Structural Classification of Proteins
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Family: DNA polymerase beta, N-terminal domain-like

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: SAM domain-like [47768]
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily: DNA polymerase beta, N-terminal domain-like [47802]
    contains one classic and one pseudo HhH motifs
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase beta, N-terminal domain-like [47803]

Protein Domains:

  1. DNA polymerase beta, N-terminal (8 kD)-domain [47804]
    topologically similar to the second domain
    1. Human (Homo sapiens) [TaxId: 9606] [47805] (107)
      SQ P06746
      1. 2fmp picpicxrefxref
        automatically matched to d1bpxa1
        complexed with dct, doc, mg, na
        1. region a:10-91 [133786] picpiclink
      2. 1tv9 picpicxrefxref
        complexed with mg, na, po4
        1. region a:5-91 [112675] picpiclink
      3. 2fms picpicxrefxref
        automatically matched to d1bpxa1
        complexed with cl, dup, mg, na
        1. region a:10-91 [133792] picpiclink
      4. 2i9g picpicxrefxref
        automatically matched to d1bpxa1
        complexed with bpi, cl, doc, na
        1. region a:10-91 [137126] picpiclink
      5. 2iso picpicxrefxref
        automatically matched to d1bpxa1
        complexed with cl, doc, gff, mg, na
        1. region a:10-91 [137606] picpiclink
      6. 2fmq picpicxrefxref
        automatically matched to d1bpxa1
        complexed with dup, mg, na
        1. region a:10-91 [133789] picpiclink
      7. 2pxi picpicxrefxref
        automatically matched to d1bpxa1
        complexed with cl, doc, gfh, mg, na
        1. region a:10-91 [149911] picpiclink
      8. 2isp picpicxrefxref
        automatically matched to d1bpxa1
        complexed with cl, doc, ggh, mg, na
        1. region a:10-91 [137609] picpiclink
      9. 1zjm picpicxrefxref
        automatically matched to d1bpxa1
        complexed with na
        1. region a:10-91 [125153] picpiclink
      10. 3c2m picpicxrefxref
        automatically matched to d1bpxa1
        complexed with edo, f2a, mn, na
        1. region a:10-91 [155882] picpiclink
      11. 3c2k picpicxrefxref
        automatically matched to d1bpxa1
        complexed with cl, dup, mn, na
        1. region a:10-91 [155876] picpiclink
      12. 1tva picpicxrefxref
        complexed with mg, na, po4
        1. region a:5-91 [112678] picpiclink
      13. 2p66 picpicxrefxref
        automatically matched to d1bpxa1
        complexed with 3dr, na, po4
        1. region a:10-91 [139506] picpiclink
      14. 1zjn picpicxrefxref
        automatically matched to d1bpxa1
        complexed with dgt, mg, na
        1. region a:10-91 [125156] picpiclink
      15. 1mq3 picpicxrefxref
        complexed with 8og, dcp, doc, mg, na
        1. region a:10-91 [79397] picpiclink
      16. 3c2l picpicxrefxref
        automatically matched to d1bpxa1
        complexed with f2a, mn, na
        1. region a:10-91 [155879] picpiclink
      17. 1mq2 picpicxrefxref
        complexed with 2da, 8og, a, na
        1. region a:10-91 [79394] picpiclink
      18. 1bpy picpicxrefxref
        protein/DNA complex; complexed with dct, doc, mg, na
        1. region a:10-91 [17980] picpiclink
      19. 9icw picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:9-91 [17982] picpiclink
      20. 9ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17984] picpiclink
      21. 9icx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17985] picpiclink
      22. 9icl picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:9-91 [17994] picpiclink
      23. 7ici picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17986] picpiclink
      24. 9icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18001] picpiclink
      25. 7ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17993] picpiclink
      26. 7icq picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18002] picpiclink
      27. 1zqp picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:9-91 [17991] picpiclink
      28. 7ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17987] picpiclink
      29. 8ico picpicxrefxref
        protein/DNA complex; complexed with azt, mn, na
        1. region a:9-91 [17983] picpiclink
      30. 9ico picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17995] picpiclink
      31. 1zqi picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:9-91 [17990] picpiclink
      32. 8ick picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:9-91 [17989] picpiclink
      33. 7icn picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17988] picpiclink
      34. 9icv picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:9-91 [17996] picpiclink
      35. 8icc picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17997] picpiclink
      36. 8ici picpicxrefxref
        protein/DNA complex; complexed with mg, na
        1. region a:9-91 [17998] picpiclink
      37. 7ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18000] picpiclink
      38. 7ict picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18003] picpiclink
      39. 7icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18009] picpiclink
      40. 9icn picpicxrefxref
        protein/DNA complex; complexed with dct, mg, na
        1. region a:9-91 [18004] picpiclink
      41. 7icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18017] picpiclink
      42. 8ics picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:9-91 [18008] picpiclink
      43. 9icu picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:9-91 [18014] picpiclink
      44. 8icn picpicxrefxref
        protein/DNA complex; complexed with atp, mn, na
        1. region a:9-91 [17999] picpiclink
      45. 9ics picpicxrefxref
        protein/DNA complex; complexed with dct, mn, na
        1. region a:9-91 [18012] picpiclink
      46. 9icq picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:9-91 [18010] picpiclink
      47. 8icp picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:9-91 [18006] picpiclink
      48. 9icr picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:9-91 [18011] picpiclink
      49. 9ict picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:9-91 [18013] picpiclink
      50. 8icq picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18015] picpiclink
      51. 7icr picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18016] picpiclink
      52. 7icp picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18005] picpiclink
      53. 9icg picpicxrefxref
        protein/DNA complex; complexed with dcp, na, zn
        1. region a:9-91 [18028] picpiclink
      54. 9ich picpicxrefxref
        protein/DNA complex; complexed with dgt, na, zn
        1. region a:9-91 [18029] picpiclink
      55. 9icj picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:9-91 [18030] picpiclink
      56. 8icr picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:9-91 [18007] picpiclink
      57. 1zqk picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:9-91 [18019] picpiclink
      58. 8icm picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:9-91 [18023] picpiclink
      59. 1zqa picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:9-91 [17981] picpiclink
      60. 8icx picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:9-91 [18024] picpiclink
      61. 8ica picpicxrefxref
        protein/DNA complex; complexed with ca, dtp, na
        1. region a:9-91 [18021] picpiclink
      62. 8icz picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:9-91 [18025] picpiclink
      63. 7ics picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18036] picpiclink
      64. 1zqf picpicxrefxref
        protein/DNA complex; complexed with cs
        1. region a:9-91 [18035] picpiclink
      65. 9icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:9-91 [18027] picpiclink
      66. 9ica picpicxrefxref
        protein/DNA complex; complexed with mn, stp
        1. region a:9-91 [18026] picpiclink
      67. 1zqb picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:9-91 [18018] picpiclink
      68. 8icb picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18022] picpiclink
      69. 7icf picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:9-91 [18031] picpiclink
      70. 7icl picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18020] picpiclink
      71. 9icc picpicxrefxref
        protein/DNA complex; complexed with cr, dtp, na
        1. region a:9-91 [18042] picpiclink
      72. 9icb picpicxrefxref
        protein/DNA complex; complexed with co, dtp, na
        1. region a:9-91 [18041] picpiclink
      73. 8icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18038] picpiclink
      74. 8icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na
        1. region a:9-91 [18037] picpiclink
      75. 1zqg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18032] picpiclink
      76. 1zqm picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:9-91 [18033] picpiclink
      77. 8icl picpicxrefxref
        protein/DNA complex; complexed with dtp, na, ni
        1. region a:9-91 [18039] picpiclink
      78. 1zqo picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18043] picpiclink
      79. 8icu picpicxrefxref
        protein/DNA complex; complexed with dad, mn, na
        1. region a:9-91 [18040] picpiclink
      80. 9icy picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:9-91 [18050] picpiclink
      81. 1zqn picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:9-91 [18034] picpiclink
      82. 8icv picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:9-91 [18047] picpiclink
      83. 8icy picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:9-91 [18048] picpiclink
      84. 8ict picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:9-91 [18046] picpiclink
      85. 1zqs picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18055] picpiclink
      86. 9icp picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18059] picpiclink
      87. 1zqc picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:9-91 [18051] picpiclink
      88. 1bpx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:5-91 [18060] picpiclink
      89. 7ico picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18044] picpiclink
      90. 9ici picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18049] picpiclink
      91. 1bpz picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:5-91 [18058] picpiclink
      92. 7icu picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:9-91 [18056] picpiclink
      93. 1zql picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:9-91 [18053] picpiclink
      94. 8icj picpicxrefxref
        protein/DNA complex; complexed with na, ttp
        1. region a:9-91 [18045] picpiclink
      95. 8ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18062] picpiclink
      96. 8ice picpicxrefxref
        protein/DNA complex; complexed with cd, dtp, na
        1. region a:9-91 [18057] picpiclink
      97. 7icv picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [17992] picpiclink
      98. 1zqq picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:9-91 [18054] picpiclink
      99. 1zqd picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:9-91 [18052] picpiclink
      100. 8icw picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:9-91 [18061] picpiclink
      101. 7icj picpicxrefxref
        protein/DNA complex; complexed with cu, na
        1. region a:9-91 [18063] picpiclink
      102. 1zqt picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:9-91 [18064] picpiclink
      103. 1zqe picpicxrefxref
        protein/DNA complex; complexed with cr
        1. region a:9-91 [18065] picpiclink
      104. 1zqr picpicxrefxref
        protein/DNA complex; complexed with na, ni
        1. region a:9-91 [18066] picpiclink
      105. 9ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18067] picpiclink
      106. 1zqj picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:9-91 [18068] picpiclink
      107. 1zqh picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:9-91 [18069] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [47806] (10)
      1. 1huz picpicxrefxref
        complexed with cr, mdn
        1. region a:10-91 [61281] picpiclink
        2. region b:10-91 [61283] picpiclink
      2. 1huo picpicxrefxref
        complexed with cr, tte
        1. region a:10-91 [61273] picpiclink
        2. region b:10-91 [61275] picpiclink
      3. 2bpf picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:9-91 [18070] picpiclink
      4. 2bpg picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:9-91 [18074] picpiclink
        2. region b:9-91 [18075] picpiclink
      5. 1bpd picpicxrefxref
        complexed with po4
        1. region a:9-91 [18073] picpiclink
      6. 1dk2 picpic
        1. chain a [18078] picpiclink
      7. 1dk3 picpic
        1. chain a [18077] picpiclink
      8. 1bnp picpic
        1. chain a [18080] picpiclink
      9. 1bno picpic
        1. chain a [18079] picpiclink
      10. 1bpe picpicxrefxref
        partly disordered
        complexed with dtp
        1. region a:12-91 [18076] picpiclink
  2. Terminal deoxynucleotidyl transferase [69042]
    1. Mouse (Mus musculus) [TaxId: 10090] [69043] (3)
      1. 1jms picpicxrefxref
        complexed with mg, na
        1. region a:148-242 [66889] picpiclink
      2. 1kdh picpicxrefxref
        complexed with bro, mg, na
        1. region a:148-242 [72349] picpiclink
      3. 1kej picpicxrefxref
        complexed with co, dad, na
        1. region a:148-242 [72371] picpiclink
  3. DNA polymerase lambda [101251]
    1. Human (Homo sapiens) [TaxId: 9606] [101252] (25)
      1. 2bcq picpicxrefxref
        automatically matched to d1nzpa_
        complexed with edo, mg, na, ppv
        1. region a:252-327 [128304] picpiclink
      2. 2bcr picpicxrefxref
        automatically matched to d1nzpa_
        complexed with edo, mg, na, ppv
        1. region a:251-327 [128307] picpiclink
      3. 2pfn picpicxrefxref
        automatically matched to d1nzpa_
        complexed with dup, mg, na; mutant
        1. region a:252-327 [139672] picpiclink
      4. 1xsn picpicxrefxref
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:252-327 [122282] picpiclink
      5. 2bcv picpicxrefxref
        automatically matched to d1nzpa_
        complexed with mg, na, o2c, ttp
        1. region a:253-327 [128316] picpiclink
      6. 2pfo picpicxrefxref
        automatically matched to d1nzpa_
        complexed with dup, edo, mg, mn, na; mutant
        1. region a:253-327 [139675] picpiclink
      7. 2pfp picpicxrefxref
        automatically matched to d1nzpa_
        complexed with dcp, mg, na; mutant
        1. region a:252-327 [139678] picpiclink
      8. 1xsp picpicxrefxref
        automatically matched to d1nzpa_
        complexed with na, ppv; mutant
        1. region a:252-327 [122285] picpiclink
      9. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:249-327 [155943] picpiclink
      10. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region b:249-327 [155946] picpiclink
      11. 2bcs picpicxrefxref
        automatically matched to d1nzpa_
        complexed with mg, na, ppv
        1. region a:252-327 [128310] picpiclink
      12. 1rzt picpicxrefxref
        complexed with edo, na; mutant
        1. region a:249-328 [98224] picpiclink
        2. region e:250-328 [98227] picpiclink
        3. region i:250-328 [98230] picpiclink
        4. region m:249-328 [98233] picpiclink
      13. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        1. region a:249-327 [122270] picpiclink
      14. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        1. region e:251-327 [122273] picpiclink
      15. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        1. region i:250-327 [122276] picpiclink
      16. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, mg, na
        1. region m:249-327 [122279] picpiclink
      17. 2bcu picpicxrefxref
        automatically matched to d1nzpa_
        complexed with na, ppv
        1. region a:250-327 [128313] picpiclink
      18. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with na; mutant
        1. region a:250-327 [155937] picpiclink
      19. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with na; mutant
        1. region b:250-327 [155940] picpiclink
      20. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        1. region a:249-327 [135813] picpiclink
      21. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        1. region e:250-327 [135816] picpiclink
      22. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        1. region i:250-327 [135819] picpiclink
      23. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1nzpa_
        complexed with cac, cl, edo, mg, na
        1. region m:250-327 [135822] picpiclink
      24. 2pfq picpicxrefxref
        automatically matched to d1nzpa_
        complexed with dcp, mg, mn, na, ppv; mutant
        1. region a:252-327 [139681] picpiclink
      25. 1nzp picpic
        one (lyase) domain only
        1. chain a [92385] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk