Structural Classification of Proteins
Superfamily: Periplasmic binding protein-like II
Similar in architecture to the superfamily I but partly differs in topology
uperfamily
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a/b)
[51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold:
Periplasmic binding protein-like II
[53849]
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
Superfamily:
Periplasmic binding protein-like II
[53850]
Similar in architecture to the superfamily I but partly differs in topology
uperfamily
Families:
Phosphate binding protein-like
[53851] (65)
Oligo-peptide binding protein (OPPA) [53852]
contains an additional alpha+beta domain inserted in the N-terminal domain
Salmonella typhimurium
[TaxId: 90371]
[53853] (32)
Bacillus subtilis
[TaxId: 1423]
[142799] (1)
SQ
P42061
40-543
Thermotoga maritima
[TaxId: 2336]
[142800] (2)
SQ
Q9X0V0
23-557
TM1223
Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain [53854]
Escherichia coli
[TaxId: 562]
[53855] (5)
Lysine-,arginine-,ornithine-binding (LAO) protein [53856]
Salmonella typhimurium
[TaxId: 90371]
[53857] (5)
Sulphate-binding protein [53858]
Salmonella typhimurium
[TaxId: 90371]
[53859] (1)
Phosphate-binding protein [53860]
Escherichia coli
[TaxId: 562]
[53861] (13)
Mycobacterium tuberculosis
[TaxId: 1773]
[110747] (1)
SQ
P15712
D-maltodextrin-binding protein, MBP [53862]
contains a few additional helices in the C-terminal extension; homologous to thiaminase I
Escherichia coli
[TaxId: 562]
[53863] (47)
SQ
P02928
Alicyclobacillus acidocaldarius
[TaxId: 405212]
[102690] (3)
Archaeon Pyrococcus furiosus
[TaxId: 2261]
[53864] (1)
Archaeon Thermococcus litoralis
[TaxId: 2265]
[64191] (1)
trehalose maltose-binding protein
Escherichia coli K12 (Escherichia coli K-12)
[TaxId: 83333]
[159806] (1)
Thiaminase I [53865]
contains a few additional helices in the C-terminal extension; homologous to MBP
Paenibacillus thiaminolyticus
[TaxId: 49283]
[53866] (3)
Ferric-binding protein FbpA [53867]
Haemophilus influenzae
[TaxId: 727]
[53868] (5)
Mannheimia haemolytica
[TaxId: 75985]
[102691] (3)
SQ
Q9Z4N6
Neisseria gonorrhoeae
[TaxId: 485]
[53869] (4)
SQ
Q50964
23-331
Yersinia enterocolitica, YfuA
[TaxId: 630]
[117742] (1)
SQ
Q56925
28-338
Serratia marcescens, SfuA
[TaxId: 615]
[117743] (1)
SQ
P21408
32-338
Campylobacter jejuni
[TaxId: 197]
[117744] (1)
SQ
Q9PIV4
17-334
Bordetella pertussis
[TaxId: 520]
[117745] (3)
SQ
Q7VXW9
31-349
Dipeptide-binding protein [53870]
similar domain organization to oligopeptide-binding protein, OPPA
Escherichia coli
[TaxId: 562]
[53871] (2)
Hypothetical protein YliB [102692]
similar domain organization to oligo- and dipeptide-binding protein
Escherichia coli
[TaxId: 562]
[102693] (1)
Nickel-binding periplasmic protein NikA [102694]
similar domain organization to oligo- and dipeptide-binding protein
Escherichia coli
[TaxId: 562]
[102695] (10)
Histidine-binding protein [53872]
Escherichia coli
[TaxId: 562]
[53873] (1)
Salmonella typhimurium
[TaxId: 90371]
[53874] (1)
Spermidine/putrescine-binding protein PotD [53875]
Escherichia coli
[TaxId: 562]
[53876] (2)
Putrescine receptor (PotF) [53877]
Escherichia coli
[TaxId: 562]
[53878] (1)
Glutamine-binding protein [53879]
Escherichia coli
[TaxId: 562]
[53880] (2)
Glutamate receptor ligand binding core [53881]
Rat (Rattus norvegicus), GluR2
[TaxId: 10116]
[53882] (80)
Synechocystis sp., GluR0
[TaxId: 1143]
[64192] (3)
Rat (Rattus norvegicus), GluR6
[TaxId: 10116]
[142801] (14)
SQ
P42260
421-544,668-804! SQ
P42260
429-544,667-806
Rat (Rattus norvegicus), GluR5
[TaxId: 10116]
[142802] (13)
SQ
P22756
429-546,667-799! SQ
P22756
433-544,682-815
Putative GluR0 ligand binding core [102696]
Thermus thermophilus
[TaxId: 274]
[102697] (2)
N-methyl-D-aspartate receptor subunit 1 [89787]
Rat (Rattus norvegicus)
[TaxId: 10116]
[89788] (9)
Rat (Rattus norvegicus), subtype 2A
[TaxId: 10116]
[142803] (2)
SQ
Q00959
404-539,661-801
ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain [82559]
there is an additional C-terminal allosteric domain in some species
Mycobacterium tuberculosis
[TaxId: 1773]
[82560] (2)
Escherichia coli
[TaxId: 562]
[102698] (2)
Thermotoga maritima
[TaxId: 2336]
[102699] (3)
SQ
Q9X0D2
Lactococcus lactis
[TaxId: 1358]
[142804] (8)
SQ
Q02129
1-204
Thermus thermophilus
[TaxId: 274]
[142805] (1)
SQ
Q5SM15
1-206
Molybdate-binding protein, ModA [53883]
Escherichia coli
[TaxId: 562]
[53884] (2)
Azotobacter vinelandii
[TaxId: 354]
[53885] (1)
Archaeoglobus fulgidus
[TaxId: 2234]
[159807] (4)
SQ
O30142
32-342
Cofactor-binding fragment of LysR-type protein CysB [53886]
Klebsiella aerogenes
[TaxId: 28451]
[53887] (1)
Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain [64193]
Escherichia coli
[TaxId: 562]
[64194] (2)
LysR-type regulatory protein CbnR [89789]
Ralstonia eutropha
[TaxId: 106590]
[89790] (2)
Alginate-binding periplasmic protein AlgQ2 [69624]
Sphingomonas sp.
[TaxId: 28214]
[69625] (2)
Putative lipoprotein (NlpA family) [102700]
aka PG110, TpN32
Staphylococcus aureus
[TaxId: 1280]
[102701] (1)
Treponema pallidum
[TaxId: 160]
[117746] (1)
SQ
O07950
28-267
Glycine betaine-binding periplasmic protein ProX [102702]
Escherichia coli
[TaxId: 562]
[102703] (2)
LysR-type regulatory protein DntR [110748]
Burkholderia sp.
[TaxId: 36773]
[110749] (2)
SQ
Q7WT50
75-301
Osmoprotection protein ProX [110750]
functionally related to the bacterial ProX
Archaeoglobus fulgidus
[TaxId: 2234]
[110751] (4)
SQ
O29280
# AF0982
ABC transporter, periplasmic substrate-binding protein VCA0807 [117747]
Vibrio cholerae
[TaxId: 666]
[117748] (1)
SQ
Q9KLD9
26-274
Hypothetical protein TTHA1568 [142806]
member of
Pfam 02642
(DUF191)
Thermus thermophilus
[TaxId: 274]
[142807] (2)
SQ
Q5SI12
3-272
Alginate-binding periplasmic protein AlgQ1 [142808]
Sphingomonas sp.
[TaxId: 28214]
[142809] (3)
SQ
Q9KWT6
25-514
Hypothetical protein AF1704 [142810]
member of
Pfam 02642
(DUF191)
Archaeoglobus fulgidus
[TaxId: 2234]
[142811] (1)
SQ
O28569
2-261
Probable LysR-type transcriptional regulator PA0477 [142812]
Pseudomonas aeruginosa
[TaxId: 287]
[142813] (4)
SQ
Q9I641
92-303
Putative amino-acid transporter CjaA [142814]
Campylobacter jejuni
[TaxId: 197]
[142815] (2)
SQ
Q0P9S0
29-276
LysR-type regulatory protein Cbl [142816]
Escherichia coli
[TaxId: 562]
[142817] (4)
SQ
Q47083
88-307
Prephenate dehydratase [159808]
Staphylococcus aureus
[TaxId: 1280]
[159809] (2)
SQ
Q99SX2
1-184
Hypothetical protein SCo4506 [159810]
Streptomyces coelicolor
[TaxId: 1902]
[159811] (4)
SQ
Q9L0T8
6-282
Hypothetical protein YhfZ [159812]
Shigella flexneri
[TaxId: 623]
[159813] (1)
SQ
Q83JA6
1-228
Hypothetical protein DR0370 [159814]
Deinococcus radiodurans
[TaxId: 1299]
[159815] (8)
SQ
Q9RXE3
14-285
PstS-like phosphate-binding protein [159816]
Human (Homo sapiens)
[TaxId: 9606]
[159817] (1)
SQ
P85173
1-376
Transferrin
[53888] (11)
further duplication: composed of two two-domain lobes
Lactoferrin [53889]
Human (Homo sapiens)
[TaxId: 9606]
[53890] (23)
Cow (Bos taurus)
[TaxId: 9913]
[53891] (44)
Domestic water buffalo (Bubalus arnee bubalis)
[TaxId: 89462]
[53892] (2)
Goat (Capra hircus)
[TaxId: 9925]
[89791] (1)
Horse (Equus caballus)
[TaxId: 9796]
[53893] (8)
Arabian camel (Camelus dromedarius)
[TaxId: 9838]
[64195] (2)
Ovotransferrin [53894]
Duck (Anas platyrhynchos)
[TaxId: 8839]
[53895] (5)
Chicken (Gallus gallus)
[TaxId: 9031]
[53896] (11)
SQ
P02789
Transferrin [53897]
Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]
[53898] (6)
Human (Homo sapiens)
[TaxId: 9606]
[53899] (17)
Pig (Sus scrofa)
[TaxId: 9823]
[69626] (1)
PG0945 N-terminal domain-like
[159818] (1)
truncated to one domain; extra C-terminal region provides dimerisation interface
Uncharacterized protein PG0945 [159819]
putative ABC transporter, permease
Porphyromonas gingivalis
[TaxId: 837]
[159820] (1)
SQ
Q7MVU4
48-183
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk