Structural Classification of Proteins
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Superfamily: Metallo-dependent hydrolases

the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Metallo-dependent hydrolases [51556]
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
    link to SUPERFAMILY database - Superfamily

Families:

  1. Adenosine/AMP deaminase [51557] (4)
    1. Adenosine deaminase (ADA) [51558]
      Common fold covers the whole protein structure
      1. Mouse (Mus musculus) [TaxId: 10090] [51559] (8)
        1. 1a4m picpic
          complexed with prh, zn
          1. chain a [29014] picpiclink
          2. chain b [29015] picpiclink
          3. chain c [29016] picpiclink
          4. chain d [29017] picpiclink
        2. 1fkx picpic
          complexed with prh, zn; mutant
          1. chain a [29018] picpiclink
        3. 1fkw picpic
          complexed with pur, zn; mutant
          1. chain a [29019] picpiclink
        4. 1a4l picpic
          complexed with dcf, zn
          1. chain a [29023] picpiclink
          2. chain b [29024] picpiclink
          3. chain c [29025] picpiclink
          4. chain d [29026] picpiclink
        5. 1uip picpic
          complexed with pur, zn; mutant
          1. chain a [29022] picpiclink
        6. 1uio picpic
          complexed with hpr, zn; mutant
          1. chain a [29021] picpiclink
        7. 1add picpic
          complexed with 1da, zn
          1. chain a [29020] picpiclink
        8. 2ada picpic
          complexed with hpr, zn
          1. chain a [29027] picpiclink
      2. Cow (Bos taurus) [TaxId: 9913] [82257] (20)
        SQ P56658 3-350 ! SQ P56658
        1. 1vfl picpic
          automatically matched to d1ndva_
          complexed with zn
          1. region a:1-349 [120041] picpiclink
        2. 1ndy picpic
          complexed with fr3, zn
          1. chain a [91826] picpiclink
        3. 1ndw picpic
          complexed with fr2, zn
          1. chain a [91825] picpiclink
        4. 1ndz picpic
          complexed with fr5, zn
          1. chain a [91827] picpiclink
        5. 2z7g picpic
          automatically matched to d1ndva_
          complexed with eh9, zn
          1. region a:1-349 [154197] picpiclink
        6. 1uml picpic
          complexed with fr4, zn
          1. chain a [107957] picpiclink
        7. 1qxl picpic
          complexed with fr8, zn
          1. chain a [104644] picpiclink
        8. 1o5r picpic
          complexed with fr9, zn
          1. chain a [103890] picpiclink
        9. 1wxz picpic
          automatically matched to d1ndva_
          complexed with frl, zn
          1. region a:4-352 [121427] picpiclink
        10. 1ndv picpic
          complexed with fr0, zn
          1. chain a [91824] picpiclink
        11. 2e1w picpic
          automatically matched to d1ndva_
          complexed with fr6, zn
          1. region a:4-352 [131972] picpiclink
        12. 1w1i picpicxrefxref
          complexed with afl, bma, man, nag, ndg, zn
          1. chain e [109051] picpiclink
          2. chain f [109052] picpiclink
          3. chain g [109053] picpiclink
          4. chain h [109054] picpiclink
        13. 1v7a picpic
          complexed with frc, zn
          1. chain a [113560] picpiclink
        14. 1wxy picpic
          automatically matched to d1ndva_
          complexed with frk, zn
          1. region a:4-352 [121426] picpiclink
        15. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1w1ie_
          complexed with bma, ful, man, nag, zn; mutant
          1. region e:4-355 [128492] picpiclink
        16. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1w1ie_
          complexed with bma, ful, man, nag, zn; mutant
          1. region f:4-355 [128493] picpiclink
        17. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1w1ie_
          complexed with bma, ful, man, nag, zn; mutant
          1. region g:4-355 [128494] picpiclink
        18. 2bgn picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1w1ie_
          complexed with bma, ful, man, nag, zn; mutant
          1. region h:4-355 [128495] picpiclink
        19. 1krm picpic
          complexed with prh, zn
          1. chain a [77513] picpiclink
        20. 1v79 picpic
          complexed with fr7, zn
          1. chain a [113559] picpiclink
      3. Plasmodium yoelii [TaxId: 5861] [141799] (2)
        SQ Q7RMV2 8-364
        1. 2amx picpic
          complexed with co, unx
          1. region a:20-376 [127024] picpiclink
        2. 2amx picpic
          automatically matched to 2AMX A:20-376
          complexed with co, unx
          1. region b:20-376 [127025] picpiclink
    2. AMP deaminase (AMPD), catalytic domain [141800]
      elaborated fold with additional structures
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [141801] (1)
        SQ O80452 212-839
        1. 2a3l picpic
          complexed with cf5, po4, zn
          1. region a:212-839 [126091] picpiclink
  2. Dihydroorotase [63917] (1)
    1. Dihydroorotase [63918]
      1. Escherichia coli [TaxId: 562] [63919] (9)
        1. 2eg6 picpic
          automatically matched to d1xgea1
          complexed with zn
          1. region a:4-346 [146826] picpiclink
        2. 2eg6 picpic
          automatically matched to d1xgea1
          complexed with zn
          1. region b:4-346 [146827] picpiclink
        3. 1xge picpic
          complexed with dor, ncd, zn
          1. region a:4-346 [121974] picpiclink
        4. 1xge picpic
          automatically matched to 1XGE A:4-346
          complexed with dor, ncd, zn
          1. region b:4-346 [121975] picpiclink
        5. 1j79 picpic
          complexed with ncd, oro, zn
          1. chain a [62675] picpiclink
          2. chain b [62676] picpiclink
        6. 2eg7 picpic
          automatically matched to d1xgea1
          complexed with otd, zn
          1. region a:4-346 [146828] picpiclink
        7. 2eg7 picpic
          automatically matched to d1xgea1
          complexed with otd, zn
          1. region b:4-346 [146829] picpiclink
        8. 2eg8 picpic
          automatically matched to d1xgea1
          complexed with fot, zn
          1. region a:4-346 [146830] picpiclink
        9. 2eg8 picpic
          automatically matched to d1xgea1
          complexed with fot, zn
          1. region b:4-346 [146831] picpiclink
  3. Cytosine deaminase catalytic domain [69390] (1)
    1. Cytosine deaminase catalytic domain [69391]
      1. Escherichia coli [TaxId: 562] [69392] (8)
        SQ P25524
        1. 1ra0 picpicxref
          complexed with fe, fpy; mutant
          1. region a:56-375 [111757] picpiclink
        2. 1rak picpicxref
          complexed with fe, fpy, gol; mutant
          1. region a:56-375 [111762] picpiclink
        3. 1r9z picpicxref
          complexed with fe, gol, mg; mutant
          1. region a:56-375 [111755] picpiclink
        4. 1ra5 picpicxref
          complexed with fe, fpy, gol; mutant
          1. region a:56-375 [111760] picpiclink
        5. 1r9x picpicxref
          complexed with fe, gol, mg; mutant
          1. region a:56-375 [111751] picpiclink
        6. 1r9y picpicxref
          complexed with fe, gol, mg; mutant
          1. region a:56-375 [111753] picpiclink
        7. 1k6w picpicxref
          complexed with fe
          1. region a:56-375 [68237] picpiclink
        8. 1k70 picpicxref
          complexed with fe, hpy
          1. region a:56-375 [68250] picpiclink
  4. alpha-subunit of urease, catalytic domain [51560] (3)
    1. alpha-subunit of urease, catalytic domain [51561]
      1. Klebsiella aerogenes [TaxId: 28451] [51562] (27)
        1. 1ejx picpicxrefxrefxref
          complexed with kcx, ni
          1. region c:1130-1422,c:1476-1567 [83185] picpiclink
        2. 1ejr picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:1130-1422,c:1476-1567 [29042] picpiclink
        3. 1fwc picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29032] picpiclink
        4. 1ejt picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:1130-1422,c:1476-1567 [29043] picpiclink
        5. 1fwa picpicxrefxrefxref
          complexed with co3, ni; mutant
          1. region c:130-422,c:476-567 [29030] picpiclink
        6. 1fwd picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29033] picpiclink
        7. 1fwb picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29031] picpiclink
        8. 1fwi picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29029] picpiclink
        9. 1fwf picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29028] picpiclink
        10. 1ejw picpicxrefxrefxref
          complexed with ni
          1. region c:1130-1422,c:1476-1567 [90456] picpiclink
        11. 1fwg picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29035] picpiclink
        12. 2kau picpicxrefxrefxref
          CASP1
          complexed with cbx, ni
          1. region c:130-422,c:476-567 [29034] picpiclink
        13. 1fwh picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:130-422,c:476-567 [29036] picpiclink
        14. 1eju picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:1130-1422,c:1476-1567 [29044] picpiclink
        15. 1ejs picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:1130-1422,c:1476-1567 [29046] picpiclink
        16. 1a5m picpicxrefxrefxref
          mutant
          1. region c:130-422,c:476-567 [29045] picpiclink
        17. 1fwe picpicxrefxrefxref
          complexed with hae, ni; mutant
          1. region c:130-422,c:476-567 [29037] picpiclink
        18. 1fwj picpicxrefxrefxref
          complexed with ni
          1. region c:130-422,c:476-567 [29038] picpiclink
        19. 1a5k picpicxrefxrefxref
          mutant
          1. region c:130-422,c:476-567 [29047] picpiclink
        20. 1a5l picpicxrefxrefxref
          mutant
          1. region c:130-422,c:476-567 [29048] picpiclink
        21. 1a5n picpicxrefxrefxref
          complexed with fmt, ni; mutant
          1. region c:130-422,c:476-567 [29049] picpiclink
        22. 1ejv picpicxrefxrefxref
          complexed with ni; mutant
          1. region c:1130-1422,c:1476-1567 [29050] picpiclink
        23. 1kra picpicxrefxrefxref
          1. region c:130-422,c:476-567 [29039] picpiclink
        24. 1ef2 picpicxrefxrefxref
          complexed with mn
          1. region a:1130-1422,a:1476-1567 [29051] picpiclink
        25. 1krc picpicxrefxrefxref
          complexed with co2, ni; mutant
          1. region c:130-422,c:476-567 [29041] picpiclink
        26. 1krb picpicxrefxrefxref
          complexed with co2, ni; mutant
          1. region c:130-422,c:476-567 [29040] picpiclink
        27. 1a5o picpicxrefxrefxref
          complexed with fmt, ni; mutant
          1. region c:130-422,c:476-567 [29052] picpiclink
      2. Bacillus pasteurii [TaxId: 1474] [51563] (6)
        1. 4ubp picpicxrefxrefxref
          complexed with ace, hae, ni
          1. region c:132-434,c:484-570 [29053] picpiclink
        2. 1ubp picpicxrefxrefxref
          complexed with bme, cbx, ni
          1. region c:132-434,c:484-570 [29054] picpiclink
        3. 1ie7 picpicxrefxrefxref
          complexed with ni, po4
          1. region c:132-434,c:484-570 [62316] picpiclink
        4. 2ubp picpicxrefxrefxref
          1. region c:132-434,c:484-570 [29055] picpiclink
        5. 3ubp picpicxrefxrefxref
          1. region c:132-434,c:484-570 [29056] picpiclink
        6. 1s3t picpicxrefxrefxref
          complexed with bo3, ni, so4
          1. region c:132-434,c:484-570 [98463] picpiclink
      3. Helicobacter pylori [TaxId: 210] [69393] (2)
        1. 1e9y picpicxrefxrefxref
          complexed with hae, ni
          1. region b:132-431,b:481-569 [64849] picpiclink
        2. 1e9z picpicxrefxrefxref
          complexed with ni
          1. region b:132-431,b:481-569 [64853] picpiclink
  5. Hydantoinase (dihydropyrimidinase), catalytic domain [75073] (9)
    1. D-hydantoinase [75074]
      1. Thermus sp. [TaxId: 275] [75075] (2)
        1. 1gkp picpicxref
          complexed with epe, kcx, so4, zn
          1. region a:55-389 [70232] picpiclink
          2. region b:55-389 [70234] picpiclink
          3. region c:55-389 [70236] picpiclink
          4. region d:55-389 [70238] picpiclink
          5. region e:55-389 [70240] picpiclink
          6. region f:55-389 [70242] picpiclink
        2. 1gkq picpicxref
          complexed with kcx, zn
          1. region a:55-389 [70244] picpiclink
          2. region b:55-389 [70246] picpiclink
          3. region c:55-389 [70248] picpiclink
          4. region d:55-389 [70250] picpiclink
      2. Bacillus stearothermophilus [TaxId: 1422] [75076] (1)
        1. 1k1d picpicxref
          complexed with kcx, zn
          1. region a:53-384 [71980] picpiclink
          2. region b:53-384 [71982] picpiclink
          3. region c:53-384 [71984] picpiclink
          4. region d:53-384 [71986] picpiclink
          5. region e:53-384 [71988] picpiclink
          6. region f:53-384 [71990] picpiclink
          7. region g:53-384 [71992] picpiclink
          8. region h:53-384 [71994] picpiclink
      3. Burkholderia pickettii [TaxId: 329] [89488] (1)
        1. 1nfg picpicxref
          complexed with kcx, zn
          1. region a:52-381 [85633] picpiclink
          2. region b:52-381 [85635] picpiclink
          3. region c:52-381 [85637] picpiclink
          4. region d:52-381 [85639] picpiclink
      4. Bacillus sp. AR9 [TaxId: 301298] [141802] (2)
        SQ Q5DLU2 2-460
        1. 1yny picpicxrefxref
          complexed with mn
          1. region a:53-384 [123765] picpiclink
        2. 1yny picpicxrefxref
          automatically matched to 1YNY A:53-384
          complexed with mn
          1. region b:53-384 [123767] picpiclink
    2. L-hydantoinase [75077]
      1. Arthrobacter aurescens [TaxId: 43663] [75078] (1)
        1. 1gkr picpicxref
          complexed with kcx, zn
          1. region a:55-379 [70252] picpiclink
          2. region b:55-379 [70254] picpiclink
          3. region c:55-379 [70256] picpiclink
          4. region d:55-379 [70258] picpiclink
    3. Dihydropyrimidinase related protein-1 [102084]
      1. Mouse (Mus musculus) [TaxId: 10090] [102085] (1)
        1. 1kcx picpicxref
          structural genomics; NYSGR target T-45
          1. region a:67-400 [90954] picpiclink
          2. region b:67-400 [90956] picpiclink
    4. Two-domain dihydroorotase [141803]
      1. Aquifex aeolicus [TaxId: 63363] [141804] (3)
        SQ O66990 56-365
        1. 1xrt picpicxrefxref
          automatically matched to 1XRF A:56-365
          complexed with zn
          1. region a:56-365 [122259] picpiclink
        2. 1xrt picpicxrefxref
          automatically matched to 1XRF A:56-365
          complexed with zn
          1. region b:56-365 [122261] picpiclink
        3. 1xrf picpicxref
          complexed with so4, zn
          1. region a:56-365 [122255] picpiclink
    5. Dihydropyrimidine amidohydrolase Pyd2 [141805]
      1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [141806] (12)
        SQ Q9P903 57-440
        1. 2fvk picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with duc, zn
          1. region a:57-440 [134205] picpiclink
        2. 2fvk picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with duc, zn
          1. region b:57-440 [134207] picpiclink
        3. 2fvk picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with duc, zn
          1. region c:57-440 [134209] picpiclink
        4. 2fvk picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with duc, zn
          1. region d:57-440 [134211] picpiclink
        5. 2fvm picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with urp, zn
          1. region a:57-440 [134213] picpiclink
        6. 2fvm picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with urp, zn
          1. region b:57-440 [134215] picpiclink
        7. 2fvm picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with urp, zn
          1. region c:57-440 [134217] picpiclink
        8. 2fvm picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with urp, zn
          1. region d:57-440 [134219] picpiclink
        9. 2fty picpicxrefxrefxrefxref
          complexed with zn
          1. region a:57-440 [134088] picpiclink
        10. 2fty picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with zn
          1. region b:57-440 [134090] picpiclink
        11. 2fty picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with zn
          1. region c:57-440 [134092] picpiclink
        12. 2fty picpicxrefxrefxrefxref
          automatically matched to 2FTY A:57-440
          complexed with zn
          1. region d:57-440 [134094] picpiclink
      2. Dictyostelium discoideum [TaxId: 44689] [141807] (1)
        SQ Q86LT2 60-393
        1. 2ftw picpicxref
          complexed with mli, zn
          1. region a:60-393 [134084] picpiclink
  6. SAH/MTA deaminase-like [82258] (5)
    1. Hypothetical protein TM0936, probable catalytic domain [82259]
      1. Thermotoga maritima [TaxId: 2336] [82260] (3)
        1. 1p1m picpicxref
          structural genomics
          complexed with met, ni
          1. region a:50-330 [87697] picpiclink
        2. 1j6p picpicxref
          structural genomics
          complexed with mse, ni
          1. region a:50-330 [77090] picpiclink
        3. 2plm picpicxref
          automatically matched to d1j6pa2
          complexed with sib, zn
          1. region a:50-330 [149637] picpiclink
    2. Hypothetical protein GOS_1943094 [159389]
      1. Environmental samples [159390] (1)
        1. 2paj picpicxref
          complexed with zn
          1. region a:70-405 [149345] picpiclink
    3. Guanine deaminase [159391]
      1. Clostridium acetobutylicum [TaxId: 1488] [159392] (2)
        SQ Q97MB6 64-373
        CAC0282
        1. 2i9u picpicxrefxref
          complexed with fe, gol, gun
          1. region a:67-376 [147573] picpiclink
        2. 2i9u picpicxrefxref
          automatically matched to 2I9U A:67-376
          complexed with fe, gol, gun
          1. region b:67-376 [147575] picpiclink
      2. Bradyrhizobium japonicum [TaxId: 375] [159393] (1)
        SQ Q89NG0 71-395
        Blr3880
        1. 2ood picpicxref
          complexed with gun, zn
          1. region a:73-397 [148922] picpiclink
      3. Human (Homo sapiens) [TaxId: 9606] [159394] (1)
        SQ Q9Y2T3 76-388
        1. 2uz9 picpicxref
          complexed with xan, zn
          1. region a:76-388 [152324] picpiclink
  7. Isoaspartyl dipeptidase, catalytic domain [89489] (1)
    1. Isoaspartyl dipeptidase, catalytic domain [89490]
      1. Escherichia coli [TaxId: 562] [89491] (5)
        SQ P39377
        1. 1onw picpicxref
          complexed with cl, egl, kcx, mg, na, zn
          1. region a:63-346 [87173] picpiclink
          2. region b:63-346 [87175] picpiclink
        2. 1po9 picpicxref
          complexed with zn
          1. region a:63-346 [104200] picpiclink
          2. region b:63-346 [104202] picpiclink
        3. 1onx picpicxref
          complexed with asp, lcx, zn
          1. region a:63-346 [87177] picpiclink
          2. region b:63-346 [87179] picpiclink
        4. 1pok picpicxref
          complexed with asn, so4, zn
          1. region a:63-346 [104208] picpiclink
          2. region b:63-346 [104210] picpiclink
        5. 1poj picpicxref
          complexed with ae1, zn
          1. region a:63-346 [104204] picpiclink
          2. region b:63-346 [104206] picpiclink
  8. N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82261] (3)
    1. N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82262]
      1. Bacillus subtilis [TaxId: 1423] [102086] (1)
        1. 1un7 picpicxref
          complexed with 2pe, fe, glp
          1. region a:58-358 [99658] picpiclink
          2. region b:58-358 [99660] picpiclink
      2. Thermotoga maritima [TaxId: 2336] [82263] (1)
        TM0814
        1. 1o12 picpicxref
          structural genomics
          CASP5
          complexed with fe, mse
          1. region a:44-331 [80759] picpiclink
          2. region b:44-331 [80761] picpiclink
      3. Escherichia coli [TaxId: 562] [141808] (10)
        SQ P0AF18 54-350
        1. 1yrr picpicxrefxref
          automatically matched to 1YMY A:54-350
          complexed with gol, po4
          1. region a:54-350 [123936] picpiclink
        2. 1yrr picpicxrefxref
          automatically matched to 1YMY A:54-350
          complexed with gol, po4
          1. region b:54-350 [123938] picpiclink
        3. 2p53 picpicxrefxref
          automatically matched to d1ymya2
          complexed with nng, zn; mutant
          1. region a:54-350 [149232] picpiclink
        4. 2p53 picpicxrefxref
          automatically matched to d1ymya2
          complexed with nng, zn; mutant
          1. region b:54-350 [149234] picpiclink
        5. 2p50 picpicxrefxrefxrefxref
          automatically matched to d1ymya2
          complexed with zn
          1. region a:54-350 [149224] picpiclink
        6. 2p50 picpicxrefxrefxrefxref
          automatically matched to d1ymya2
          complexed with zn
          1. region b:54-350 [149226] picpiclink
        7. 2p50 picpicxrefxrefxrefxref
          automatically matched to d1ymya2
          complexed with zn
          1. region c:54-350 [149228] picpiclink
        8. 2p50 picpicxrefxrefxrefxref
          automatically matched to d1ymya2
          complexed with zn
          1. region d:54-350 [149230] picpiclink
        9. 1ymy picpicxrefxref
          1. region a:54-350 [123709] picpiclink
        10. 1ymy picpicxrefxref
          automatically matched to 1YMY A:54-350
          1. region b:54-350 [123711] picpiclink
  9. D-aminoacylase, catalytic domain [82264] (1)
    1. N-acyl-D-aminoacid amidohydrolase, catalytic domain [82265]
      contains small a/b subdomain inserted after strand 7; unusual for the superfamily metal coordination by Cys
      1. Alcaligenes faecalis [TaxId: 511] [82266] (8)
        1. 1m7j picpicxref
          complexed with act, zn
          1. region a:62-419 [78734] picpiclink
        2. 1rk6 picpicxref
          complexed with act, cd, zn2
          1. region a:62-419 [97601] picpiclink
        3. 1v51 picpicxref
          complexed with act, zn2
          1. region a:62-419 [100320] picpiclink
        4. 1v4y picpicxref
          complexed with act, zn2; mutant
          1. region a:62-419 [100317] picpiclink
        5. 1rjq picpicxref
          complexed with act, zn2; mutant
          1. region a:62-419 [97577] picpiclink
        6. 1rk5 picpicxref
          complexed with act, cu, zn2; mutant
          1. region a:62-419 [97598] picpiclink
        7. 1rjp picpicxref
          complexed with act, cu, zn2
          1. region a:62-419 [97574] picpiclink
        8. 1rjr picpicxref
          complexed with act, zn2; mutant
          1. region a:62-419 [97580] picpiclink
  10. TatD Mg-dependent DNase-like [82267] (4)
    1. Hypothetical protein TM0667 [82268]
      1. Thermotoga maritima [TaxId: 2336] [82269] (1)
        1. 1j6o picpic
          complexed with ipa, mse
          1. chain a [77088] picpiclink
    2. Putative deoxyribonuclease YcfH [141809]
      1. Escherichia coli [TaxId: 562] [141810] (2)
        SQ P0AFQ7 1-265
        1. 1yix picpic
          complexed with zn
          1. region a:1-265 [123371] picpiclink
        2. 1yix picpic
          automatically matched to 1YIX A:1-265
          complexed with zn
          1. region b:1-265 [123372] picpiclink
    3. Deoxyribonuclease TatD (MttC) [141811]
      1. Escherichia coli [TaxId: 562] [141812] (1)
        SQ P27859 1-260
        1. 1xwy picpic
          complexed with zn
          1. region a:1-260 [122411] picpiclink
    4. Putative deoxyribonuclease YjjV [141813]
      1. Escherichia coli [TaxId: 562] [141814] (1)
        SQ P39408 1-259
        1. 1zzm picpic
          complexed with p33, zn
          1. region a:1-259 [125911] picpiclink
  11. Phosphotriesterase-like [51564] (4)
    1. Phosphotriesterase (parathion hydrolase, PTE) [51565]
      1. Pseudomonas diminuta [TaxId: 293] [51566] (10)
        SQ P0A434 30-365
        1. 1i0d picpic
          complexed with cbx, cd, egl, na, pel, zn
          1. chain a [61487] picpiclink
          2. chain b [61488] picpiclink
        2. 1hzy picpic
          complexed with cbx, egl, na, pel, zn
          1. chain a [61468] picpiclink
          2. chain b [61469] picpiclink
        3. 1jgm picpic
          complexed with cd, egl, na, pel
          1. chain a [62953] picpiclink
          2. chain b [62954] picpiclink
        4. 1i0b picpic
          complexed with cbx, egl, mn, na, pel
          1. chain a [61483] picpiclink
          2. chain b [61484] picpiclink
        5. 1eyw picpic
          complexed with pel, ten, zn
          1. chain a [29057] picpiclink
        6. 1qw7 picpic
          complexed with co, ebp, lcx, na; mutant
          1. chain a [111660] picpiclink
          2. chain b [111661] picpiclink
        7. 1psc picpic
          complexed with cbx, cd, ebp
          1. chain a [29058] picpiclink
          2. chain b [29059] picpiclink
        8. 1ez2 picpic
          complexed with dii, zn
          1. chain a [29060] picpiclink
          2. chain b [29061] picpiclink
        9. 1dpm picpic
          complexed with cbx, ebp, zn
          1. chain a [29062] picpiclink
          2. chain b [29063] picpiclink
        10. 1pta picpic
          1. chain a [29064] picpiclink
      2. Flavobacterium sp. atcc 27551 [TaxId: 74567] [102087] (2)
        identical sequence to the Pseudomonas diminuta PTE
        1. 1p6b picpic
          complexed with ebp, efs, lcx, zn; mutant
          1. chain a [94163] picpiclink
          2. chain b [94164] picpiclink
        2. 1p6c picpic
          complexed with dii, ebp, lcx, zn; mutant
          1. chain a [94165] picpiclink
          2. chain b [94166] picpiclink
      3. Agrobacterium tumefaciens [TaxId: 358] [141815] (3)
        SQ Q93LD7 32-360
        1. 2d2j picpic
          automatically matched to 2D2G A:33-361
          complexed with co, co2, edo; mutant
          1. region a:33-361 [131175] picpiclink
        2. 2d2g picpic
          complexed with co, co2, dzz; mutant
          1. region a:33-361 [131173] picpiclink
        3. 2d2h picpic
          automatically matched to 2D2G A:33-361
          complexed with co, co2, tzz; mutant
          1. region a:33-361 [131174] picpiclink
    2. Phosphotriesterase homology protein [51567]
      1. Escherichia coli [TaxId: 562] [51568] (1)
        1. 1bf6 picpic
          complexed with gol, mpd, so4, zn
          1. chain a [29065] picpiclink
          2. chain b [29066] picpiclink
  12. Renal dipeptidase [75079] (1)
    1. Renal dipeptidase [75080]
      1. Human (Homo sapiens) [TaxId: 9606] [75081] (2)
        1. 1itu picpic
          complexed with cil, nag, zn
          1. chain a [71423] picpiclink
          2. chain b [71424] picpiclink
        2. 1itq picpic
          complexed with nag, zn
          1. chain a [71421] picpiclink
          2. chain b [71422] picpiclink
  13. Uronate isomerase-like [75082] (2)
    contains all-alpha subdomain inserted after the first strand
    1. Uronate isomerase TM0064 [75083]
      1. Thermotoga maritima [TaxId: 2336] [75084] (1)
        1. 1j5s picpic
          structural genomics
          1. chain a [71580] picpiclink
          2. chain b [71581] picpiclink
          3. chain c [71582] picpiclink
    2. Uncharacterized protein BH0493 [159395]
      1. Bacillus halodurans [TaxId: 86665] [159396] (13)
        SQ Q9KFI6 1-423
        1. 2qee picpic
          automatically matched to 2PNK A:1-423
          complexed with cl, mg, zn
          1. region c:2-416 [150677] picpiclink
        2. 2qee picpic
          automatically matched to 2PNK A:1-423
          complexed with cl, mg, zn
          1. region e:2-423 [150678] picpiclink
        3. 2qee picpic
          automatically matched to 2PNK A:1-423
          complexed with cl, mg, zn
          1. region l:2-417 [150679] picpiclink
        4. 2pnk picpic
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region a:1-423 [149674] picpiclink
        5. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region b:1-423 [149675] picpiclink
        6. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region c:1-420 [149676] picpiclink
        7. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region e:3-420 [149677] picpiclink
        8. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region g:1-423 [149678] picpiclink
        9. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region h:1-421 [149679] picpiclink
        10. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region i:4-423 [149680] picpiclink
        11. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region j:1-420 [149681] picpiclink
        12. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region k:1-423 [149682] picpiclink
        13. 2pnk picpic
          automatically matched to 2PNK A:1-423
          complexed with act, cl, fmt, gol, mpd, na, po4, unl
          1. region l:2-423 [149683] picpiclink
  14. Adenine deaminase-like [141816] (1)
    1. Putative adenine deaminase EF0837 [141817]
      1. Enterococcus faecalis [TaxId: 1351] [141818] (1)
        SQ Q837K0 53-319
        1. 2ics picpicxref
          complexed with ade, lcx, zn
          1. region a:55-321 [137242] picpiclink
  15. PP1699/LP2961-like [141819] (5)
    Pfam 04909; Amidohydrolase; stand-alone domain
    1. Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 [141820]
      1. Pseudomonas putida [TaxId: 303] [141821] (2)
        SQ Q88M75 10-280
        1. 2ffi picpic
          complexed with po4
          1. region a:10-280 [133385] picpiclink
        2. 2ffi picpic
          automatically matched to 2FFI A:10-280
          complexed with po4
          1. region b:10-280 [133386] picpiclink
    2. Thermophilic reversible gamma-resorcylate decarboxylase [141822]
      1. Rhizobium sp. MTP-10005 [TaxId: 267998] [141823] (12)
        SQ Q60GU1 1-325
        1. 2dvt picpic
          complexed with zn
          1. region a:1-325 [131793] picpiclink
        2. 2dvt picpic
          automatically matched to 2DVT A:1-325
          complexed with zn
          1. region b:1-324 [131794] picpiclink
        3. 2dvt picpic
          automatically matched to 2DVT A:1-325
          complexed with zn
          1. region c:1-325 [131795] picpiclink
        4. 2dvt picpic
          automatically matched to 2DVT A:1-325
          complexed with zn
          1. region d:1-324 [131796] picpiclink
        5. 2dvx picpic
          automatically matched to 2DVT A:1-325
          complexed with 23a, zn
          1. region a:1-325 [131801] picpiclink
        6. 2dvx picpic
          automatically matched to 2DVT A:1-325
          complexed with 23a, zn
          1. region b:1-324 [131802] picpiclink
        7. 2dvx picpic
          automatically matched to 2DVT A:1-325
          complexed with 23a, zn
          1. region c:1-325 [131803] picpiclink
        8. 2dvx picpic
          automatically matched to 2DVT A:1-325
          complexed with 23a, zn
          1. region d:1-324 [131804] picpiclink
        9. 2dvu picpic
          automatically matched to 2DVT A:1-325
          complexed with gre, zn
          1. region a:1-325 [131797] picpiclink
        10. 2dvu picpic
          automatically matched to 2DVT A:1-325
          complexed with gre, zn
          1. region b:1-324 [131798] picpiclink
        11. 2dvu picpic
          automatically matched to 2DVT A:1-325
          complexed with gre, zn
          1. region c:1-325 [131799] picpiclink
        12. 2dvu picpic
          automatically matched to 2DVT A:1-325
          complexed with gre, zn
          1. region d:1-324 [131800] picpiclink
    3. 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD [141824]
      1. Pseudomonas fluorescens [TaxId: 294] [141825] (4)
        SQ Q83V25 3-333
        1. 2hbv picpic
          complexed with mg, zn
          1. region a:3-333 [136320] picpiclink
        2. 2hbv picpic
          automatically matched to 2HBV A:3-333
          complexed with mg, zn
          1. region b:4-333 [136321] picpiclink
        3. 2hbx picpic
          automatically matched to 2HBV A:3-333
          complexed with co
          1. region a:3-333 [136322] picpiclink
        4. 2hbx picpic
          automatically matched to 2HBV A:3-333
          complexed with co
          1. region b:3-333 [136323] picpiclink
    4. 4-oxalomesaconate hydratase LigJ [141826]
      1. Rhodopseudomonas palustris [TaxId: 1076] [141827] (2)
        SQ Q6N0R4 1-342
        1. 2gwg picpic
          complexed with zn
          1. region a:1-342 [135805] picpiclink
        2. 2gwg picpic
          automatically matched to 2GWG A:1-342
          complexed with zn
          1. region b:1-342 [135806] picpiclink
    5. Putative amidohydrolase LP2961 [141828]
      1. Lactobacillus plantarum [TaxId: 1590] [141829] (2)
        SQ Q88TJ2 2-307
        1. 2f6k picpic
          complexed with mn
          1. region a:2-307 [133047] picpiclink
        2. 2f6k picpic
          automatically matched to 2F6K A:2-307
          complexed with mn
          1. region b:2-307 [133048] picpiclink
  16. DR0824-like [159397] (1)
    1. Hypothetical protein DR0824 [159398]
      predicted isoguanine deaminase/xanthine hydrolase
      1. Deinococcus radiodurans [TaxId: 1299] [159399] (1)
        SQ Q9RW45 91-398
        1. 2imr picpicxref
          complexed with zn
          1. region a:91-398 [147735] picpiclink
  17. Imidazolonepropionase-like [159400] (4)
    1. Uncharacterized protein BL1453 [159401]
      Possible prolidase
      1. Bifidobacterium longum [TaxId: 216816] [159402] (1)
        SQ Q8G4D5 69-392
        1. 2p9b picpicxref
          1. region a:71-394 [149334] picpiclink
    2. Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 [159403]
      1. Environmental samples [159404] (2)
        marine metagenome
        1. 2q09 picpicxref
          automatically matched to 2OOF A:66-366
          complexed with di6, fe
          1. region a:66-366 [149985] picpiclink
        2. 2oof picpicxref
          complexed with fe
          1. region a:66-366 [148925] picpiclink
    3. Imidazolonepropionase [159405]
      1. Bacillus subtilis [TaxId: 1423] [159406] (4)
        SQ P42084 74-373
        1. 2bb0 picpicxrefxref
          complexed with act, zn
          1. region a:74-373 [146130] picpiclink
        2. 2bb0 picpicxrefxref
          automatically matched to 2BB0 A:74-373
          complexed with act, zn
          1. region b:74-373 [146132] picpiclink
        3. 2g3f picpicxrefxref
          automatically matched to 2BB0 A:74-373
          complexed with izc, zn
          1. region a:74-373 [147074] picpiclink
        4. 2g3f picpicxrefxref
          automatically matched to 2BB0 A:74-373
          complexed with izc, zn
          1. region b:74-373 [147076] picpiclink
      2. Agrobacterium tumefaciens [TaxId: 358] [159407] (4)
        SQ Q8U8Z6 78-378
        1. 2puz picpicxrefxref
          complexed with cl, fe, mg, nig
          1. region a:80-380 [149874] picpiclink
        2. 2puz picpicxrefxref
          automatically matched to 2PUZ A:80-380
          complexed with cl, fe, mg, nig
          1. region b:80-380 [149876] picpiclink
        3. 2gok picpicxrefxref
          complexed with cl, fe, gol, mg
          1. region a:80-380 [147146] picpiclink
        4. 2gok picpicxrefxref
          automatically matched to 2GOK A:80-380
          complexed with cl, fe, gol, mg
          1. region b:80-380 [147148] picpiclink
  18. Zn-dependent arginine carboxypeptidase-like [159408] (3)
    1. Xaa-Pro dipeptidase [159409]
      1. Alteromonas macleodii [TaxId: 28108] [159410] (2)
        1. 2qs8 picpicxrefxref
          complexed with met, mg
          1. region a:64-373 [151312] picpiclink
        2. 2qs8 picpicxrefxref
          automatically matched to 2QS8 A:64-373
          complexed with met, mg
          1. region b:64-373 [151314] picpiclink
    2. Zn-dependent arginine carboxypeptidase [159411]
      1. Unidentified organism [TaxId: 32644] [159412] (16)
        1. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with arg, gol, mg
          1. region a:57-359 [155164] picpiclink
        2. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region b:57-359 [155166] picpiclink
        3. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region c:57-359 [155168] picpiclink
        4. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region d:57-359 [155170] picpiclink
        5. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region e:57-359 [155172] picpiclink
        6. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region f:57-359 [155174] picpiclink
        7. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region g:57-359 [155176] picpiclink
        8. 3be7 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, mg
          1. region h:57-359 [155178] picpiclink
        9. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region a:57-359 [157867] picpiclink
        10. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region b:57-359 [157869] picpiclink
        11. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region c:57-359 [157871] picpiclink
        12. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region d:57-359 [157873] picpiclink
        13. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region e:57-359 [157875] picpiclink
        14. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region f:57-359 [157877] picpiclink
        15. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region g:57-359 [157879] picpiclink
        16. 3dug picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3BE7 A:57-359
          complexed with arg, gol, zn
          1. region h:57-359 [157881] picpiclink
    3. Uncharacterized protein EAJ56179 [159413]
      1. Unidentified organism [TaxId: 32644] [159414] (8)
        94% identity to the Burkholderia phytofirmans ortholog Bphyt_2089 (SQ B2T4I1)
        1. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. region a:58-368 [151699] picpiclink
        2. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region b:58-368 [151701] picpiclink
        3. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region c:58-368 [151703] picpiclink
        4. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region d:58-368 [151705] picpiclink
        5. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region e:58-368 [151707] picpiclink
        6. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region f:58-368 [151709] picpiclink
        7. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region g:58-368 [151711] picpiclink
        8. 2r8c picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2R8C A:58-368
          complexed with zn
          1. region h:58-368 [151713] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk