Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: PsbU/PolX domain-like

contains one classic and one pseudo HhH motifs
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: SAM domain-like [47768]
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily: PsbU/PolX domain-like [81585]
    contains one classic and one pseudo HhH motifs
    link to SUPERFAMILY database - Superfamily

Families:

  1. DNA polymerase beta-like, second domain [81584] (4)
    topological similarity to the N-terminal domain
    1. DNA polymerase beta [81579]
      1. Human (Homo sapiens) [TaxId: 9606] [81575] (107)
        1. 2fmp picpicxrefxref
          automatically matched to d1bpxa3
          complexed with dct, doc, mg, na
          1. region a:92-148 [133787] picpiclink
        2. 1tv9 picpicxrefxref
          complexed with mg, na, po4
          1. region a:92-148 [112676] picpiclink
        3. 2fms picpicxrefxref
          automatically matched to d1bpxa3
          complexed with cl, dup, mg, na
          1. region a:92-148 [133793] picpiclink
        4. 2i9g picpicxrefxref
          automatically matched to d1bpxa3
          complexed with bpi, cl, doc, na
          1. region a:92-148 [137127] picpiclink
        5. 2iso picpicxrefxref
          automatically matched to d1bpxa3
          complexed with cl, doc, gff, mg, na
          1. region a:92-148 [137607] picpiclink
        6. 2fmq picpicxrefxref
          automatically matched to d1bpxa3
          complexed with dup, mg, na
          1. region a:92-148 [133790] picpiclink
        7. 2pxi picpicxrefxref
          automatically matched to d1bpxa3
          complexed with cl, doc, gfh, mg, na
          1. region a:92-148 [149912] picpiclink
        8. 2isp picpicxrefxref
          automatically matched to d1bpxa3
          complexed with cl, doc, ggh, mg, na
          1. region a:92-148 [137610] picpiclink
        9. 1zjm picpicxrefxref
          automatically matched to d1bpxa3
          complexed with na
          1. region a:92-148 [125154] picpiclink
        10. 3c2m picpicxrefxref
          automatically matched to d1bpxa3
          complexed with edo, f2a, mn, na
          1. region a:92-148 [155883] picpiclink
        11. 3c2k picpicxrefxref
          automatically matched to d1bpxa3
          complexed with cl, dup, mn, na
          1. region a:92-148 [155877] picpiclink
        12. 1tva picpicxrefxref
          complexed with mg, na, po4
          1. region a:92-148 [112679] picpiclink
        13. 2p66 picpicxrefxref
          automatically matched to d1bpxa3
          complexed with 3dr, na, po4
          1. region a:92-148 [139507] picpiclink
        14. 1zjn picpicxrefxref
          automatically matched to d1bpxa3
          complexed with dgt, mg, na
          1. region a:92-148 [125157] picpiclink
        15. 1mq3 picpicxrefxref
          complexed with 8og, dcp, doc, mg, na
          1. region a:92-148 [79398] picpiclink
        16. 3c2l picpicxrefxref
          automatically matched to d1bpxa3
          complexed with f2a, mn, na
          1. region a:92-148 [155880] picpiclink
        17. 1mq2 picpicxrefxref
          complexed with 2da, 8og, a, na
          1. region a:92-148 [79395] picpiclink
        18. 1bpy picpicxrefxref
          protein/DNA complex; complexed with dct, doc, mg, na
          1. region a:92-148 [75819] picpiclink
        19. 9icw picpicxrefxref
          protein/DNA complex; complexed with na, so4
          1. region a:92-148 [76129] picpiclink
        20. 9ick picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76105] picpiclink
        21. 9icx picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76131] picpiclink
        22. 9icl picpicxrefxref
          protein/DNA complex; complexed with mn, na
          1. region a:92-148 [76107] picpiclink
        23. 7ici picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76008] picpiclink
        24. 9icm picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76109] picpiclink
        25. 7ick picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76012] picpiclink
        26. 7icq picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76024] picpiclink
        27. 1zqp picpicxrefxref
          protein/DNA complex; complexed with k
          1. region a:92-148 [75965] picpiclink
        28. 7ice picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76000] picpiclink
        29. 8ico picpicxrefxref
          protein/DNA complex; complexed with azt, mn, na
          1. region a:92-148 [76062] picpiclink
        30. 9ico picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76113] picpiclink
        31. 1zqi picpicxrefxref
          protein/DNA complex; complexed with k
          1. region a:92-148 [75951] picpiclink
        32. 8ick picpicxrefxref
          protein/DNA complex; complexed with dtp, mn, na
          1. region a:92-148 [76054] picpiclink
        33. 7icn picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76018] picpiclink
        34. 9icv picpicxrefxref
          protein/DNA complex; complexed with dtp, na, zn
          1. region a:92-148 [76127] picpiclink
        35. 8icc picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76040] picpiclink
        36. 8ici picpicxrefxref
          protein/DNA complex; complexed with mg, na
          1. region a:92-148 [76050] picpiclink
        37. 7ich picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76006] picpiclink
        38. 7ict picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76030] picpiclink
        39. 7icm picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76016] picpiclink
        40. 9icn picpicxrefxref
          protein/DNA complex; complexed with dct, mg, na
          1. region a:92-148 [76111] picpiclink
        41. 7icg picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76004] picpiclink
        42. 8ics picpicxrefxref
          protein/DNA complex; complexed with dcp, mn, na
          1. region a:92-148 [76070] picpiclink
        43. 9icu picpicxrefxref
          protein/DNA complex; complexed with mn, na, ttp
          1. region a:92-148 [76125] picpiclink
        44. 8icn picpicxrefxref
          protein/DNA complex; complexed with atp, mn, na
          1. region a:92-148 [76060] picpiclink
        45. 9ics picpicxrefxref
          protein/DNA complex; complexed with dct, mn, na
          1. region a:92-148 [76121] picpiclink
        46. 9icq picpicxrefxref
          protein/DNA complex; complexed with dtp, mn, na
          1. region a:92-148 [76117] picpiclink
        47. 8icp picpicxrefxref
          protein/DNA complex; complexed with dtp, mn, na
          1. region a:92-148 [76064] picpiclink
        48. 9icr picpicxrefxref
          protein/DNA complex; complexed with dcp, mn, na
          1. region a:92-148 [76119] picpiclink
        49. 9ict picpicxrefxref
          protein/DNA complex; complexed with dgt, mn, na
          1. region a:92-148 [76123] picpiclink
        50. 8icq picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76066] picpiclink
        51. 7icr picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76026] picpiclink
        52. 7icp picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76022] picpiclink
        53. 9icg picpicxrefxref
          protein/DNA complex; complexed with dcp, na, zn
          1. region a:92-148 [76097] picpiclink
        54. 9ich picpicxrefxref
          protein/DNA complex; complexed with dgt, na, zn
          1. region a:92-148 [76099] picpiclink
        55. 9icj picpicxrefxref
          protein/DNA complex; complexed with na, so4
          1. region a:92-148 [76103] picpiclink
        56. 8icr picpicxrefxref
          protein/DNA complex; complexed with dtp, mn, na
          1. region a:92-148 [76068] picpiclink
        57. 1zqk picpicxrefxref
          protein/DNA complex; complexed with k
          1. region a:92-148 [75955] picpiclink
        58. 8icm picpicxrefxref
          protein/DNA complex; complexed with na, so4
          1. region a:92-148 [76058] picpiclink
        59. 1zqa picpicxrefxref
          protein/DNA complex; complexed with k
          1. region a:92-148 [75935] picpiclink
        60. 8icx picpicxrefxref
          protein/DNA complex; complexed with mn, na, ttp
          1. region a:92-148 [76080] picpiclink
        61. 8ica picpicxrefxref
          protein/DNA complex; complexed with ca, dtp, na
          1. region a:92-148 [76036] picpiclink
        62. 8icz picpicxrefxref
          protein/DNA complex; complexed with na, so4
          1. region a:92-148 [76084] picpiclink
        63. 7ics picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76028] picpiclink
        64. 1zqf picpicxrefxref
          protein/DNA complex; complexed with cs
          1. region a:92-148 [75945] picpiclink
        65. 9icf picpicxrefxref
          protein/DNA complex; complexed with dtp, na, zn
          1. region a:92-148 [76095] picpiclink
        66. 9ica picpicxrefxref
          protein/DNA complex; complexed with mn, stp
          1. region a:92-148 [76087] picpiclink
        67. 1zqb picpicxrefxref
          protein/DNA complex; complexed with ba
          1. region a:92-148 [75937] picpiclink
        68. 8icb picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76038] picpiclink
        69. 7icf picpicxrefxref
          protein/DNA complex; complexed with cd, na
          1. region a:92-148 [76002] picpiclink
        70. 7icl picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76014] picpiclink
        71. 9icc picpicxrefxref
          protein/DNA complex; complexed with cr, dtp, na
          1. region a:92-148 [76091] picpiclink
        72. 9icb picpicxrefxref
          protein/DNA complex; complexed with co, dtp, na
          1. region a:92-148 [76089] picpiclink
        73. 8icg picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76046] picpiclink
        74. 8icf picpicxrefxref
          protein/DNA complex; complexed with dtp, na
          1. region a:92-148 [76044] picpiclink
        75. 1zqg picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75947] picpiclink
        76. 1zqm picpicxrefxref
          protein/DNA complex; complexed with mn
          1. region a:92-148 [75959] picpiclink
        77. 8icl picpicxrefxref
          protein/DNA complex; complexed with dtp, na, ni
          1. region a:92-148 [76056] picpiclink
        78. 1zqo picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75963] picpiclink
        79. 8icu picpicxrefxref
          protein/DNA complex; complexed with dad, mn, na
          1. region a:92-148 [76074] picpiclink
        80. 9icy picpicxrefxref
          protein/DNA complex; complexed with na, so4
          1. region a:92-148 [76133] picpiclink
        81. 1zqn picpicxrefxref
          protein/DNA complex; complexed with ba
          1. region a:92-148 [75961] picpiclink
        82. 8icv picpicxrefxref
          protein/DNA complex; complexed with dgt, mn, na
          1. region a:92-148 [76076] picpiclink
        83. 8icy picpicxrefxref
          protein/DNA complex; complexed with mn, na, ttp
          1. region a:92-148 [76082] picpiclink
        84. 8ict picpicxrefxref
          protein/DNA complex; complexed with dcp, mn, na
          1. region a:92-148 [76072] picpiclink
        85. 1zqs picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75971] picpiclink
        86. 9icp picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76115] picpiclink
        87. 1zqc picpicxrefxref
          protein/DNA complex; complexed with ca
          1. region a:92-148 [75939] picpiclink
        88. 1bpx picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75817] picpiclink
        89. 7ico picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76020] picpiclink
        90. 9ici picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [76101] picpiclink
        91. 1bpz picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75821] picpiclink
        92. 7icu picpicxrefxref
          protein/DNA complex; complexed with cd, na
          1. region a:92-148 [76032] picpiclink
        93. 1zql picpicxrefxref
          protein/DNA complex; complexed with mn
          1. region a:92-148 [75957] picpiclink
        94. 8icj picpicxrefxref
          protein/DNA complex; complexed with na, ttp
          1. region a:92-148 [76052] picpiclink
        95. 8ich picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76048] picpiclink
        96. 8ice picpicxrefxref
          protein/DNA complex; complexed with cd, dtp, na
          1. region a:92-148 [76042] picpiclink
        97. 7icv picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76034] picpiclink
        98. 1zqq picpicxrefxref
          protein/DNA complex; complexed with mn, na
          1. region a:92-148 [75967] picpiclink
        99. 1zqd picpicxrefxref
          protein/DNA complex; complexed with ca
          1. region a:92-148 [75941] picpiclink
        100. 8icw picpicxrefxref
          protein/DNA complex; complexed with mn, na, ttp
          1. region a:92-148 [76078] picpiclink
        101. 7icj picpicxrefxref
          protein/DNA complex; complexed with cu, na
          1. region a:92-148 [76010] picpiclink
        102. 1zqt picpicxrefxref
          protein/DNA complex; complexed with na, zn
          1. region a:92-148 [75973] picpiclink
        103. 1zqe picpicxrefxref
          protein/DNA complex; complexed with cr
          1. region a:92-148 [75943] picpiclink
        104. 1zqr picpicxrefxref
          protein/DNA complex; complexed with na, ni
          1. region a:92-148 [75969] picpiclink
        105. 9ice picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [76093] picpiclink
        106. 1zqj picpicxrefxref
          protein/DNA complex; complexed with ca
          1. region a:92-148 [75953] picpiclink
        107. 1zqh picpicxrefxref
          protein/DNA complex; complexed with na
          1. region a:92-148 [75949] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [81577] (18)
        1. 2van picpicxref
          automatically matched to d1bpba1
          mutant
          1. region a:91-148 [152826] picpiclink
        2. 1jn3 picpicxref
          mutant
          1. region a:91-148 [75864] picpiclink
        3. 1rpl picpicxref
          1. region a:95-148 [75933] picpiclink
        4. 1zqw picpicxref
          1. region a:91-148 [75979] picpiclink
        5. 1zqy picpicxref
          1. region a:91-148 [75983] picpiclink
        6. 1huz picpicxrefxref
          complexed with cr, mdn
          1. region a:92-148 [75850] picpiclink
          2. region b:92-148 [75852] picpiclink
        7. 1bpb picpicxref
          1. region a:91-148 [75811] picpiclink
        8. 1huo picpicxrefxref
          complexed with cr, tte
          1. region a:92-148 [75846] picpiclink
          2. region b:92-148 [75848] picpiclink
        9. 1zqu picpicxref
          1. region a:91-148 [75975] picpiclink
        10. 1zqx picpicxref
          1. region a:91-148 [75981] picpiclink
        11. 2bpc picpicxref
          complexed with mn
          1. region a:91-148 [75989] picpiclink
        12. 1zqz picpicxref
          complexed with mn
          1. region a:91-148 [75985] picpiclink
        13. 1nom picpicxref
          complexed with mn
          1. region a:91-148 [75929] picpiclink
        14. 1zqv picpicxref
          complexed with ca
          1. region a:91-148 [75977] picpiclink
        15. 2bpf picpicxrefxref
          protein/DNA complex; complexed with dct, mg
          1. region a:92-148 [75991] picpiclink
        16. 2bpg picpicxrefxref
          protein/DNA complex; complexed with dct, mg
          1. region a:92-148 [75993] picpiclink
          2. region b:92-148 [75995] picpiclink
        17. 1bpd picpicxrefxref
          complexed with po4
          1. region a:92-148 [75813] picpiclink
        18. 1bpe picpicxrefxref
          complexed with dtp
          1. region a:92-148 [75815] picpiclink
    2. Terminal deoxynucleotidyl transferase [81583]
      1. Mouse (Mus musculus) [TaxId: 10090] [81582] (3)
        1. 1jms picpicxrefxref
          complexed with mg, na
          1. region a:243-302 [75862] picpiclink
        2. 1kdh picpicxrefxref
          complexed with bro, mg, na
          1. region a:243-302 [75882] picpiclink
        3. 1kej picpicxrefxref
          complexed with co, dad, na
          1. region a:243-302 [75884] picpiclink
    3. DNA polymerase lambda [101253]
      1. Human (Homo sapiens) [TaxId: 9606] [101254] (24)
        1. 2bcq picpicxrefxref
          automatically matched to d1rzta2
          complexed with edo, mg, na, ppv
          1. region a:329-385 [128305] picpiclink
        2. 2bcr picpicxrefxref
          automatically matched to d1rzta2
          complexed with edo, mg, na, ppv
          1. region a:329-385 [128308] picpiclink
        3. 2pfn picpicxrefxref
          automatically matched to d1rzta2
          complexed with dup, mg, na; mutant
          1. region a:329-385 [139673] picpiclink
        4. 1xsn picpicxrefxref
          automatically matched to d1rzta2
          complexed with 2dt, d3t, edo, mg, na; mutant
          1. region a:329-385 [122283] picpiclink
        5. 2bcv picpicxrefxref
          automatically matched to d1rzta2
          complexed with mg, na, o2c, ttp
          1. region a:329-385 [128317] picpiclink
        6. 2pfo picpicxrefxref
          automatically matched to d1rzta2
          complexed with dup, edo, mg, mn, na; mutant
          1. region a:329-385 [139676] picpiclink
        7. 2pfp picpicxrefxref
          automatically matched to d1rzta2
          complexed with dcp, mg, na; mutant
          1. region a:329-385 [139679] picpiclink
        8. 1xsp picpicxrefxref
          automatically matched to d1rzta2
          complexed with na, ppv; mutant
          1. region a:329-385 [122286] picpiclink
        9. 3c5g picpicxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with 2dt, d3t, edo, mg, na; mutant
          1. region a:329-385 [155944] picpiclink
        10. 3c5g picpicxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with 2dt, d3t, edo, mg, na; mutant
          1. region b:329-385 [155947] picpiclink
        11. 2bcs picpicxrefxref
          automatically matched to d1rzta2
          complexed with mg, na, ppv
          1. region a:329-385 [128311] picpiclink
        12. 1rzt picpicxrefxref
          complexed with edo, na; mutant
          1. region a:329-385 [98225] picpiclink
          2. region e:329-385 [98228] picpiclink
          3. region i:329-385 [98231] picpiclink
          4. region m:329-385 [98234] picpiclink
        13. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, mg, na
          1. region a:329-385 [122271] picpiclink
        14. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, mg, na
          1. region e:329-385 [122274] picpiclink
        15. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, mg, na
          1. region i:329-385 [122277] picpiclink
        16. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, mg, na
          1. region m:329-385 [122280] picpiclink
        17. 2bcu picpicxrefxref
          automatically matched to d1rzta2
          complexed with na, ppv
          1. region a:329-385 [128314] picpiclink
        18. 3c5f picpicxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with na; mutant
          1. region a:329-385 [155938] picpiclink
        19. 3c5f picpicxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with na; mutant
          1. region b:329-385 [155941] picpiclink
        20. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, cl, edo, mg, na
          1. region a:329-385 [135814] picpiclink
        21. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, cl, edo, mg, na
          1. region e:329-385 [135817] picpiclink
        22. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, cl, edo, mg, na
          1. region i:329-385 [135820] picpiclink
        23. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1rzta2
          complexed with cac, cl, edo, mg, na
          1. region m:329-385 [135823] picpiclink
        24. 2pfq picpicxrefxref
          automatically matched to d1rzta2
          complexed with dcp, mg, mn, na, ppv; mutant
          1. region a:329-385 [139682] picpiclink
  2. PsbU-like [158539] (1)
    Pfam 06514
    1. Photosystem II 12 kDa extrinsic protein PsbU [158540]
      1. Thermosynechococcus elongatus [TaxId: 146786] [158541] (1)
        SQ Q9F1L5 37-134
        1. 2axt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with bcr, bct, ca, cla, dgd, fe2, hem, lhg, lmt, mge, oec, pho, pq9, sqd
          1. region u:37-134 [144940] picpiclink

Enter search key:

MRC
site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk