Structural Classification of Proteins
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Superfamily: Viral protein domain

forms homotrimers
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Viral protein domain [49817]
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. Superfamily: Viral protein domain [49818]
    forms homotrimers
    link to SUPERFAMILY database - Superfamily

Families:

  1. Top domain of virus capsid protein [49819] (4)
    this domain is inserted into a multihelical domain
    1. BTV vp7, central (top) domain [49820]
      1. Bluetongue virus [TaxId: 40051] [49821] (2)
        1. 1bvp picpicxref
          1. region 1:121-254 [23775] picpiclink
          2. region 2:121-254 [23776] picpiclink
          3. region 3:121-254 [23777] picpiclink
          4. region 4:121-254 [23778] picpiclink
          5. region 5:121-254 [23779] picpiclink
          6. region 6:121-254 [23780] picpiclink
        2. 2btv picpicxrefxref
          1. region p:121-254 [23781] picpiclink
          2. region c:121-254 [23782] picpiclink
          3. region d:121-254 [23783] picpiclink
          4. region q:121-254 [23784] picpiclink
          5. region e:121-254 [23785] picpiclink
          6. region f:121-254 [23786] picpiclink
          7. region r:121-254 [23787] picpiclink
          8. region g:121-254 [23788] picpiclink
          9. region h:121-254 [23789] picpiclink
          10. region s:121-254 [23790] picpiclink
          11. region i:121-254 [23791] picpiclink
          12. region j:121-254 [23792] picpiclink
          13. region t:121-254 [23793] picpiclink
    2. RDV p8, central (top) domain [100924]
      1. Rice dwarf virus [TaxId: 10991] [101592] (1)
        1. 1uf2 picpicxrefxref
          1. region c:148-300 [99292] picpiclink
          2. region d:148-300 [99294] picpiclink
          3. region e:148-300 [99296] picpiclink
          4. region f:148-300 [99298] picpiclink
          5. region g:148-300 [99300] picpiclink
          6. region h:148-300 [99302] picpiclink
          7. region i:148-300 [99304] picpiclink
          8. region j:148-300 [99306] picpiclink
          9. region p:148-300 [99308] picpiclink
          10. region q:148-300 [99310] picpiclink
          11. region r:148-300 [99312] picpiclink
          12. region s:148-300 [99314] picpiclink
          13. region t:148-300 [99316] picpiclink
      2. African horse sickness virus [TaxId: 40050] [49822] (1)
        1. 1ahs picpic
          1. chain a [23794] picpiclink
          2. chain b [23795] picpiclink
          3. chain c [23796] picpiclink
    3. vp6, the major capsid protein of group A rotavirus [63718]
      1. Bovine rotavirus [TaxId: 10927] [63719] (1)
        1. 1qhd picpicxref
          complexed with ace, ca, cl, zn
          1. region a:149-332 [63325] picpiclink
  2. Influenza hemagglutinin headpiece [49823] (1)
    1. Hemagglutinin [49824]
      includes rudiment esterase domain
      1. Influenza A virus, different strains [TaxId: 11320] [49825] (49)
        1. 1jsd picpicxref
          complexed with nag, po4
          1. chain a [63258] picpiclink
        2. 1jsm picpicxref
          complexed with nag
          1. chain a [63264] picpiclink
        3. 1jsh picpicxref
          complexed with gal, nag, sia
          1. chain a [63260] picpiclink
        4. 1rvx picpicxref
          1934 human H1
          complexed with gal, nag, sia
          1. chain a [97937] picpiclink
          2. chain c [97939] picpiclink
          3. chain e [97941] picpiclink
          4. chain g [97943] picpiclink
          5. chain i [97945] picpiclink
          6. chain k [97947] picpiclink
        5. 1jsi picpicxref
          complexed with gal, glc, nag, sia
          1. chain a [63262] picpiclink
        6. 1rvz picpicxref
          1934 human H1
          complexed with gal, nag, sia
          1. chain a [97949] picpiclink
          2. chain c [97951] picpiclink
          3. chain e [97953] picpiclink
          4. chain g [97955] picpiclink
          5. chain i [97957] picpiclink
          6. chain k [97959] picpiclink
        7. 1jso picpicxref
          complexed with nag, sia
          1. chain a [63268] picpiclink
        8. 1ru7 picpicxref
          1934 human H1
          1. chain a [97837] picpiclink
          2. chain c [97839] picpiclink
          3. chain e [97841] picpiclink
          4. chain g [97843] picpiclink
          5. chain i [97845] picpiclink
          6. chain k [97847] picpiclink
        9. 2viu picpicxref
          complexed with man, nag; mutant
          1. chain a [23797] picpiclink
        10. 1rvt picpicxref
          1930 swine H1
          complexed with gal, glc, nag, sia
          1. chain h [97931] picpiclink
          2. chain j [97933] picpiclink
          3. chain l [97935] picpiclink
        11. 1rv0 picpicxref
          1930 swine H1
          complexed with dan, nag
          1. chain h [97895] picpiclink
          2. chain j [97897] picpiclink
          3. chain l [97899] picpiclink
        12. 1jsn picpicxref
          complexed with gal, nag, sia
          1. chain a [63266] picpiclink
        13. 1hge picpicxref
          complexed with man, mna, nag; mutant
          1. chain a [23816] picpiclink
          2. chain c [23817] picpiclink
          3. chain e [23818] picpiclink
        14. 1ruy picpicxref
          1930 swine H1
          complexed with nag
          1. chain h [97883] picpiclink
          2. chain j [97885] picpiclink
          3. chain l [97887] picpiclink
        15. 1hgj picpicxref
          complexed with amn, man, nag
          1. chain a [23801] picpiclink
          2. chain c [23802] picpiclink
          3. chain e [23803] picpiclink
        16. 1hgi picpicxref
          complexed with ana, man, nag
          1. chain a [23798] picpiclink
          2. chain c [23799] picpiclink
          3. chain e [23800] picpiclink
        17. 1hgh picpicxref
          complexed with man, mna, nag
          1. chain a [23804] picpiclink
          2. chain c [23805] picpiclink
          3. chain e [23806] picpiclink
        18. 1hgd picpicxref
          complexed with man, nag; mutant
          1. chain a [23819] picpiclink
          2. chain c [23820] picpiclink
          3. chain e [23821] picpiclink
        19. 1eo8 picpicxrefxrefxrefxrefxref
          complexed with man, nag
          1. chain a [23823] picpiclink
        20. 1qfu picpicxrefxrefxrefxrefxref
          complexed with man, nag
          1. chain a [23822] picpiclink
        21. 1ha0 picpicxref
          complexed with man, nag; mutant
          1. region a:9-329 [23824] picpiclink
        22. 1hgg picpicxref
          complexed with gal, glc, man, nag, nan
          1. chain a [23809] picpiclink
          2. chain c [23810] picpiclink
          3. chain e [23811] picpiclink
        23. 1mqm picpicxref
          complexed with gal, man, nag, sia
          1. chain a [91406] picpiclink
          2. chain d [91408] picpiclink
          3. chain g [91410] picpiclink
        24. 1ruz picpicxref
          1918 human H1
          complexed with nag
          1. chain h [97889] picpiclink
          2. chain j [97891] picpiclink
          3. chain l [97893] picpiclink
        25. 1hgf picpicxref
          complexed with man, nag
          1. chain a [23813] picpiclink
          2. chain c [23814] picpiclink
          3. chain e [23815] picpiclink
        26. 2ibx picpicxrefxrefxref
          complexed with nag
          1. region a:5-325 [137209] picpiclink
        27. 2ibx picpicxrefxrefxref
          automatically matched to 2IBX A:5-325
          complexed with nag
          1. region c:5-325 [137211] picpiclink
        28. 2ibx picpicxrefxrefxref
          automatically matched to 2IBX A:5-325
          complexed with nag
          1. region e:5-325 [137213] picpiclink
        29. 3hmg picpicxref
          complexed with man, nag; mutant
          1. chain a [23825] picpiclink
          2. chain c [23826] picpiclink
          3. chain e [23827] picpiclink
        30. 2hmg picpicxref
          complexed with man, nag; mutant
          1. chain a [23828] picpiclink
          2. chain c [23829] picpiclink
          3. chain e [23830] picpiclink
        31. 4hmg picpicxref
          complexed with man, nag, sia; mutant
          1. chain a [23831] picpiclink
          2. chain c [23832] picpiclink
          3. chain e [23833] picpiclink
        32. 5hmg picpicxref
          complexed with man, nag, sia; mutant
          1. chain a [23834] picpiclink
          2. chain c [23835] picpiclink
          3. chain e [23836] picpiclink
        33. 1ti8 picpicxref
          complexed with man, nag, ndg
          1. region a:13-325 [119279] picpiclink
        34. 2vit picpicxrefxrefxrefxref
          complexed with zn; mutant
          1. chain c [23808] picpiclink
        35. 2vis picpicxrefxrefxrefxref
          complexed with nag, zn; mutant
          1. chain c [23807] picpiclink
        36. 2vir picpicxrefxrefxrefxref
          complexed with zn
          1. chain c [23812] picpiclink
        37. 1mqn picpicxref
          complexed with gal, man, nag, sia
          1. chain a [91412] picpiclink
          2. chain d [91414] picpiclink
          3. chain g [91416] picpiclink
        38. 1mql picpicxref
          complexed with man, nag
          1. chain a [91400] picpiclink
          2. chain d [91402] picpiclink
          3. chain g [91404] picpiclink
        39. 1rd8 picpicxref
          1918 human H1
          complexed with man, nag, po4
          1. chain a [97308] picpiclink
          2. chain c [97310] picpiclink
          3. chain e [97312] picpiclink
        40. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with bma, nag
          1. region a:11-324 [133628] picpiclink
        41. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region c:11-324 [133630] picpiclink
        42. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region e:11-324 [133632] picpiclink
        43. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region g:11-324 [133634] picpiclink
        44. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region i:11-324 [133636] picpiclink
        45. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region k:11-324 [133638] picpiclink
        46. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region m:11-324 [133640] picpiclink
        47. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region o:11-324 [133642] picpiclink
        48. 2fk0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FK0 A:11-324
          complexed with bma, nag
          1. region q:11-324 [133644] picpiclink
        49. 1ken picpicxrefxrefxrefxrefxref
          complexed with man, nag
          1. chain a [72373] picpiclink
          2. chain c [72375] picpiclink
          3. chain e [72377] picpiclink
  3. Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein HEF1 [49826] (1)
    1. Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein HEF1 [49827]
      includes irregular N- and C-terminal extensions
      1. Influenza C virus [TaxId: 11552] [49828] (1)
        1. 1flc picpicxrefxref
          1. region a:151-306 [23837] picpiclink
          2. region c:151-306 [23838] picpiclink
          3. region e:151-306 [23839] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk