Structural Classification of Proteins
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Family: Alanine racemase-like, N-terminal domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: PLP-binding barrel [51419]
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
    link to SUPERFAMILY database - Superfamily
  5. Family: Alanine racemase-like, N-terminal domain [51420]

Protein Domains:

  1. Alanine racemase [51421]
    1. Bacillus stearothermophilus [TaxId: 1422] [51422] (8)
      1. 1bd0 picpicxref
        complexed with in5
        1. region a:12-244 [28642] picpiclink
        2. region b:12-244 [28643] picpiclink
      2. 1sft picpicxref
        complexed with act, plp
        1. region a:12-244 [28644] picpiclink
        2. region b:12-244 [28645] picpiclink
      3. 1l6f picpicxref
        complexed with kcx, pdl
        1. region a:12-244 [73610] picpiclink
        2. region b:12-244 [73612] picpiclink
      4. 1l6g picpicxref
        complexed with kcx, pdd
        1. region a:12-244 [73614] picpiclink
        2. region b:12-244 [73616] picpiclink
      5. 2sfp picpicxref
        complexed with plp, ppi
        1. region a:12-244 [28646] picpiclink
        2. region b:12-244 [28647] picpiclink
      6. 1ftx picpicxref
        complexed with in5, kcx
        1. region a:12-244 [76192] picpiclink
        2. region b:12-244 [76194] picpiclink
      7. 1niu picpicxref
        complexed with scp
        1. region a:12-244 [91894] picpiclink
        2. region b:12-244 [91896] picpiclink
      8. 1epv picpicxref
        complexed with kcx, scp
        1. region a:12-244 [76147] picpiclink
        2. region b:12-244 [76149] picpiclink
    2. Pseudomonas aeruginosa [TaxId: 287] [110345] (1)
      SQ Q9HTQ2
      1. 1rcq picpicxref
        complexed with plp
        1. region a:8-233 [104883] picpiclink
    3. Streptomyces lavendulae [TaxId: 1914] [110346] (3)
      SQ Q65YW7
      1. 1vfs picpicxref
        complexed with cl, scp
        1. region a:13-249 [108585] picpiclink
        2. region b:1013-1249 [108587] picpiclink
      2. 1vfh picpicxref
        complexed with plp
        1. region a:13-249 [108575] picpiclink
      3. 1vft picpicxref
        complexed with cl, scp
        1. region a:13-249 [108589] picpiclink
        2. region b:1013-1249 [108591] picpiclink
  2. Eukaryotic ornithine decarboxylase [51423]
    1. Human (Homo sapiens) [TaxId: 9606] [51424] (1)
      1. 1d7k picpicxref
        1. region a:44-283 [28648] picpiclink
        2. region b:44-283 [28649] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [51425] (1)
      1. 7odc picpicxref
        complexed with plp; mutant
        1. region a:44-283 [28650] picpiclink
    3. Trypanosoma brucei [TaxId: 5691] [51426] (5)
      SQ P07805
      1. 2tod picpicxref
        1. region a:44-283 [28651] picpiclink
        2. region b:44-283 [28652] picpiclink
        3. region c:44-283 [28653] picpiclink
        4. region d:44-283 [28654] picpiclink
      2. 1f3t picpicxref
        complexed with plp, put
        1. region a:44-283 [28655] picpiclink
        2. region b:44-283 [28656] picpiclink
        3. region c:44-283 [28657] picpiclink
        4. region d:44-283 [28658] picpiclink
      3. 1szr picpicxref
        complexed with orx, plg, pxp; mutant
        1. region a:44-283 [112175] picpiclink
        2. region b:44-283 [112177] picpiclink
        3. region c:44-283 [112179] picpiclink
        4. region d:44-283 [112181] picpiclink
      4. 1njj picpicxref
        complexed with get, orx
        1. region a:44-283 [91906] picpiclink
        2. region b:44-283 [91908] picpiclink
        3. region c:44-283 [91910] picpiclink
        4. region d:44-283 [91912] picpiclink
      5. 1qu4 picpicxref
        1. region a:44-283 [28659] picpiclink
        2. region b:44-283 [28660] picpiclink
        3. region c:44-283 [28661] picpiclink
        4. region d:44-283 [28662] picpiclink
  3. Diaminopimelate decarboxylase LysA [89457]
    most similar to eukaryotic ODC
    1. Mycobacterium tuberculosis [TaxId: 1773] [89458] (2)
      1. 1hkv picpicxref
        complexed with lys, plp
        1. region a:46-310 [83560] picpiclink
        2. region b:46-310 [83562] picpiclink
      2. 1hkw picpicxref
        complexed with mse, so4
        1. region a:46-310 [83564] picpiclink
        2. region b:46-310 [83566] picpiclink
    2. Escherichia coli [TaxId: 562] [102048] (2)
      1. 1knw picpicxref
        complexed with li, mes, plp, sul
        1. region a:32-278 [90970] picpiclink
      2. 1ko0 picpicxref
        complexed with lys, plp
        1. region a:32-278 [90972] picpiclink
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110347] (2)
      SQ Q58497
      1. 1twi picpicxref
        Structural genomics target
        complexed with lys, mg, plp
        1. region a:50-313 [107400] picpiclink
        2. region b:50-313 [107402] picpiclink
        3. region c:50-313 [107404] picpiclink
        4. region d:50-313 [107406] picpiclink
      2. 1tuf picpicxref
        Structural genomics target
        complexed with az1
        1. region a:50-313 [107336] picpiclink
        2. region b:50-313 [107338] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk