Superfamily: PLP-binding barrel

circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
uperfamily

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: TIM beta/alpha-barrel [51350]
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites
4. Superfamily: PLP-binding barrel [51419]
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
   uperfamily

Families:

1. Alanine racemase-like, N-terminal domain [51420] (9)
   1. Alanine racemase [51421]
      1. Bacillus stearothermophilus [TaxId: 1422] [51422] (8)
      2. Pseudomonas aeruginosa [TaxId: 287] [110345] (1)
         SQ Q9HTQ2
      3. Streptomyces lavendulae [TaxId: 1914] [110346] (3)
         SQ Q65YW7
   2. Eukaryotic ornithine decarboxylase [51423]
      1. Human (Homo sapiens) [TaxId: 9606] [51424] (1)
      2. Mouse (Mus musculus) [TaxId: 10090] [51425] (1)
      3. Trypanosoma brucei [TaxId: 5691] [51426] (5)
         SQ P07805
   3. Diaminopimelate decarboxylase LysA [89457]
      most similar to eukaryotic ODC
      1. Mycobacterium tuberculosis [TaxId: 1773] [89458] (2)
      2. Escherichia coli [TaxId: 562] [102048] (2)
      3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110347] (2)
         SQ Q58497
2. "Hypothetical" protein ybl036c [51427] (1)
   1. "Hypothetical" protein ybl036c [51428]
      structure from BNL's human proteome project
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [51429] (2)

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk