DNA repair protein Rad51, N-terminal domain [47796]
    1. Human (Homo sapiens) [TaxId: 9606] [47797] (1)
      1. 1b22
        
        chain a [17969]
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [101250] (1)
      1. 1pzn
        disordered in the other chains of this PDB entry
        complexed with gol, imd, mpd, so4
        
        region a:35-95 [95456]
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [109871] (1)
      SQ P25454 81-395
      1. 1szp
        complexed with so4
        
        region a:81-144 [106176]
        region b:89-144 [106178]
        region c:89-144 [106180]
        region d:81-144 [106182]
        region e:81-144 [106184]
        region f:81-144 [106186]
    4. Archaeon Methanococcus voltae [TaxId: 2188] [109872] (7)
      SQ O73948
      1. 2i1q
        automatically matched to d1t4ga1
        complexed with anp, ca, mg, na; mutant
        
        region a:5-64 [136984]
      2. 1t4g
        complexed with anp, mg; mutant
        
        region a:5-64 [106418]
      3. 2f1j
        automatically matched to d1t4ga1
        complexed with adp, mg; mutant
        
        region a:5-64 [132770]
      4. 2b21
        automatically matched to d1t4ga1
        complexed with anp, k, mg; mutant
        
        region a:5-64 [127687]
      5. 1xu4
        complexed with anp, k, mg; mutant
        
        region a:5-64 [116045]
      6. 2f1i
        automatically matched to d1t4ga1
        complexed with anp, mg; mutant
        
        region a:5-64 [132768]
      7. 2f1h
        automatically matched to d1t4ga1
        complexed with anp, k, mg; mutant
        
        region a:5-64 [132766]
2. NusA extra C-terminal domains [109873] (1)
  1. Transcription elongation protein NusA [109874]
    1. Escherichia coli [TaxId: 562] [109875] (2)
      SQ P03003 352-419
      1. 1u9l
        complexed with au
        
        chain a [107751]
        chain b [107752]
      2. 1wcl
        automatically matched to d1u9lb_
        
        region a:352-421 [120893]
3. Hypothetical protein AF1548, C-terminal domain [116936] (1)
  1. Hypothetical protein AF1548, C-terminal domain [116937]
    1. Archaeoglobus fulgidus [TaxId: 2234] [116938] (1)
      SQ 28724
      1. 1y88
        Structural genomics target
        complexed with cl, so4
        
        region a:128-186 [116560]
Barrier-to-autointegration factor, BAF [47798] (1)
contains one classic and one pseudo HhH motifs
uperfamily
1. Barrier-to-autointegration factor, BAF [47799] (1)
  1. Barrier-to-autointegration factor, BAF [47800]
    1. Human (Homo sapiens) [TaxId: 9606] [47801] (8)
      1. 1ci4
        
        chain a [17970]
        chain b [17971]
      2. 2ezz
        
        chain a [17974]
        chain b [17975]
      3. 2bzf
        automatically matched to d1ci4a_
        
        region a:2-89 [129558]
      4. 2ezy
        
        chain a [17972]
        chain b [17973]
      5. 1qck
        
        chain a [17976]
        chain b [17977]
      6. 2ezx
        
        chain a [17978]
        chain b [17979]
      7. 2odg
        automatically matched to d1ci4a_
        
        region a:1-89 [139027]
      8. 2odg
        automatically matched to d1ci4a_
        
        region b:1-89 [139028]
DNA polymerase beta, N-terminal domain-like [47802] (1)
contains one classic and one pseudo HhH motifs
uperfamily
1. DNA polymerase beta, N-terminal domain-like [47803] (4)
  1. DNA polymerase beta, N-terminal (8 kD)-domain [47804]
    topologically similar to the second domain
    1. Human (Homo sapiens) [TaxId: 9606] [47805] (107)
      SQ P06746
      1. 2fmp
        automatically matched to d1bpxa1
        complexed with dct, doc, mg, na
        
        region a:10-91 [133786]
      2. 1tv9
        complexed with mg, na, po4
        
        region a:5-91 [112675]
      3. 2fms
        automatically matched to d1bpxa1
        complexed with cl, dup, mg, na
        
        region a:10-91 [133792]
      4. 2i9g
        automatically matched to d1bpxa1
        complexed with bpi, cl, doc, na
        
        region a:10-91 [137126]
      5. 2iso
        automatically matched to d1bpxa1
        complexed with cl, doc, gff, mg, na
        
        region a:10-91 [137606]
      6. 2fmq
        automatically matched to d1bpxa1
        complexed with dup, mg, na
        
        region a:10-91 [133789]
      7. 2pxi
        automatically matched to d1bpxa1
        complexed with cl, doc, gfh, mg, na
        
        region a:10-91 [149911]
      8. 2isp
        automatically matched to d1bpxa1
        complexed with cl, doc, ggh, mg, na
        
        region a:10-91 [137609]
      9. 1zjm
        automatically matched to d1bpxa1
        complexed with na
        
        region a:10-91 [125153]
      10. 3c2m
        automatically matched to d1bpxa1
        complexed with edo, f2a, mn, na
        
        region a:10-91 [155882]
      11. 3c2k
        automatically matched to d1bpxa1
        complexed with cl, dup, mn, na
        
        region a:10-91 [155876]
      12. 1tva
        complexed with mg, na, po4
        
        region a:5-91 [112678]
      13. 2p66
        automatically matched to d1bpxa1
        complexed with 3dr, na, po4
        
        region a:10-91 [139506]
      14. 1zjn
        automatically matched to d1bpxa1
        complexed with dgt, mg, na
        
        region a:10-91 [125156]
      15. 1mq3
        complexed with 8og, dcp, doc, mg, na
        
        region a:10-91 [79397]
      16. 3c2l
        automatically matched to d1bpxa1
        complexed with f2a, mn, na
        
        region a:10-91 [155879]
      17. 1mq2
        complexed with 2da, 8og, a, na
        
        region a:10-91 [79394]
      18. 1bpy
        protein/DNA complex; complexed with dct, doc, mg, na
        
        region a:10-91 [17980]
      19. 9icw
        protein/DNA complex; complexed with na, so4
        
        region a:9-91 [17982]
      20. 9ick
        protein/DNA complex; complexed with na
        
        region a:9-91 [17984]
      21. 9icx
        protein/DNA complex; complexed with na
        
        region a:9-91 [17985]
      22. 9icl
        protein/DNA complex; complexed with mn, na
        
        region a:9-91 [17994]
      23. 7ici
        protein/DNA complex; complexed with na
        
        region a:9-91 [17986]
      24. 9icm
        protein/DNA complex; complexed with na
        
        region a:9-91 [18001]
      25. 7ick
        protein/DNA complex; complexed with na
        
        region a:9-91 [17993]
      26. 7icq
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18002]
      27. 1zqp
        protein/DNA complex; complexed with k
        
        region a:9-91 [17991]
      28. 7ice
        protein/DNA complex; complexed with na
        
        region a:9-91 [17987]
      29. 8ico
        protein/DNA complex; complexed with azt, mn, na
        
        region a:9-91 [17983]
      30. 9ico
        protein/DNA complex; complexed with na
        
        region a:9-91 [17995]
      31. 1zqi
        protein/DNA complex; complexed with k
        
        region a:9-91 [17990]
      32. 8ick
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:9-91 [17989]
      33. 7icn
        protein/DNA complex; complexed with na
        
        region a:9-91 [17988]
      34. 9icv
        protein/DNA complex; complexed with dtp, na, zn
        
        region a:9-91 [17996]
      35. 8icc
        protein/DNA complex; complexed with na
        
        region a:9-91 [17997]
      36. 8ici
        protein/DNA complex; complexed with mg, na
        
        region a:9-91 [17998]
      37. 7ich
        protein/DNA complex; complexed with na
        
        region a:9-91 [18000]
      38. 7ict
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18003]
      39. 7icm
        protein/DNA complex; complexed with na
        
        region a:9-91 [18009]
      40. 9icn
        protein/DNA complex; complexed with dct, mg, na
        
        region a:9-91 [18004]
      41. 7icg
        protein/DNA complex; complexed with na
        
        region a:9-91 [18017]
      42. 8ics
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:9-91 [18008]
      43. 9icu
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:9-91 [18014]
      44. 8icn
        protein/DNA complex; complexed with atp, mn, na
        
        region a:9-91 [17999]
      45. 9ics
        protein/DNA complex; complexed with dct, mn, na
        
        region a:9-91 [18012]
      46. 9icq
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:9-91 [18010]
      47. 8icp
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:9-91 [18006]
      48. 9icr
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:9-91 [18011]
      49. 9ict
        protein/DNA complex; complexed with dgt, mn, na
        
        region a:9-91 [18013]
      50. 8icq
        protein/DNA complex; complexed with na
        
        region a:9-91 [18015]
      51. 7icr
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18016]
      52. 7icp
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18005]
      53. 9icg
        protein/DNA complex; complexed with dcp, na, zn
        
        region a:9-91 [18028]
      54. 9ich
        protein/DNA complex; complexed with dgt, na, zn
        
        region a:9-91 [18029]
      55. 9icj
        protein/DNA complex; complexed with na, so4
        
        region a:9-91 [18030]
      56. 8icr
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:9-91 [18007]
      57. 1zqk
        protein/DNA complex; complexed with k
        
        region a:9-91 [18019]
      58. 8icm
        protein/DNA complex; complexed with na, so4
        
        region a:9-91 [18023]
      59. 1zqa
        protein/DNA complex; complexed with k
        
        region a:9-91 [17981]
      60. 8icx
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:9-91 [18024]
      61. 8ica
        protein/DNA complex; complexed with ca, dtp, na
        
        region a:9-91 [18021]
      62. 8icz
        protein/DNA complex; complexed with na, so4
        
        region a:9-91 [18025]
      63. 7ics
        protein/DNA complex; complexed with na
        
        region a:9-91 [18036]
      64. 1zqf
        protein/DNA complex; complexed with cs
        
        region a:9-91 [18035]
      65. 9icf
        protein/DNA complex; complexed with dtp, na, zn
        
        region a:9-91 [18027]
      66. 9ica
        protein/DNA complex; complexed with mn, stp
        
        region a:9-91 [18026]
      67. 1zqb
        protein/DNA complex; complexed with ba
        
        region a:9-91 [18018]
      68. 8icb
        protein/DNA complex; complexed with na
        
        region a:9-91 [18022]
      69. 7icf
        protein/DNA complex; complexed with cd, na
        
        region a:9-91 [18031]
      70. 7icl
        protein/DNA complex; complexed with na
        
        region a:9-91 [18020]
      71. 9icc
        protein/DNA complex; complexed with cr, dtp, na
        
        region a:9-91 [18042]
      72. 9icb
        protein/DNA complex; complexed with co, dtp, na
        
        region a:9-91 [18041]
      73. 8icg
        protein/DNA complex; complexed with na
        
        region a:9-91 [18038]
      74. 8icf
        protein/DNA complex; complexed with dtp, na
        
        region a:9-91 [18037]
      75. 1zqg
        protein/DNA complex; complexed with na
        
        region a:9-91 [18032]
      76. 1zqm
        protein/DNA complex; complexed with mn
        
        region a:9-91 [18033]
      77. 8icl
        protein/DNA complex; complexed with dtp, na, ni
        
        region a:9-91 [18039]
      78. 1zqo
        protein/DNA complex; complexed with na
        
        region a:9-91 [18043]
      79. 8icu
        protein/DNA complex; complexed with dad, mn, na
        
        region a:9-91 [18040]
      80. 9icy
        protein/DNA complex; complexed with na, so4
        
        region a:9-91 [18050]
      81. 1zqn
        protein/DNA complex; complexed with ba
        
        region a:9-91 [18034]
      82. 8icv
        protein/DNA complex; complexed with dgt, mn, na
        
        region a:9-91 [18047]
      83. 8icy
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:9-91 [18048]
      84. 8ict
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:9-91 [18046]
      85. 1zqs
        protein/DNA complex; complexed with na
        
        region a:9-91 [18055]
      86. 9icp
        protein/DNA complex; complexed with na
        
        region a:9-91 [18059]
      87. 1zqc
        protein/DNA complex; complexed with ca
        
        region a:9-91 [18051]
      88. 1bpx
        protein/DNA complex; complexed with na
        
        region a:5-91 [18060]
      89. 7ico
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18044]
      90. 9ici
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18049]
      91. 1bpz
        protein/DNA complex; complexed with na
        
        region a:5-91 [18058]
      92. 7icu
        protein/DNA complex; complexed with cd, na
        
        region a:9-91 [18056]
      93. 1zql
        protein/DNA complex; complexed with mn
        
        region a:9-91 [18053]
      94. 8icj
        protein/DNA complex; complexed with na, ttp
        
        region a:9-91 [18045]
      95. 8ich
        protein/DNA complex; complexed with na
        
        region a:9-91 [18062]
      96. 8ice
        protein/DNA complex; complexed with cd, dtp, na
        
        region a:9-91 [18057]
      97. 7icv
        protein/DNA complex; complexed with na
        
        region a:9-91 [17992]
      98. 1zqq
        protein/DNA complex; complexed with mn, na
        
        region a:9-91 [18054]
      99. 1zqd
        protein/DNA complex; complexed with ca
        
        region a:9-91 [18052]
      100. 8icw
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:9-91 [18061]
      101. 7icj
        protein/DNA complex; complexed with cu, na
        
        region a:9-91 [18063]
      102. 1zqt
        protein/DNA complex; complexed with na, zn
        
        region a:9-91 [18064]
      103. 1zqe
        protein/DNA complex; complexed with cr
        
        region a:9-91 [18065]
      104. 1zqr
        protein/DNA complex; complexed with na, ni
        
        region a:9-91 [18066]
      105. 9ice
        protein/DNA complex; complexed with na
        
        region a:9-91 [18067]
      106. 1zqj
        protein/DNA complex; complexed with ca
        
        region a:9-91 [18068]
      107. 1zqh
        protein/DNA complex; complexed with na
        
        region a:9-91 [18069]
    2. Rat (Rattus norvegicus) [TaxId: 10116] [47806] (10)
      1. 1huz
        complexed with cr, mdn
        
        region a:10-91 [61281]
        region b:10-91 [61283]
      2. 1huo
        complexed with cr, tte
        
        region a:10-91 [61273]
        region b:10-91 [61275]
      3. 2bpf
        protein/DNA complex; complexed with dct, mg
        
        region a:9-91 [18070]
      4. 2bpg
        protein/DNA complex; complexed with dct, mg
        
        region a:9-91 [18074]
        region b:9-91 [18075]
      5. 1bpd
        complexed with po4
        
        region a:9-91 [18073]
      6. 1dk2
        
        chain a [18078]
      7. 1dk3
        
        chain a [18077]
      8. 1bnp
        
        chain a [18080]
      9. 1bno
        
        chain a [18079]
      10. 1bpe
        partly disordered
        complexed with dtp
        
        region a:12-91 [18076]
  2. Terminal deoxynucleotidyl transferase [69042]
    1. Mouse (Mus musculus) [TaxId: 10090] [69043] (3)
      1. 1jms
        complexed with mg, na
        
        region a:148-242 [66889]
      2. 1kdh
        complexed with bro, mg, na
        
        region a:148-242 [72349]
      3. 1kej
        complexed with co, dad, na
        
        region a:148-242 [72371]
  3. DNA polymerase lambda [101251]
    1. Human (Homo sapiens) [TaxId: 9606] [101252] (25)
      1. 2bcq
        automatically matched to d1nzpa_
        complexed with edo, mg, na, ppv
        
        region a:252-327 [128304]
      2. 2bcr
        automatically matched to d1nzpa_
        complexed with edo, mg, na, ppv
        
        region a:251-327 [128307]
      3. 2pfn
        automatically matched to d1nzpa_
        complexed with dup, mg, na; mutant
        
        region a:252-327 [139672]
      4. 1xsn
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region a:252-327 [122282]
      5. 2bcv
        automatically matched to d1nzpa_
        complexed with mg, na, o2c, ttp
        
        region a:253-327 [128316]
      6. 2pfo
        automatically matched to d1nzpa_
        complexed with dup, edo, mg, mn, na; mutant
        
        region a:253-327 [139675]
      7. 2pfp
        automatically matched to d1nzpa_
        complexed with dcp, mg, na; mutant
        
        region a:252-327 [139678]
      8. 1xsp
        automatically matched to d1nzpa_
        complexed with na, ppv; mutant
        
        region a:252-327 [122285]
      9. 3c5g
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region a:249-327 [155943]
      10. 3c5g
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region b:249-327 [155946]
      11. 2bcs
        automatically matched to d1nzpa_
        complexed with mg, na, ppv
        
        region a:252-327 [128310]
      12. 1rzt
        complexed with edo, na; mutant
        
        region a:249-328 [98224]
        region e:250-328 [98227]
        region i:250-328 [98230]
        region m:249-328 [98233]
      13. 1xsl
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        
        region a:249-327 [122270]
      14. 1xsl
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        
        region e:251-327 [122273]
      15. 1xsl
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        
        region i:250-327 [122276]
      16. 1xsl
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        
        region m:249-327 [122279]
      17. 2bcu
        automatically matched to d1nzpa_
        complexed with na, ppv
        
        region a:250-327 [128313]
      18. 3c5f
        automatically matched to d1nzpa_
        complexed with na; mutant
        
        region a:250-327 [155937]
      19. 3c5f
        automatically matched to d1nzpa_
        complexed with na; mutant
        
        region b:250-327 [155940]
      20. 2gws
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        
        region a:249-327 [135813]
      21. 2gws
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        
        region e:250-327 [135816]
      22. 2gws
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        
        region i:250-327 [135819]
      23. 2gws
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        
        region m:250-327 [135822]
      24. 2pfq
        automatically matched to d1nzpa_
        complexed with dcp, mg, mn, na, ppv; mutant
        
        region a:252-327 [139681]
      25. 1nzp
        one (lyase) domain only
        
        chain a [92385]
PsbU/PolX domain-like [81585] (2)
contains one classic and one pseudo HhH motifs
uperfamily
1. DNA polymerase beta-like, second domain [81584] (4)
  topological similarity to the N-terminal domain
  1. DNA polymerase beta [81579]
    1. Human (Homo sapiens) [TaxId: 9606] [81575] (107)
      1. 2fmp
        automatically matched to d1bpxa3
        complexed with dct, doc, mg, na
        
        region a:92-148 [133787]
      2. 1tv9
        complexed with mg, na, po4
        
        region a:92-148 [112676]
      3. 2fms
        automatically matched to d1bpxa3
        complexed with cl, dup, mg, na
        
        region a:92-148 [133793]
      4. 2i9g
        automatically matched to d1bpxa3
        complexed with bpi, cl, doc, na
        
        region a:92-148 [137127]
      5. 2iso
        automatically matched to d1bpxa3
        complexed with cl, doc, gff, mg, na
        
        region a:92-148 [137607]
      6. 2fmq
        automatically matched to d1bpxa3
        complexed with dup, mg, na
        
        region a:92-148 [133790]
      7. 2pxi
        automatically matched to d1bpxa3
        complexed with cl, doc, gfh, mg, na
        
        region a:92-148 [149912]
      8. 2isp
        automatically matched to d1bpxa3
        complexed with cl, doc, ggh, mg, na
        
        region a:92-148 [137610]
      9. 1zjm
        automatically matched to d1bpxa3
        complexed with na
        
        region a:92-148 [125154]
      10. 3c2m
        automatically matched to d1bpxa3
        complexed with edo, f2a, mn, na
        
        region a:92-148 [155883]
      11. 3c2k
        automatically matched to d1bpxa3
        complexed with cl, dup, mn, na
        
        region a:92-148 [155877]
      12. 1tva
        complexed with mg, na, po4
        
        region a:92-148 [112679]
      13. 2p66
        automatically matched to d1bpxa3
        complexed with 3dr, na, po4
        
        region a:92-148 [139507]
      14. 1zjn
        automatically matched to d1bpxa3
        complexed with dgt, mg, na
        
        region a:92-148 [125157]
      15. 1mq3
        complexed with 8og, dcp, doc, mg, na
        
        region a:92-148 [79398]
      16. 3c2l
        automatically matched to d1bpxa3
        complexed with f2a, mn, na
        
        region a:92-148 [155880]
      17. 1mq2
        complexed with 2da, 8og, a, na
        
        region a:92-148 [79395]
      18. 1bpy
        protein/DNA complex; complexed with dct, doc, mg, na
        
        region a:92-148 [75819]
      19. 9icw
        protein/DNA complex; complexed with na, so4
        
        region a:92-148 [76129]
      20. 9ick
        protein/DNA complex; complexed with na
        
        region a:92-148 [76105]
      21. 9icx
        protein/DNA complex; complexed with na
        
        region a:92-148 [76131]
      22. 9icl
        protein/DNA complex; complexed with mn, na
        
        region a:92-148 [76107]
      23. 7ici
        protein/DNA complex; complexed with na
        
        region a:92-148 [76008]
      24. 9icm
        protein/DNA complex; complexed with na
        
        region a:92-148 [76109]
      25. 7ick
        protein/DNA complex; complexed with na
        
        region a:92-148 [76012]
      26. 7icq
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76024]
      27. 1zqp
        protein/DNA complex; complexed with k
        
        region a:92-148 [75965]
      28. 7ice
        protein/DNA complex; complexed with na
        
        region a:92-148 [76000]
      29. 8ico
        protein/DNA complex; complexed with azt, mn, na
        
        region a:92-148 [76062]
      30. 9ico
        protein/DNA complex; complexed with na
        
        region a:92-148 [76113]
      31. 1zqi
        protein/DNA complex; complexed with k
        
        region a:92-148 [75951]
      32. 8ick
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:92-148 [76054]
      33. 7icn
        protein/DNA complex; complexed with na
        
        region a:92-148 [76018]
      34. 9icv
        protein/DNA complex; complexed with dtp, na, zn
        
        region a:92-148 [76127]
      35. 8icc
        protein/DNA complex; complexed with na
        
        region a:92-148 [76040]
      36. 8ici
        protein/DNA complex; complexed with mg, na
        
        region a:92-148 [76050]
      37. 7ich
        protein/DNA complex; complexed with na
        
        region a:92-148 [76006]
      38. 7ict
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76030]
      39. 7icm
        protein/DNA complex; complexed with na
        
        region a:92-148 [76016]
      40. 9icn
        protein/DNA complex; complexed with dct, mg, na
        
        region a:92-148 [76111]
      41. 7icg
        protein/DNA complex; complexed with na
        
        region a:92-148 [76004]
      42. 8ics
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:92-148 [76070]
      43. 9icu
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:92-148 [76125]
      44. 8icn
        protein/DNA complex; complexed with atp, mn, na
        
        region a:92-148 [76060]
      45. 9ics
        protein/DNA complex; complexed with dct, mn, na
        
        region a:92-148 [76121]
      46. 9icq
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:92-148 [76117]
      47. 8icp
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:92-148 [76064]
      48. 9icr
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:92-148 [76119]
      49. 9ict
        protein/DNA complex; complexed with dgt, mn, na
        
        region a:92-148 [76123]
      50. 8icq
        protein/DNA complex; complexed with na
        
        region a:92-148 [76066]
      51. 7icr
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76026]
      52. 7icp
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76022]
      53. 9icg
        protein/DNA complex; complexed with dcp, na, zn
        
        region a:92-148 [76097]
      54. 9ich
        protein/DNA complex; complexed with dgt, na, zn
        
        region a:92-148 [76099]
      55. 9icj
        protein/DNA complex; complexed with na, so4
        
        region a:92-148 [76103]
      56. 8icr
        protein/DNA complex; complexed with dtp, mn, na
        
        region a:92-148 [76068]
      57. 1zqk
        protein/DNA complex; complexed with k
        
        region a:92-148 [75955]
      58. 8icm
        protein/DNA complex; complexed with na, so4
        
        region a:92-148 [76058]
      59. 1zqa
        protein/DNA complex; complexed with k
        
        region a:92-148 [75935]
      60. 8icx
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:92-148 [76080]
      61. 8ica
        protein/DNA complex; complexed with ca, dtp, na
        
        region a:92-148 [76036]
      62. 8icz
        protein/DNA complex; complexed with na, so4
        
        region a:92-148 [76084]
      63. 7ics
        protein/DNA complex; complexed with na
        
        region a:92-148 [76028]
      64. 1zqf
        protein/DNA complex; complexed with cs
        
        region a:92-148 [75945]
      65. 9icf
        protein/DNA complex; complexed with dtp, na, zn
        
        region a:92-148 [76095]
      66. 9ica
        protein/DNA complex; complexed with mn, stp
        
        region a:92-148 [76087]
      67. 1zqb
        protein/DNA complex; complexed with ba
        
        region a:92-148 [75937]
      68. 8icb
        protein/DNA complex; complexed with na
        
        region a:92-148 [76038]
      69. 7icf
        protein/DNA complex; complexed with cd, na
        
        region a:92-148 [76002]
      70. 7icl
        protein/DNA complex; complexed with na
        
        region a:92-148 [76014]
      71. 9icc
        protein/DNA complex; complexed with cr, dtp, na
        
        region a:92-148 [76091]
      72. 9icb
        protein/DNA complex; complexed with co, dtp, na
        
        region a:92-148 [76089]
      73. 8icg
        protein/DNA complex; complexed with na
        
        region a:92-148 [76046]
      74. 8icf
        protein/DNA complex; complexed with dtp, na
        
        region a:92-148 [76044]
      75. 1zqg
        protein/DNA complex; complexed with na
        
        region a:92-148 [75947]
      76. 1zqm
        protein/DNA complex; complexed with mn
        
        region a:92-148 [75959]
      77. 8icl
        protein/DNA complex; complexed with dtp, na, ni
        
        region a:92-148 [76056]
      78. 1zqo
        protein/DNA complex; complexed with na
        
        region a:92-148 [75963]
      79. 8icu
        protein/DNA complex; complexed with dad, mn, na
        
        region a:92-148 [76074]
      80. 9icy
        protein/DNA complex; complexed with na, so4
        
        region a:92-148 [76133]
      81. 1zqn
        protein/DNA complex; complexed with ba
        
        region a:92-148 [75961]
      82. 8icv
        protein/DNA complex; complexed with dgt, mn, na
        
        region a:92-148 [76076]
      83. 8icy
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:92-148 [76082]
      84. 8ict
        protein/DNA complex; complexed with dcp, mn, na
        
        region a:92-148 [76072]
      85. 1zqs
        protein/DNA complex; complexed with na
        
        region a:92-148 [75971]
      86. 9icp
        protein/DNA complex; complexed with na
        
        region a:92-148 [76115]
      87. 1zqc
        protein/DNA complex; complexed with ca
        
        region a:92-148 [75939]
      88. 1bpx
        protein/DNA complex; complexed with na
        
        region a:92-148 [75817]
      89. 7ico
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76020]
      90. 9ici
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [76101]
      91. 1bpz
        protein/DNA complex; complexed with na
        
        region a:92-148 [75821]
      92. 7icu
        protein/DNA complex; complexed with cd, na
        
        region a:92-148 [76032]
      93. 1zql
        protein/DNA complex; complexed with mn
        
        region a:92-148 [75957]
      94. 8icj
        protein/DNA complex; complexed with na, ttp
        
        region a:92-148 [76052]
      95. 8ich
        protein/DNA complex; complexed with na
        
        region a:92-148 [76048]
      96. 8ice
        protein/DNA complex; complexed with cd, dtp, na
        
        region a:92-148 [76042]
      97. 7icv
        protein/DNA complex; complexed with na
        
        region a:92-148 [76034]
      98. 1zqq
        protein/DNA complex; complexed with mn, na
        
        region a:92-148 [75967]
      99. 1zqd
        protein/DNA complex; complexed with ca
        
        region a:92-148 [75941]
      100. 8icw
        protein/DNA complex; complexed with mn, na, ttp
        
        region a:92-148 [76078]
      101. 7icj
        protein/DNA complex; complexed with cu, na
        
        region a:92-148 [76010]
      102. 1zqt
        protein/DNA complex; complexed with na, zn
        
        region a:92-148 [75973]
      103. 1zqe
        protein/DNA complex; complexed with cr
        
        region a:92-148 [75943]
      104. 1zqr
        protein/DNA complex; complexed with na, ni
        
        region a:92-148 [75969]
      105. 9ice
        protein/DNA complex; complexed with na
        
        region a:92-148 [76093]
      106. 1zqj
        protein/DNA complex; complexed with ca
        
        region a:92-148 [75953]
      107. 1zqh
        protein/DNA complex; complexed with na
        
        region a:92-148 [75949]
    2. Rat (Rattus norvegicus) [TaxId: 10116] [81577] (18)
      1. 2van
        automatically matched to d1bpba1
        mutant
        
        region a:91-148 [152826]
      2. 1jn3
        mutant
        
        region a:91-148 [75864]
      3. 1rpl
        
        region a:95-148 [75933]
      4. 1zqw
        
        region a:91-148 [75979]
      5. 1zqy
        
        region a:91-148 [75983]
      6. 1huz
        complexed with cr, mdn
        
        region a:92-148 [75850]
        region b:92-148 [75852]
      7. 1bpb
        
        region a:91-148 [75811]
      8. 1huo
        complexed with cr, tte
        
        region a:92-148 [75846]
        region b:92-148 [75848]
      9. 1zqu
        
        region a:91-148 [75975]
      10. 1zqx
        
        region a:91-148 [75981]
      11. 2bpc
        complexed with mn
        
        region a:91-148 [75989]
      12. 1zqz
        complexed with mn
        
        region a:91-148 [75985]
      13. 1nom
        complexed with mn
        
        region a:91-148 [75929]
      14. 1zqv
        complexed with ca
        
        region a:91-148 [75977]
      15. 2bpf
        protein/DNA complex; complexed with dct, mg
        
        region a:92-148 [75991]
      16. 2bpg
        protein/DNA complex; complexed with dct, mg
        
        region a:92-148 [75993]
        region b:92-148 [75995]
      17. 1bpd
        complexed with po4
        
        region a:92-148 [75813]
      18. 1bpe
        complexed with dtp
        
        region a:92-148 [75815]
  2. Terminal deoxynucleotidyl transferase [81583]
    1. Mouse (Mus musculus) [TaxId: 10090] [81582] (3)
      1. 1jms
        complexed with mg, na
        
        region a:243-302 [75862]
      2. 1kdh
        complexed with bro, mg, na
        
        region a:243-302 [75882]
      3. 1kej
        complexed with co, dad, na
        
        region a:243-302 [75884]
  3. DNA polymerase lambda [101253]
    1. Human (Homo sapiens) [TaxId: 9606] [101254] (24)
      1. 2bcq
        automatically matched to d1rzta2
        complexed with edo, mg, na, ppv
        
        region a:329-385 [128305]
      2. 2bcr
        automatically matched to d1rzta2
        complexed with edo, mg, na, ppv
        
        region a:329-385 [128308]
      3. 2pfn
        automatically matched to d1rzta2
        complexed with dup, mg, na; mutant
        
        region a:329-385 [139673]
      4. 1xsn
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region a:329-385 [122283]
      5. 2bcv
        automatically matched to d1rzta2
        complexed with mg, na, o2c, ttp
        
        region a:329-385 [128317]
      6. 2pfo
        automatically matched to d1rzta2
        complexed with dup, edo, mg, mn, na; mutant
        
        region a:329-385 [139676]
      7. 2pfp
        automatically matched to d1rzta2
        complexed with dcp, mg, na; mutant
        
        region a:329-385 [139679]
      8. 1xsp
        automatically matched to d1rzta2
        complexed with na, ppv; mutant
        
        region a:329-385 [122286]
      9. 3c5g
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region a:329-385 [155944]
      10. 3c5g
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        
        region b:329-385 [155947]
      11. 2bcs
        automatically matched to d1rzta2
        complexed with mg, na, ppv
        
        region a:329-385 [128311]
      12. 1rzt
        complexed with edo, na; mutant
        
        region a:329-385 [98225]
        region e:329-385 [98228]
        region i:329-385 [98231]
        region m:329-385 [98234]
      13. 1xsl
        automatically matched to d1rzta2
        complexed with cac, mg, na
        
        region a:329-385 [122271]
      14. 1xsl
        automatically matched to d1rzta2
        complexed with cac, mg, na
        
        region e:329-385 [122274]
      15. 1xsl
        automatically matched to d1rzta2
        complexed with cac, mg, na
        
        region i:329-385 [122277]
      16. 1xsl
        automatically matched to d1rzta2
        complexed with cac, mg, na
        
        region m:329-385 [122280]
      17. 2bcu
        automatically matched to d1rzta2
        complexed with na, ppv
        
        region a:329-385 [128314]
      18. 3c5f
        automatically matched to d1rzta2
        complexed with na; mutant
        
        region a:329-385 [155938]
      19. 3c5f
        automatically matched to d1rzta2
        complexed with na; mutant
        
        region b:329-385 [155941]
      20. 2gws
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        
        region a:329-385 [135814]
      21. 2gws
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        
        region e:329-385 [135817]
      22. 2gws
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        
        region i:329-385 [135820]
      23. 2gws
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        
        region m:329-385 [135823]
      24. 2pfq
        automatically matched to d1rzta2
        complexed with dcp, mg, mn, na, ppv; mutant
        
        region a:329-385 [139682]
2. PsbU-like [158539] (1)
  Pfam 06514
  1. Photosystem II 12 kDa extrinsic protein PsbU [158540]
    1. Thermosynechococcus elongatus [TaxId: 146786] [158541] (1)
      SQ Q9F1L5 37-134
      1. 2axt
        complexed with bcr, bct, ca, cla, dgd, fe2, hem, lhg, lmt, mge, oec, pho, pq9, sqd
        
        region u:37-134 [144940]
5' to 3' exonuclease, C-terminal subdomain [47807] (1)
uperfamily
1. 5' to 3' exonuclease, C-terminal subdomain [47808] (8)
  1. T4 RNase H [47809]
    1. Bacteriophage T4 [TaxId: 10665] [47810] (2)
      1. 1tfr
        complexed with mg
        
        region a:183-305 [18081]
      2. 2ihn
        automatically matched to d1tfra1
        mutant
        
        region a:183-305 [147679]
  2. 5' to 3' exonuclease domain of DNA polymerase Taq [47811]
    1. Thermus aquaticus [TaxId: 271] [47812] (4)
      1. 1cmw
        
        region a:174-289 [18084]
      2. 1bgx
        
        region t:174-289 [18083]
      3. 1taq
        complexed with bgl, zn; mutant
        
        region a:174-289 [18082]
      4. 1tau
        protein/DNA complex; complexed with bgl, zn
        
        region a:174-289 [18085]
  3. T5 5'-exonuclease [47813]
    1. Bacteriophage T5 [TaxId: 10726] [47814] (4)
      1. 1xo1
        mutant
        
        region a:186-290 [18086]
        region b:186-290 [18087]
      2. 1exn
        mutant
        
        region a:186-290 [18088]
        region b:186-291 [18089]
      3. 1ut8
        complexed with zn
        
        region a:186-291 [99908]
        region b:186-291 [99910]
      4. 1ut5
        complexed with mn
        
        region a:186-291 [99902]
        region b:186-291 [99904]
  4. Flap endonuclease-1 (Fen-1 nuclease) [47815]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [47816] (2)
      1. 1a77
        complexed with mg
        
        region a:209-316 [18090]
      2. 1a76
        complexed with mn
        
        region a:209-316 [18091]
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [81798] (1)
      1. 1mc8
        mutant
        
        region a:221-332 [78945]
        region b:221-332 [78947]
    3. Archaeon Pyrococcus furiosus [TaxId: 2261] [47818] (1)
      1. 1b43
        
        region a:220-339 [18092]
        region b:220-339 [18093]
    4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [101255] (2)
      1. 1rxw
        
        region a:220-324 [98059]
      2. 1rxv
        
        region a:220-323 [98055]
        region b:220-323 [98057]
    5. Human (Homo sapiens) [TaxId: 9606] [140638] (3)
      SQ P39748 218-357
      1. 1ul1
        complexed with mg
        
        region x:218-357 [119690]
      2. 1ul1
        automatically matched to 1UL1 X:218-357
        complexed with mg
        
        region y:218-357 [119692]
      3. 1ul1
        automatically matched to 1UL1 X:218-357
        complexed with mg
        
        region z:218-356 [119694]
HRDC-like [47819] (4)
uperfamily
1. HRDC domain from helicases [47820] (3)
  1. HRDC domain from RecQ helicase [47821]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47822] (1)
      1. 1d8b
        
        chain a [18094]
    2. Escherichia coli [TaxId: 562] [140639] (3)
      SQ P15043 530-606
      1. 1wud
        
        region a:530-606 [121283]
      2. 1wud
        automatically matched to 1WUD A:530-606
        
        region b:531-606 [121284]
      3. 1wud
        automatically matched to 1WUD A:530-606
        
        region d:531-606 [121285]
  2. Werner syndrome ATP-dependent helicase, WRN [140640]
    1. Human (Homo sapiens) [TaxId: 9606] [140641] (3)
      SQ Q14191 1140-1239! SQ Q14191 1142-1235
      1. 2e1f
        automatically matched to 2E1E A:1142-1235
        complexed with cl
        
        region a:1142-1235 [131964]
      2. 2e1e
        complexed with cl
        
        region a:1142-1235 [131963]
      3. 2dgz
        
        region a:1140-1239 [131516]
2. RNA polymerase II subunit RBP4 (RpoF) [69044] (3)
  1. RNA polymerase II subunit RBP4 (RpoF) [69045]
    includes the N-terminal heterodimerisation alpha-hairpin
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [69046] (1)
      1. 1go3
        
        chain f [65407]
        chain n [65409]
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [116939] (1)
      SQ P20433 46-221
      1. 1y14
        
        chain a [116322]
        chain c [116325]
    3. Human (Homo sapiens) [TaxId: 9606] [140642] (4)
      SQ O15514 14-142
      1. 2c35
        
        region a:14-142 [129711]
      2. 2c35
        automatically matched to 2C35 A:14-142
        
        region c:14-142 [129714]
      3. 2c35
        automatically matched to 2C35 A:14-142
        
        region e:14-139 [129717]
      4. 2c35
        automatically matched to 2C35 A:14-142
        
        region g:14-139 [129720]
3. RNase D C-terminal domains [140643] (1)
  tandem repeat of two domains of this fold, the first domain belongs to Pfam 00570
  1. Ribonuclease D [140644]
    1. Escherichia coli [TaxId: 562] [140645] (2)
      SQ P09155 194-294! SQ P09155 295-375
      1. 1yt3
        complexed with so4, zn
        
        region a:194-294 [123992]
      2. 1yt3
        complexed with so4, zn
        
        region a:295-375 [123993]
4. EXOSC10 HRDC domain-like [140646] (2)
  1. Exosome complex exonuclease RRP6 domain [140647]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [140648] (4)
      SQ Q12149 421-516
      1. 2hbk
        automatically matched to 2HBJ A:421-516
        complexed with mn; mutant
        
        region a:421-516 [136313]
      2. 2hbj
        mutant
        
        region a:421-516 [136311]
      3. 2hbl
        automatically matched to 2HBJ A:421-516
        complexed with amp, mn, zn; mutant
        
        region a:421-516 [136315]
      4. 2hbm
        automatically matched to 2HBJ A:421-516
        complexed with mn, u, zn; mutant
        
        region a:421-516 [136317]
  2. Exosome component 10, EXOSC10 [140649]
    1. Human (Homo sapiens) [TaxId: 9606] [140650] (1)
      SQ Q01780 483-595
      1. 2cpr
        
        region a:483-595 [130705]
lambda integrase-like, N-terminal domain [47823] (1)
uperfamily
1. lambda integrase-like, N-terminal domain [47824] (3)
  1. Cre recombinase [47825]
    1. Bacteriophage P1 [TaxId: 10678] [47826] (24)
      SQ P06956 20-341
      1. 1f44
        mutant
        
        region a:20-129 [64982]
      2. 1xo0
        mutant
        
        region a:20-129 [115674]
        region b:20-129 [115676]
      3. 2hof
        automatically matched to d1nzba1
        mutant
        
        region a:20-129 [147313]
      4. 2hof
        automatically matched to d1nzba1
        mutant
        
        region b:20-129 [147315]
      5. 2hoi
        automatically matched to d1nzba1
        mutant
        
        region a:20-129 [147317]
      6. 2hoi
        automatically matched to d1nzba1
        mutant
        
        region b:20-129 [147319]
      7. 2hoi
        automatically matched to d1nzba1
        mutant
        
        region g:20-129 [147321]
      8. 2hoi
        automatically matched to d1nzba1
        mutant
        
        region h:20-129 [147323]
      9. 4crx
        mutant
        
        region a:20-129 [18095]
        region b:20-129 [18096]
      10. 1crx
        protein/DNA complex
        
        region a:20-129 [18097]
        region b:20-129 [18098]
      11. 1kbu
        
        region a:18-129 [72284]
        region b:19-129 [72286]
      12. 1drg
        mutant
        
        region a:21-129 [64792]
      13. 2crx
        protein/DNA complex
        
        region a:19-129 [18099]
        region b:19-129 [18100]
      14. 3crx
        protein/DNA complex; mutant
        
        region a:19-129 [18101]
        region b:19-129 [18102]
      15. 1pvp
        mutant
        
        region a:19-129 [95177]
        region b:19-129 [95179]
      16. 1ma7
        mutant
        
        region a:19-129 [84921]
        region b:20-129 [84923]
      17. 1q3u
        complexed with iod, mg, ump
        
        region a:10-129 [95752]
        region b:20-129 [95754]
        region e:21-129 [95756]
        region f:20-129 [95758]
      18. 1xns
        
        region a:20-129 [115647]
        region b:20-129 [115649]
      19. 1pvr
        mutant
        
        region a:18-129 [95185]
        region b:19-129 [95187]
      20. 1nzb
        complexed with iod, mg, ump
        
        region a:10-129 [92365]
        region b:20-129 [92367]
        region e:21-129 [92369]
        region f:20-129 [92371]
      21. 1q3v
        complexed with a3p, iod, mg, ump
        
        region a:10-129 [95760]
        region b:20-129 [95762]
        region e:21-129 [95764]
        region f:20-129 [95766]
      22. 5crx
        mutant
        
        region a:19-129 [18103]
        region b:19-129 [18104]
      23. 1pvq
        mutant
        
        region a:19-129 [95181]
        region b:19-129 [95183]
      24. 1ouq
        complexed with a3p, iod, mg, ump
        
        region a:10-129 [93557]
        region b:20-129 [93559]
        region e:21-129 [93561]
        region f:20-129 [93563]
  2. Recombinase XerD [47827]
    1. Escherichia coli [TaxId: 562] [47828] (1)
      1. 1a0p
        
        region a:3-100 [18105]
  3. Flp recombinase [47829]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [47830] (3)
      1. 1p4e
        complexed with 2po, ptr; mutant
        
        region a:2-129 [87764]
        region b:2-129 [87766]
        region c:2-129 [87768]
        region d:2-130 [87770]
      2. 1flo
        protein/DNA complex; complexed with phs
        
        region a:2-129 [18106]
        region b:2-129 [18107]
        region c:2-129 [18108]
        region d:2-129 [18109]
      3. 1m6x
        complexed with ptr; mutant
        
        region a:2-129 [78708]
        region b:2-129 [78710]
        region c:2-129 [78712]
        region d:2-129 [78714]
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain [47831] (1)
uperfamily
1. Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain [47832] (1)
  1. Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain [47833]
    inserted in the phosphohistidine domain
    1. Escherichia coli [TaxId: 562] [47834] (11)
      1. 1zym
        
        region a:22-144 [18110]
        region b:22-144 [18111]
      2. 3ezb
        
        region a:22-144 [18120]
      3. 1ezd
        
        region a:22-144 [18119]
      4. 1ezb
        
        region a:22-144 [18117]
      5. 1ezc
        
        region a:22-144 [18118]
      6. 3eza
        
        region a:22-144 [18112]
      7. 3eze
        complexed with po3
        
        region a:22-144 [18121]
      8. 2ezc
        
        region a:22-144 [18115]
      9. 1eza
        
        region a:22-144 [18113]
      10. 2ezb
        
        region a:22-144 [18114]
      11. 2eza
        
        region a:22-144 [18116]
Hypothetical protein YjbJ [69047] (1)
uperfamily
1. Hypothetical protein YjbJ [69048] (1)
  1. Hypothetical protein YjbJ [69049]
    1. Escherichia coli [TaxId: 562] [69050] (1)
      1. 1ryk
        structural genomics
        
        chain a [98105]
Putative methyltransferase TM0872, insert domain [81799] (1)
uperfamily
1. Putative methyltransferase TM0872, insert domain [81800] (2)
  1. Putative methyltransferase TM0872, insert domain [81801]
    1. Thermotoga maritima [TaxId: 2336] [81802] (2)
      1. 1m6y
        CASP5
        complexed with mse, sah, so4
        
        region a:115-215 [78716]
        region b:115-215 [78718]
      2. 1n2x
        complexed with mse, sam, so4
        
        region a:115-215 [79860]
        region b:115-215 [79862]
    2. Thermus thermophilus [TaxId: 274] [116940] (1)
      SQ Q5SJD8
      1. 1wg8
        Structural genomics target
        complexed with sam
        
        region a:109-206 [114605]
        region b:109-206 [114607]
eIF2alpha middle domain-like [116742] (1)
uperfamily
1. eIF2alpha middle domain-like [116743] (3)
  1. Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 [116744]
    1. Human (Homo sapiens) [TaxId: 9606] [116745] (2)
      SQ P05198
      1. 1kl9
        complexed with mse, zn
        
        region a:89-182 [111574]
      2. 1q8k
        
        region a:89-185 [111596]
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [116746] (1)
      1. 1q46
        
        region a:89-175 [111594]
    3. Sulfolobus solfataricus [TaxId: 2287] [140651] (1)
      SQ Q97Z79 85-175
      1. 2aho
        complexed with gnp, mg, zn
        
        region b:85-175 [126770]
YozE-like [140652] (1)
uperfamily
1. YozE-like [140653] (2)
  Pfam 06855; DUF1250
  1. Hypothetical protein YozE [140654]
    1. Bacillus subtilis [TaxId: 1423] [140655] (1)
      SQ O31864 1-74
      1. 2fj6
        
        region a:1-74 [133547]
  2. Uncharacterized protein MW1311 [158542]
    1. Staphylococcus aureus [TaxId: 1280] [158543] (2)
      SQ Q7BEF3 4-73
      1. 2o6k
        
        region a:4-73 [148632]
      2. 2o6k
        automatically matched to 2O6K A:4-73
        
        region b:4-73 [148633]
GspK insert domain-like [158544] (1)
tandem repeat of two SAM-like domains iserted into pilin fold; domain 1 contains one classic HhH motif
1. GspK insert domain-like [158545] (1)
  middle part of Pfam 03934
  1. Pseudopilin GspK [158546]
    1. Escherichia coli [TaxId: 562] [158547] (2)
      SQ A7ZRI8 103-212! SQ A7ZRI8 213-283
      1. 3ci0
        complexed with ca, cl
        
        region k:204-274 [156659]
      2. 3ci0
        complexed with ca, cl
        
        region k:94-203 [156660]