Structural Classification of Proteins
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Family: DNA polymerase beta-like, second domain

topological similarity to the N-terminal domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: SAM domain-like [47768]
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily: PsbU/PolX domain-like [81585]
    contains one classic and one pseudo HhH motifs
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase beta-like, second domain [81584]
    topological similarity to the N-terminal domain

Protein Domains:

  1. DNA polymerase beta [81579]
    1. Human (Homo sapiens) [TaxId: 9606] [81575] (107)
      1. 2fmp picpicxrefxref
        automatically matched to d1bpxa3
        complexed with dct, doc, mg, na
        1. region a:92-148 [133787] picpiclink
      2. 1tv9 picpicxrefxref
        complexed with mg, na, po4
        1. region a:92-148 [112676] picpiclink
      3. 2fms picpicxrefxref
        automatically matched to d1bpxa3
        complexed with cl, dup, mg, na
        1. region a:92-148 [133793] picpiclink
      4. 2i9g picpicxrefxref
        automatically matched to d1bpxa3
        complexed with bpi, cl, doc, na
        1. region a:92-148 [137127] picpiclink
      5. 2iso picpicxrefxref
        automatically matched to d1bpxa3
        complexed with cl, doc, gff, mg, na
        1. region a:92-148 [137607] picpiclink
      6. 2fmq picpicxrefxref
        automatically matched to d1bpxa3
        complexed with dup, mg, na
        1. region a:92-148 [133790] picpiclink
      7. 2pxi picpicxrefxref
        automatically matched to d1bpxa3
        complexed with cl, doc, gfh, mg, na
        1. region a:92-148 [149912] picpiclink
      8. 2isp picpicxrefxref
        automatically matched to d1bpxa3
        complexed with cl, doc, ggh, mg, na
        1. region a:92-148 [137610] picpiclink
      9. 1zjm picpicxrefxref
        automatically matched to d1bpxa3
        complexed with na
        1. region a:92-148 [125154] picpiclink
      10. 3c2m picpicxrefxref
        automatically matched to d1bpxa3
        complexed with edo, f2a, mn, na
        1. region a:92-148 [155883] picpiclink
      11. 3c2k picpicxrefxref
        automatically matched to d1bpxa3
        complexed with cl, dup, mn, na
        1. region a:92-148 [155877] picpiclink
      12. 1tva picpicxrefxref
        complexed with mg, na, po4
        1. region a:92-148 [112679] picpiclink
      13. 2p66 picpicxrefxref
        automatically matched to d1bpxa3
        complexed with 3dr, na, po4
        1. region a:92-148 [139507] picpiclink
      14. 1zjn picpicxrefxref
        automatically matched to d1bpxa3
        complexed with dgt, mg, na
        1. region a:92-148 [125157] picpiclink
      15. 1mq3 picpicxrefxref
        complexed with 8og, dcp, doc, mg, na
        1. region a:92-148 [79398] picpiclink
      16. 3c2l picpicxrefxref
        automatically matched to d1bpxa3
        complexed with f2a, mn, na
        1. region a:92-148 [155880] picpiclink
      17. 1mq2 picpicxrefxref
        complexed with 2da, 8og, a, na
        1. region a:92-148 [79395] picpiclink
      18. 1bpy picpicxrefxref
        protein/DNA complex; complexed with dct, doc, mg, na
        1. region a:92-148 [75819] picpiclink
      19. 9icw picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:92-148 [76129] picpiclink
      20. 9ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76105] picpiclink
      21. 9icx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76131] picpiclink
      22. 9icl picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:92-148 [76107] picpiclink
      23. 7ici picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76008] picpiclink
      24. 9icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76109] picpiclink
      25. 7ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76012] picpiclink
      26. 7icq picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76024] picpiclink
      27. 1zqp picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:92-148 [75965] picpiclink
      28. 7ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76000] picpiclink
      29. 8ico picpicxrefxref
        protein/DNA complex; complexed with azt, mn, na
        1. region a:92-148 [76062] picpiclink
      30. 9ico picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76113] picpiclink
      31. 1zqi picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:92-148 [75951] picpiclink
      32. 8ick picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:92-148 [76054] picpiclink
      33. 7icn picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76018] picpiclink
      34. 9icv picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:92-148 [76127] picpiclink
      35. 8icc picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76040] picpiclink
      36. 8ici picpicxrefxref
        protein/DNA complex; complexed with mg, na
        1. region a:92-148 [76050] picpiclink
      37. 7ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76006] picpiclink
      38. 7ict picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76030] picpiclink
      39. 7icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76016] picpiclink
      40. 9icn picpicxrefxref
        protein/DNA complex; complexed with dct, mg, na
        1. region a:92-148 [76111] picpiclink
      41. 7icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76004] picpiclink
      42. 8ics picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:92-148 [76070] picpiclink
      43. 9icu picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:92-148 [76125] picpiclink
      44. 8icn picpicxrefxref
        protein/DNA complex; complexed with atp, mn, na
        1. region a:92-148 [76060] picpiclink
      45. 9ics picpicxrefxref
        protein/DNA complex; complexed with dct, mn, na
        1. region a:92-148 [76121] picpiclink
      46. 9icq picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:92-148 [76117] picpiclink
      47. 8icp picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:92-148 [76064] picpiclink
      48. 9icr picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:92-148 [76119] picpiclink
      49. 9ict picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:92-148 [76123] picpiclink
      50. 8icq picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76066] picpiclink
      51. 7icr picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76026] picpiclink
      52. 7icp picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76022] picpiclink
      53. 9icg picpicxrefxref
        protein/DNA complex; complexed with dcp, na, zn
        1. region a:92-148 [76097] picpiclink
      54. 9ich picpicxrefxref
        protein/DNA complex; complexed with dgt, na, zn
        1. region a:92-148 [76099] picpiclink
      55. 9icj picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:92-148 [76103] picpiclink
      56. 8icr picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:92-148 [76068] picpiclink
      57. 1zqk picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:92-148 [75955] picpiclink
      58. 8icm picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:92-148 [76058] picpiclink
      59. 1zqa picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:92-148 [75935] picpiclink
      60. 8icx picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:92-148 [76080] picpiclink
      61. 8ica picpicxrefxref
        protein/DNA complex; complexed with ca, dtp, na
        1. region a:92-148 [76036] picpiclink
      62. 8icz picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:92-148 [76084] picpiclink
      63. 7ics picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76028] picpiclink
      64. 1zqf picpicxrefxref
        protein/DNA complex; complexed with cs
        1. region a:92-148 [75945] picpiclink
      65. 9icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:92-148 [76095] picpiclink
      66. 9ica picpicxrefxref
        protein/DNA complex; complexed with mn, stp
        1. region a:92-148 [76087] picpiclink
      67. 1zqb picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:92-148 [75937] picpiclink
      68. 8icb picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76038] picpiclink
      69. 7icf picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:92-148 [76002] picpiclink
      70. 7icl picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76014] picpiclink
      71. 9icc picpicxrefxref
        protein/DNA complex; complexed with cr, dtp, na
        1. region a:92-148 [76091] picpiclink
      72. 9icb picpicxrefxref
        protein/DNA complex; complexed with co, dtp, na
        1. region a:92-148 [76089] picpiclink
      73. 8icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76046] picpiclink
      74. 8icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na
        1. region a:92-148 [76044] picpiclink
      75. 1zqg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75947] picpiclink
      76. 1zqm picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:92-148 [75959] picpiclink
      77. 8icl picpicxrefxref
        protein/DNA complex; complexed with dtp, na, ni
        1. region a:92-148 [76056] picpiclink
      78. 1zqo picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75963] picpiclink
      79. 8icu picpicxrefxref
        protein/DNA complex; complexed with dad, mn, na
        1. region a:92-148 [76074] picpiclink
      80. 9icy picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:92-148 [76133] picpiclink
      81. 1zqn picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:92-148 [75961] picpiclink
      82. 8icv picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:92-148 [76076] picpiclink
      83. 8icy picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:92-148 [76082] picpiclink
      84. 8ict picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:92-148 [76072] picpiclink
      85. 1zqs picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75971] picpiclink
      86. 9icp picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76115] picpiclink
      87. 1zqc picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:92-148 [75939] picpiclink
      88. 1bpx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75817] picpiclink
      89. 7ico picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76020] picpiclink
      90. 9ici picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [76101] picpiclink
      91. 1bpz picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75821] picpiclink
      92. 7icu picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:92-148 [76032] picpiclink
      93. 1zql picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:92-148 [75957] picpiclink
      94. 8icj picpicxrefxref
        protein/DNA complex; complexed with na, ttp
        1. region a:92-148 [76052] picpiclink
      95. 8ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76048] picpiclink
      96. 8ice picpicxrefxref
        protein/DNA complex; complexed with cd, dtp, na
        1. region a:92-148 [76042] picpiclink
      97. 7icv picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76034] picpiclink
      98. 1zqq picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:92-148 [75967] picpiclink
      99. 1zqd picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:92-148 [75941] picpiclink
      100. 8icw picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:92-148 [76078] picpiclink
      101. 7icj picpicxrefxref
        protein/DNA complex; complexed with cu, na
        1. region a:92-148 [76010] picpiclink
      102. 1zqt picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:92-148 [75973] picpiclink
      103. 1zqe picpicxrefxref
        protein/DNA complex; complexed with cr
        1. region a:92-148 [75943] picpiclink
      104. 1zqr picpicxrefxref
        protein/DNA complex; complexed with na, ni
        1. region a:92-148 [75969] picpiclink
      105. 9ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [76093] picpiclink
      106. 1zqj picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:92-148 [75953] picpiclink
      107. 1zqh picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:92-148 [75949] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [81577] (18)
      1. 2van picpicxref
        automatically matched to d1bpba1
        mutant
        1. region a:91-148 [152826] picpiclink
      2. 1jn3 picpicxref
        mutant
        1. region a:91-148 [75864] picpiclink
      3. 1rpl picpicxref
        1. region a:95-148 [75933] picpiclink
      4. 1zqw picpicxref
        1. region a:91-148 [75979] picpiclink
      5. 1zqy picpicxref
        1. region a:91-148 [75983] picpiclink
      6. 1huz picpicxrefxref
        complexed with cr, mdn
        1. region a:92-148 [75850] picpiclink
        2. region b:92-148 [75852] picpiclink
      7. 1bpb picpicxref
        1. region a:91-148 [75811] picpiclink
      8. 1huo picpicxrefxref
        complexed with cr, tte
        1. region a:92-148 [75846] picpiclink
        2. region b:92-148 [75848] picpiclink
      9. 1zqu picpicxref
        1. region a:91-148 [75975] picpiclink
      10. 1zqx picpicxref
        1. region a:91-148 [75981] picpiclink
      11. 2bpc picpicxref
        complexed with mn
        1. region a:91-148 [75989] picpiclink
      12. 1zqz picpicxref
        complexed with mn
        1. region a:91-148 [75985] picpiclink
      13. 1nom picpicxref
        complexed with mn
        1. region a:91-148 [75929] picpiclink
      14. 1zqv picpicxref
        complexed with ca
        1. region a:91-148 [75977] picpiclink
      15. 2bpf picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:92-148 [75991] picpiclink
      16. 2bpg picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:92-148 [75993] picpiclink
        2. region b:92-148 [75995] picpiclink
      17. 1bpd picpicxrefxref
        complexed with po4
        1. region a:92-148 [75813] picpiclink
      18. 1bpe picpicxrefxref
        complexed with dtp
        1. region a:92-148 [75815] picpiclink
  2. Terminal deoxynucleotidyl transferase [81583]
    1. Mouse (Mus musculus) [TaxId: 10090] [81582] (3)
      1. 1jms picpicxrefxref
        complexed with mg, na
        1. region a:243-302 [75862] picpiclink
      2. 1kdh picpicxrefxref
        complexed with bro, mg, na
        1. region a:243-302 [75882] picpiclink
      3. 1kej picpicxrefxref
        complexed with co, dad, na
        1. region a:243-302 [75884] picpiclink
  3. DNA polymerase lambda [101253]
    1. Human (Homo sapiens) [TaxId: 9606] [101254] (24)
      1. 2bcq picpicxrefxref
        automatically matched to d1rzta2
        complexed with edo, mg, na, ppv
        1. region a:329-385 [128305] picpiclink
      2. 2bcr picpicxrefxref
        automatically matched to d1rzta2
        complexed with edo, mg, na, ppv
        1. region a:329-385 [128308] picpiclink
      3. 2pfn picpicxrefxref
        automatically matched to d1rzta2
        complexed with dup, mg, na; mutant
        1. region a:329-385 [139673] picpiclink
      4. 1xsn picpicxrefxref
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:329-385 [122283] picpiclink
      5. 2bcv picpicxrefxref
        automatically matched to d1rzta2
        complexed with mg, na, o2c, ttp
        1. region a:329-385 [128317] picpiclink
      6. 2pfo picpicxrefxref
        automatically matched to d1rzta2
        complexed with dup, edo, mg, mn, na; mutant
        1. region a:329-385 [139676] picpiclink
      7. 2pfp picpicxrefxref
        automatically matched to d1rzta2
        complexed with dcp, mg, na; mutant
        1. region a:329-385 [139679] picpiclink
      8. 1xsp picpicxrefxref
        automatically matched to d1rzta2
        complexed with na, ppv; mutant
        1. region a:329-385 [122286] picpiclink
      9. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:329-385 [155944] picpiclink
      10. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region b:329-385 [155947] picpiclink
      11. 2bcs picpicxrefxref
        automatically matched to d1rzta2
        complexed with mg, na, ppv
        1. region a:329-385 [128311] picpiclink
      12. 1rzt picpicxrefxref
        complexed with edo, na; mutant
        1. region a:329-385 [98225] picpiclink
        2. region e:329-385 [98228] picpiclink
        3. region i:329-385 [98231] picpiclink
        4. region m:329-385 [98234] picpiclink
      13. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, mg, na
        1. region a:329-385 [122271] picpiclink
      14. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, mg, na
        1. region e:329-385 [122274] picpiclink
      15. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, mg, na
        1. region i:329-385 [122277] picpiclink
      16. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, mg, na
        1. region m:329-385 [122280] picpiclink
      17. 2bcu picpicxrefxref
        automatically matched to d1rzta2
        complexed with na, ppv
        1. region a:329-385 [128314] picpiclink
      18. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with na; mutant
        1. region a:329-385 [155938] picpiclink
      19. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with na; mutant
        1. region b:329-385 [155941] picpiclink
      20. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        1. region a:329-385 [135814] picpiclink
      21. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        1. region e:329-385 [135817] picpiclink
      22. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        1. region i:329-385 [135820] picpiclink
      23. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta2
        complexed with cac, cl, edo, mg, na
        1. region m:329-385 [135823] picpiclink
      24. 2pfq picpicxrefxref
        automatically matched to d1rzta2
        complexed with dcp, mg, mn, na, ppv; mutant
        1. region a:329-385 [139682] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk