Structural Classification of Proteins

Superfamily: DNA polymerase beta, N-terminal domain-like

: contains one classic and one pseudo HhH motifs
uperfamily

Lineage:

Root: scop
Class: All alpha proteins [46456]
Fold: SAM domain-like [47768]
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily: DNA polymerase beta, N-terminal domain-like [47802]
contains one classic and one pseudo HhH motifs
uperfamily

Families:

DNA polymerase beta, N-terminal domain-like [47803] (4)
1. DNA polymerase beta, N-terminal (8 kD)-domain [47804]
  topologically similar to the second domain
  1. Human (Homo sapiens) [TaxId: 9606] [47805] (107)
    SQ P06746
    1. 2fmp
      automatically matched to d1bpxa1
      complexed with dct, doc, mg, na
      1. region a:10-91 [133786]
    2. 1tv9
      complexed with mg, na, po4
      1. region a:5-91 [112675]
    3. 2fms
      automatically matched to d1bpxa1
      complexed with cl, dup, mg, na
      1. region a:10-91 [133792]
    4. 2i9g
      automatically matched to d1bpxa1
      complexed with bpi, cl, doc, na
      1. region a:10-91 [137126]
    5. 2iso
      automatically matched to d1bpxa1
      complexed with cl, doc, gff, mg, na
      1. region a:10-91 [137606]
    6. 2fmq
      automatically matched to d1bpxa1
      complexed with dup, mg, na
      1. region a:10-91 [133789]
    7. 2pxi
      automatically matched to d1bpxa1
      complexed with cl, doc, gfh, mg, na
      1. region a:10-91 [149911]
    8. 2isp
      automatically matched to d1bpxa1
      complexed with cl, doc, ggh, mg, na
      1. region a:10-91 [137609]
    9. 1zjm
      automatically matched to d1bpxa1
      complexed with na
      1. region a:10-91 [125153]
    10. 3c2m
      automatically matched to d1bpxa1
      complexed with edo, f2a, mn, na
      1. region a:10-91 [155882]
    11. 3c2k
      automatically matched to d1bpxa1
      complexed with cl, dup, mn, na
      1. region a:10-91 [155876]
    12. 1tva
      complexed with mg, na, po4
      1. region a:5-91 [112678]
    13. 2p66
      automatically matched to d1bpxa1
      complexed with 3dr, na, po4
      1. region a:10-91 [139506]
    14. 1zjn
      automatically matched to d1bpxa1
      complexed with dgt, mg, na
      1. region a:10-91 [125156]
    15. 1mq3
      complexed with 8og, dcp, doc, mg, na
      1. region a:10-91 [79397]
    16. 3c2l
      automatically matched to d1bpxa1
      complexed with f2a, mn, na
      1. region a:10-91 [155879]
    17. 1mq2
      complexed with 2da, 8og, a, na
      1. region a:10-91 [79394]
    18. 1bpy
      protein/DNA complex; complexed with dct, doc, mg, na
      1. region a:10-91 [17980]
    19. 9icw
      protein/DNA complex; complexed with na, so4
      1. region a:9-91 [17982]
    20. 9ick
      protein/DNA complex; complexed with na
      1. region a:9-91 [17984]
    21. 9icx
      protein/DNA complex; complexed with na
      1. region a:9-91 [17985]
    22. 9icl
      protein/DNA complex; complexed with mn, na
      1. region a:9-91 [17994]
    23. 7ici
      protein/DNA complex; complexed with na
      1. region a:9-91 [17986]
    24. 9icm
      protein/DNA complex; complexed with na
      1. region a:9-91 [18001]
    25. 7ick
      protein/DNA complex; complexed with na
      1. region a:9-91 [17993]
    26. 7icq
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18002]
    27. 1zqp
      protein/DNA complex; complexed with k
      1. region a:9-91 [17991]
    28. 7ice
      protein/DNA complex; complexed with na
      1. region a:9-91 [17987]
    29. 8ico
      protein/DNA complex; complexed with azt, mn, na
      1. region a:9-91 [17983]
    30. 9ico
      protein/DNA complex; complexed with na
      1. region a:9-91 [17995]
    31. 1zqi
      protein/DNA complex; complexed with k
      1. region a:9-91 [17990]
    32. 8ick
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:9-91 [17989]
    33. 7icn
      protein/DNA complex; complexed with na
      1. region a:9-91 [17988]
    34. 9icv
      protein/DNA complex; complexed with dtp, na, zn
      1. region a:9-91 [17996]
    35. 8icc
      protein/DNA complex; complexed with na
      1. region a:9-91 [17997]
    36. 8ici
      protein/DNA complex; complexed with mg, na
      1. region a:9-91 [17998]
    37. 7ich
      protein/DNA complex; complexed with na
      1. region a:9-91 [18000]
    38. 7ict
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18003]
    39. 7icm
      protein/DNA complex; complexed with na
      1. region a:9-91 [18009]
    40. 9icn
      protein/DNA complex; complexed with dct, mg, na
      1. region a:9-91 [18004]
    41. 7icg
      protein/DNA complex; complexed with na
      1. region a:9-91 [18017]
    42. 8ics
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:9-91 [18008]
    43. 9icu
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:9-91 [18014]
    44. 8icn
      protein/DNA complex; complexed with atp, mn, na
      1. region a:9-91 [17999]
    45. 9ics
      protein/DNA complex; complexed with dct, mn, na
      1. region a:9-91 [18012]
    46. 9icq
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:9-91 [18010]
    47. 8icp
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:9-91 [18006]
    48. 9icr
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:9-91 [18011]
    49. 9ict
      protein/DNA complex; complexed with dgt, mn, na
      1. region a:9-91 [18013]
    50. 8icq
      protein/DNA complex; complexed with na
      1. region a:9-91 [18015]
    51. 7icr
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18016]
    52. 7icp
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18005]
    53. 9icg
      protein/DNA complex; complexed with dcp, na, zn
      1. region a:9-91 [18028]
    54. 9ich
      protein/DNA complex; complexed with dgt, na, zn
      1. region a:9-91 [18029]
    55. 9icj
      protein/DNA complex; complexed with na, so4
      1. region a:9-91 [18030]
    56. 8icr
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:9-91 [18007]
    57. 1zqk
      protein/DNA complex; complexed with k
      1. region a:9-91 [18019]
    58. 8icm
      protein/DNA complex; complexed with na, so4
      1. region a:9-91 [18023]
    59. 1zqa
      protein/DNA complex; complexed with k
      1. region a:9-91 [17981]
    60. 8icx
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:9-91 [18024]
    61. 8ica
      protein/DNA complex; complexed with ca, dtp, na
      1. region a:9-91 [18021]
    62. 8icz
      protein/DNA complex; complexed with na, so4
      1. region a:9-91 [18025]
    63. 7ics
      protein/DNA complex; complexed with na
      1. region a:9-91 [18036]
    64. 1zqf
      protein/DNA complex; complexed with cs
      1. region a:9-91 [18035]
    65. 9icf
      protein/DNA complex; complexed with dtp, na, zn
      1. region a:9-91 [18027]
    66. 9ica
      protein/DNA complex; complexed with mn, stp
      1. region a:9-91 [18026]
    67. 1zqb
      protein/DNA complex; complexed with ba
      1. region a:9-91 [18018]
    68. 8icb
      protein/DNA complex; complexed with na
      1. region a:9-91 [18022]
    69. 7icf
      protein/DNA complex; complexed with cd, na
      1. region a:9-91 [18031]
    70. 7icl
      protein/DNA complex; complexed with na
      1. region a:9-91 [18020]
    71. 9icc
      protein/DNA complex; complexed with cr, dtp, na
      1. region a:9-91 [18042]
    72. 9icb
      protein/DNA complex; complexed with co, dtp, na
      1. region a:9-91 [18041]
    73. 8icg
      protein/DNA complex; complexed with na
      1. region a:9-91 [18038]
    74. 8icf
      protein/DNA complex; complexed with dtp, na
      1. region a:9-91 [18037]
    75. 1zqg
      protein/DNA complex; complexed with na
      1. region a:9-91 [18032]
    76. 1zqm
      protein/DNA complex; complexed with mn
      1. region a:9-91 [18033]
    77. 8icl
      protein/DNA complex; complexed with dtp, na, ni
      1. region a:9-91 [18039]
    78. 1zqo
      protein/DNA complex; complexed with na
      1. region a:9-91 [18043]
    79. 8icu
      protein/DNA complex; complexed with dad, mn, na
      1. region a:9-91 [18040]
    80. 9icy
      protein/DNA complex; complexed with na, so4
      1. region a:9-91 [18050]
    81. 1zqn
      protein/DNA complex; complexed with ba
      1. region a:9-91 [18034]
    82. 8icv
      protein/DNA complex; complexed with dgt, mn, na
      1. region a:9-91 [18047]
    83. 8icy
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:9-91 [18048]
    84. 8ict
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:9-91 [18046]
    85. 1zqs
      protein/DNA complex; complexed with na
      1. region a:9-91 [18055]
    86. 9icp
      protein/DNA complex; complexed with na
      1. region a:9-91 [18059]
    87. 1zqc
      protein/DNA complex; complexed with ca
      1. region a:9-91 [18051]
    88. 1bpx
      protein/DNA complex; complexed with na
      1. region a:5-91 [18060]
    89. 7ico
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18044]
    90. 9ici
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18049]
    91. 1bpz
      protein/DNA complex; complexed with na
      1. region a:5-91 [18058]
    92. 7icu
      protein/DNA complex; complexed with cd, na
      1. region a:9-91 [18056]
    93. 1zql
      protein/DNA complex; complexed with mn
      1. region a:9-91 [18053]
    94. 8icj
      protein/DNA complex; complexed with na, ttp
      1. region a:9-91 [18045]
    95. 8ich
      protein/DNA complex; complexed with na
      1. region a:9-91 [18062]
    96. 8ice
      protein/DNA complex; complexed with cd, dtp, na
      1. region a:9-91 [18057]
    97. 7icv
      protein/DNA complex; complexed with na
      1. region a:9-91 [17992]
    98. 1zqq
      protein/DNA complex; complexed with mn, na
      1. region a:9-91 [18054]
    99. 1zqd
      protein/DNA complex; complexed with ca
      1. region a:9-91 [18052]
    100. 8icw
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:9-91 [18061]
    101. 7icj
      protein/DNA complex; complexed with cu, na
      1. region a:9-91 [18063]
    102. 1zqt
      protein/DNA complex; complexed with na, zn
      1. region a:9-91 [18064]
    103. 1zqe
      protein/DNA complex; complexed with cr
      1. region a:9-91 [18065]
    104. 1zqr
      protein/DNA complex; complexed with na, ni
      1. region a:9-91 [18066]
    105. 9ice
      protein/DNA complex; complexed with na
      1. region a:9-91 [18067]
    106. 1zqj
      protein/DNA complex; complexed with ca
      1. region a:9-91 [18068]
    107. 1zqh
      protein/DNA complex; complexed with na
      1. region a:9-91 [18069]
  2. Rat (Rattus norvegicus) [TaxId: 10116] [47806] (10)
    1. 1huz
      complexed with cr, mdn
      1. region a:10-91 [61281]
      2. region b:10-91 [61283]
    2. 1huo
      complexed with cr, tte
      1. region a:10-91 [61273]
      2. region b:10-91 [61275]
    3. 2bpf
      protein/DNA complex; complexed with dct, mg
      1. region a:9-91 [18070]
    4. 2bpg
      protein/DNA complex; complexed with dct, mg
      1. region a:9-91 [18074]
      2. region b:9-91 [18075]
    5. 1bpd
      complexed with po4
      1. region a:9-91 [18073]
    6. 1dk2
      1. chain a [18078]
    7. 1dk3
      1. chain a [18077]
    8. 1bnp
      1. chain a [18080]
    9. 1bno
      1. chain a [18079]
    10. 1bpe
      partly disordered
      complexed with dtp
      1. region a:12-91 [18076]
2. Terminal deoxynucleotidyl transferase [69042]
  1. Mouse (Mus musculus) [TaxId: 10090] [69043] (3)
    1. 1jms
      complexed with mg, na
      1. region a:148-242 [66889]
    2. 1kdh
      complexed with bro, mg, na
      1. region a:148-242 [72349]
    3. 1kej
      complexed with co, dad, na
      1. region a:148-242 [72371]
3. DNA polymerase lambda [101251]
  1. Human (Homo sapiens) [TaxId: 9606] [101252] (25)
    1. 2bcq
      automatically matched to d1nzpa_
      complexed with edo, mg, na, ppv
      1. region a:252-327 [128304]
    2. 2bcr
      automatically matched to d1nzpa_
      complexed with edo, mg, na, ppv
      1. region a:251-327 [128307]
    3. 2pfn
      automatically matched to d1nzpa_
      complexed with dup, mg, na; mutant
      1. region a:252-327 [139672]
    4. 1xsn
      automatically matched to d1nzpa_
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region a:252-327 [122282]
    5. 2bcv
      automatically matched to d1nzpa_
      complexed with mg, na, o2c, ttp
      1. region a:253-327 [128316]
    6. 2pfo
      automatically matched to d1nzpa_
      complexed with dup, edo, mg, mn, na; mutant
      1. region a:253-327 [139675]
    7. 2pfp
      automatically matched to d1nzpa_
      complexed with dcp, mg, na; mutant
      1. region a:252-327 [139678]
    8. 1xsp
      automatically matched to d1nzpa_
      complexed with na, ppv; mutant
      1. region a:252-327 [122285]
    9. 3c5g
      automatically matched to d1nzpa_
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region a:249-327 [155943]
    10. 3c5g
      automatically matched to d1nzpa_
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region b:249-327 [155946]
    11. 2bcs
      automatically matched to d1nzpa_
      complexed with mg, na, ppv
      1. region a:252-327 [128310]
    12. 1rzt
      complexed with edo, na; mutant
      1. region a:249-328 [98224]
      2. region e:250-328 [98227]
      3. region i:250-328 [98230]
      4. region m:249-328 [98233]
    13. 1xsl
      automatically matched to d1nzpa_
      complexed with cac, mg, na
      1. region a:249-327 [122270]
    14. 1xsl
      automatically matched to d1nzpa_
      complexed with cac, mg, na
      1. region e:251-327 [122273]
    15. 1xsl
      automatically matched to d1nzpa_
      complexed with cac, mg, na
      1. region i:250-327 [122276]
    16. 1xsl
      automatically matched to d1nzpa_
      complexed with cac, mg, na
      1. region m:249-327 [122279]
    17. 2bcu
      automatically matched to d1nzpa_
      complexed with na, ppv
      1. region a:250-327 [128313]
    18. 3c5f
      automatically matched to d1nzpa_
      complexed with na; mutant
      1. region a:250-327 [155937]
    19. 3c5f
      automatically matched to d1nzpa_
      complexed with na; mutant
      1. region b:250-327 [155940]
    20. 2gws
      automatically matched to d1nzpa_
      complexed with cac, cl, edo, mg, na
      1. region a:249-327 [135813]
    21. 2gws
      automatically matched to d1nzpa_
      complexed with cac, cl, edo, mg, na
      1. region e:250-327 [135816]
    22. 2gws
      automatically matched to d1nzpa_
      complexed with cac, cl, edo, mg, na
      1. region i:250-327 [135819]
    23. 2gws
      automatically matched to d1nzpa_
      complexed with cac, cl, edo, mg, na
      1. region m:250-327 [135822]
    24. 2pfq
      automatically matched to d1nzpa_
      complexed with dcp, mg, mn, na, ppv; mutant
      1. region a:252-327 [139681]
    25. 1nzp
      one (lyase) domain only
      1. chain a [92385]