Structural Classification of Proteins
home mail help root up expand collapse

Fold: Nucleotidyltransferase

core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Nucleotidyltransferase [81302]
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

Superfamilies:

  1. Nucleotidyltransferase [81301] (14)
    link to SUPERFAMILY database - Superfamily
    1. Catalytic subunit of bi-partite nucleotidyltransferase [102932] (3)
      insert X in the core is an alpha-helix; minimal nucleotidyltransferase fold
      1. Hypothetical protein HI0073 [102933]
        nucleotide binding subunit of the HI0073/HI0074 nucleotidyltransferase (see 1jog)
        1. Haemophilus influenzae [TaxId: 727] [102934] (1)
          1. 1no5 picpic
            structural genomics
            complexed with gol, na, so4, zn
            1. chain a [92014] picpiclink
            2. chain b [92015] picpiclink
      2. Unnamed putative nucleotidyltransferase [102935]
        1. Thermus thermophilus [TaxId: 274] [102936] (1)
          SQ P83814 # 100% identical to SQ Q72I47 (TTC1285)
          1. 1wot picpic
            structural genomics
            1. chain a [109470] picpiclink
      3. Putative nucleotidyltransferase AF0614 [143232]
        1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [143233] (2)
          SQ O29641 1-90
          1. 1ylq picpic
            complexed with so4
            1. region a:1-90 [123671] picpiclink
          2. 1ylq picpic
            automatically matched to 1YLQ A:1-90
            complexed with so4
            1. region b:1-90 [123672] picpiclink
    2. Kanamycin nucleotidyltransferase (KNTase), N-terminal domain [56708] (1)
      insert X in the core is a beta-strand ; mixed 4-stranded sheet, order: 1243
      1. Kanamycin nucleotidyltransferase (KNTase), N-terminal domain [56709]
        1. Staphylococcus aureus [TaxId: 1280] [56710] (2)
          1. 1kny picpicxref
            complexed with apc, kan, mg; mutant
            1. region a:1-125 [75897] picpiclink
            2. region b:1-125 [75899] picpiclink
          2. 1kan picpicxref
            CA-atoms only, mutant protein sequence
            1. region a:1-125 [75879] picpiclink
            2. region b:1-125 [75881] picpiclink
    3. Poly(A) polymerase, PAP, N-terminal domain [81589] (2)
      insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543
      1. Poly(A) polymerase, PAP, N-terminal domain [81588]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [81586] (7)
          1. 2q66 picpicxrefxref
            automatically matched to d1fa0b4
            complexed with atp, edo, mg; mutant
            1. region a:5-201 [150058] picpiclink
          2. 2hhp picpicxrefxref
            automatically matched to d1fa0b4
            complexed with flc, mg
            1. region a:4-201 [136504] picpiclink
          3. 3c66 picpicxrefxrefxrefxref
            automatically matched to d1fa0b4
            complexed with gol, mes
            1. region a:3-201 [155970] picpiclink
          4. 3c66 picpicxrefxrefxrefxref
            automatically matched to d1fa0b4
            complexed with gol, mes
            1. region b:3-201 [155973] picpiclink
          5. 2o1p picpicxrefxrefxrefxref
            automatically matched to d1fa0b4
            1. region a:4-201 [138876] picpiclink
          6. 2o1p picpicxrefxrefxrefxref
            automatically matched to d1fa0b4
            1. region b:4-201 [138879] picpiclink
          7. 1fa0 picpicxrefxref
            complexed with 3ad, 3at, mn, pop
            1. region a:3-201 [75838] picpiclink
            2. region b:2-201 [75840] picpiclink
        2. Cow (Bos taurus) [TaxId: 9913] [81587] (3)
          SQ P25500 18-497
          1. 1q79 picpicxrefxref
            complexed with 3at, gol, mn
            1. region a:19-214 [104549] picpiclink
          2. 1f5a picpicxrefxref
            complexed with 3at, 3po, mn; mutant
            1. region a:20-214 [75836] picpiclink
          3. 1q78 picpicxrefxref
            complexed with 3at, mg
            1. region a:19-214 [104546] picpiclink
    4. 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain [102937] (1)
      similar overall structure to the first two domains of poly(A) polymerase, PAP
      1. 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain [102938]
        1. Pig (Sus scrofa) [TaxId: 9823] [102939] (1)
          1. 1px5 picpicxref
            complexed with so4, ycm
            1. region a:1-200 [95278] picpiclink
            2. region b:1-200 [95280] picpiclink
    5. Archaeal tRNA CCA-adding enzyme catalytic domain [102940] (1)
      similar overall structure to poly(A) polymerase, PAP
      1. tRNA nucleotidyltransferase, N-terminal domain [102941]
        1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102942] (28)
          SQ O28126
          1. 1r89 picpicxrefxref
            complexed with cl, ctp, mg, mn, na
            1. region a:1-142 [97222] picpiclink
          2. 1uet picpicxrefxref
            complexed with act, ca, mg
            1. region a:2-142 [99273] picpiclink
          3. 1r8c picpicxrefxref
            complexed with mn, na, utp
            1. region a:1-142 [97231] picpiclink
          4. 1r8b picpicxrefxref
            complexed with atp, cl, mg, mn, na
            1. region a:1-142 [97228] picpiclink
          5. 1ueu picpicxrefxref
            complexed with act, ctp, mg
            1. region a:2-142 [99276] picpiclink
          6. 1tfw picpicxrefxref
            complexed with atp, mg
            1. region a:1-142 [106863] picpiclink
            2. region b:1-142 [106866] picpiclink
            3. region c:1-142 [106869] picpiclink
            4. region d:1-142 [106872] picpiclink
          7. 1r8a picpicxrefxref
            complexed with mn, na
            1. region a:1-142 [97225] picpiclink
          8. 2dra picpicxrefxref
            automatically matched to d1r89a2
            complexed with atp, mg, so4
            1. region a:1-142 [131667] picpiclink
          9. 2dvi picpicxrefxref
            automatically matched to d1r89a2
            complexed with ctp, mg, so4
            1. region a:3-142 [131791] picpiclink
          10. 2dr8 picpicxrefxref
            automatically matched to d1r89a2
            complexed with ctp, mg, so4
            1. region a:1-142 [131661] picpiclink
          11. 1uev picpicxrefxref
            complexed with atp, ca, mg
            1. region a:2-142 [99279] picpiclink
          12. 2zh6 picpicxrefxref
            automatically matched to d1r89a2
            complexed with atp, mg, so4
            1. region a:1-142 [154449] picpiclink
          13. 2zh2 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154437] picpiclink
          14. 2zh3 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154440] picpiclink
          15. 2zh4 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154443] picpiclink
          16. 2zh5 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154446] picpiclink
          17. 2zh8 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154455] picpiclink
          18. 2dr7 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [131658] picpiclink
          19. 2dr9 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [131664] picpiclink
          20. 2drb picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [131670] picpiclink
          21. 2zh1 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154434] picpiclink
          22. 2dr5 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [131655] picpiclink
          23. 2zh9 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:1-142 [154458] picpiclink
          24. 2zhb picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:2-142 [154464] picpiclink
          25. 2zh7 picpicxrefxref
            automatically matched to d1r89a2
            complexed with so4
            1. region a:2-142 [154452] picpiclink
          26. 2zha picpicxrefxref
            automatically matched to d1r89a2
            complexed with ctp, mg, so4
            1. region a:1-142 [154461] picpiclink
          27. 1tfy picpicxrefxref
            complexed with ctp, mg
            1. region a:1-142 [106875] picpiclink
            2. region b:1-142 [106878] picpiclink
            3. region c:1-142 [106881] picpiclink
            4. region d:1-142 [106884] picpiclink
          28. 1sz1 picpicxrefxref
            complexed with 1ma, 2mg, 5mc, 5mu, 7mg, h2u, m2g, omc, omg, psu, yyg
            1. region a:1-142 [106134] picpiclink
            2. region b:1-142 [106137] picpiclink
    6. DNA polymerase beta-like [81300] (5)
      insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
      1. DNA polymerase beta, catalytic (31 kD) fragment [81578]
        1. Human (Homo sapiens) [TaxId: 9606] [81574] (107)
          SQ P06746
          1. 2fmp picpicxrefxref
            automatically matched to d1bpxa4
            complexed with dct, doc, mg, na
            1. region a:149-335 [133788] picpiclink
          2. 1tv9 picpicxrefxref
            complexed with mg, na, po4
            1. region a:149-335 [112677] picpiclink
          3. 2fms picpicxrefxref
            automatically matched to d1bpxa4
            complexed with cl, dup, mg, na
            1. region a:149-335 [133794] picpiclink
          4. 2i9g picpicxrefxref
            automatically matched to d1bpxa4
            complexed with bpi, cl, doc, na
            1. region a:149-335 [137128] picpiclink
          5. 2iso picpicxrefxref
            automatically matched to d1bpxa4
            complexed with cl, doc, gff, mg, na
            1. region a:149-335 [137608] picpiclink
          6. 2fmq picpicxrefxref
            automatically matched to d1bpxa4
            complexed with dup, mg, na
            1. region a:149-335 [133791] picpiclink
          7. 2pxi picpicxrefxref
            automatically matched to d1bpxa4
            complexed with cl, doc, gfh, mg, na
            1. region a:149-335 [149913] picpiclink
          8. 2isp picpicxrefxref
            automatically matched to d1bpxa4
            complexed with cl, doc, ggh, mg, na
            1. region a:149-335 [137611] picpiclink
          9. 1zjm picpicxrefxref
            automatically matched to d1bpxa4
            complexed with na
            1. region a:149-335 [125155] picpiclink
          10. 3c2m picpicxrefxref
            automatically matched to d1bpxa4
            complexed with edo, f2a, mn, na
            1. region a:149-335 [155884] picpiclink
          11. 3c2k picpicxrefxref
            automatically matched to d1bpxa4
            complexed with cl, dup, mn, na
            1. region a:149-335 [155878] picpiclink
          12. 1tva picpicxrefxref
            complexed with mg, na, po4
            1. region a:149-335 [112680] picpiclink
          13. 2p66 picpicxrefxref
            automatically matched to d1bpxa4
            complexed with 3dr, na, po4
            1. region a:149-335 [139508] picpiclink
          14. 1zjn picpicxrefxref
            automatically matched to d1bpxa4
            complexed with dgt, mg, na
            1. region a:149-334 [125158] picpiclink
          15. 1mq3 picpicxrefxref
            complexed with 8og, dcp, doc, mg, na
            1. region a:149-335 [79399] picpiclink
          16. 3c2l picpicxrefxref
            automatically matched to d1bpxa4
            complexed with f2a, mn, na
            1. region a:149-335 [155881] picpiclink
          17. 1mq2 picpicxrefxref
            complexed with 2da, 8og, a, na
            1. region a:149-335 [79396] picpiclink
          18. 1bpy picpicxrefxref
            protein/DNA complex; complexed with dct, doc, mg, na
            1. region a:149-335 [75820] picpiclink
          19. 9icw picpicxrefxref
            protein/DNA complex; complexed with na, so4
            1. region a:149-335 [76130] picpiclink
          20. 9ick picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76106] picpiclink
          21. 9icx picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76132] picpiclink
          22. 9icl picpicxrefxref
            protein/DNA complex; complexed with mn, na
            1. region a:149-335 [76108] picpiclink
          23. 7ici picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76009] picpiclink
          24. 9icm picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76110] picpiclink
          25. 7ick picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76013] picpiclink
          26. 7icq picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76025] picpiclink
          27. 1zqp picpicxrefxref
            protein/DNA complex; complexed with k
            1. region a:149-335 [75966] picpiclink
          28. 7ice picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76001] picpiclink
          29. 8ico picpicxrefxref
            protein/DNA complex; complexed with azt, mn, na
            1. region a:149-335 [76063] picpiclink
          30. 9ico picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76114] picpiclink
          31. 1zqi picpicxrefxref
            protein/DNA complex; complexed with k
            1. region a:149-335 [75952] picpiclink
          32. 8ick picpicxrefxref
            protein/DNA complex; complexed with dtp, mn, na
            1. region a:149-335 [76055] picpiclink
          33. 7icn picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76019] picpiclink
          34. 9icv picpicxrefxref
            protein/DNA complex; complexed with dtp, na, zn
            1. region a:149-335 [76128] picpiclink
          35. 8icc picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76041] picpiclink
          36. 8ici picpicxrefxref
            protein/DNA complex; complexed with mg, na
            1. region a:149-335 [76051] picpiclink
          37. 7ich picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76007] picpiclink
          38. 7ict picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76031] picpiclink
          39. 7icm picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76017] picpiclink
          40. 9icn picpicxrefxref
            protein/DNA complex; complexed with dct, mg, na
            1. region a:149-335 [76112] picpiclink
          41. 7icg picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76005] picpiclink
          42. 8ics picpicxrefxref
            protein/DNA complex; complexed with dcp, mn, na
            1. region a:149-335 [76071] picpiclink
          43. 9icu picpicxrefxref
            protein/DNA complex; complexed with mn, na, ttp
            1. region a:149-335 [76126] picpiclink
          44. 8icn picpicxrefxref
            protein/DNA complex; complexed with atp, mn, na
            1. region a:149-335 [76061] picpiclink
          45. 9ics picpicxrefxref
            protein/DNA complex; complexed with dct, mn, na
            1. region a:149-335 [76122] picpiclink
          46. 9icq picpicxrefxref
            protein/DNA complex; complexed with dtp, mn, na
            1. region a:149-335 [76118] picpiclink
          47. 8icp picpicxrefxref
            protein/DNA complex; complexed with dtp, mn, na
            1. region a:149-335 [76065] picpiclink
          48. 9icr picpicxrefxref
            protein/DNA complex; complexed with dcp, mn, na
            1. region a:149-335 [76120] picpiclink
          49. 9ict picpicxrefxref
            protein/DNA complex; complexed with dgt, mn, na
            1. region a:149-335 [76124] picpiclink
          50. 8icq picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76067] picpiclink
          51. 7icr picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76027] picpiclink
          52. 7icp picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76023] picpiclink
          53. 9icg picpicxrefxref
            protein/DNA complex; complexed with dcp, na, zn
            1. region a:149-335 [76098] picpiclink
          54. 9ich picpicxrefxref
            protein/DNA complex; complexed with dgt, na, zn
            1. region a:149-335 [76100] picpiclink
          55. 9icj picpicxrefxref
            protein/DNA complex; complexed with na, so4
            1. region a:149-335 [76104] picpiclink
          56. 8icr picpicxrefxref
            protein/DNA complex; complexed with dtp, mn, na
            1. region a:149-335 [76069] picpiclink
          57. 1zqk picpicxrefxref
            protein/DNA complex; complexed with k
            1. region a:149-335 [75956] picpiclink
          58. 8icm picpicxrefxref
            protein/DNA complex; complexed with na, so4
            1. region a:149-335 [76059] picpiclink
          59. 1zqa picpicxrefxref
            protein/DNA complex; complexed with k
            1. region a:149-335 [75936] picpiclink
          60. 8icx picpicxrefxref
            protein/DNA complex; complexed with mn, na, ttp
            1. region a:149-335 [76081] picpiclink
          61. 8ica picpicxrefxref
            protein/DNA complex; complexed with ca, dtp, na
            1. region a:149-335 [76037] picpiclink
          62. 8icz picpicxrefxref
            protein/DNA complex; complexed with na, so4
            1. region a:149-335 [76085] picpiclink
          63. 7ics picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76029] picpiclink
          64. 1zqf picpicxrefxref
            protein/DNA complex; complexed with cs
            1. region a:149-335 [75946] picpiclink
          65. 9icf picpicxrefxref
            protein/DNA complex; complexed with dtp, na, zn
            1. region a:149-335 [76096] picpiclink
          66. 9ica picpicxrefxref
            protein/DNA complex; complexed with mn, stp
            1. region a:149-335 [76088] picpiclink
          67. 1zqb picpicxrefxref
            protein/DNA complex; complexed with ba
            1. region a:149-335 [75938] picpiclink
          68. 8icb picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76039] picpiclink
          69. 7icf picpicxrefxref
            protein/DNA complex; complexed with cd, na
            1. region a:149-335 [76003] picpiclink
          70. 7icl picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76015] picpiclink
          71. 9icc picpicxrefxref
            protein/DNA complex; complexed with cr, dtp, na
            1. region a:149-335 [76092] picpiclink
          72. 9icb picpicxrefxref
            protein/DNA complex; complexed with co, dtp, na
            1. region a:149-335 [76090] picpiclink
          73. 8icg picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76047] picpiclink
          74. 8icf picpicxrefxref
            protein/DNA complex; complexed with dtp, na
            1. region a:149-335 [76045] picpiclink
          75. 1zqg picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75948] picpiclink
          76. 1zqm picpicxrefxref
            protein/DNA complex; complexed with mn
            1. region a:149-335 [75960] picpiclink
          77. 8icl picpicxrefxref
            protein/DNA complex; complexed with dtp, na, ni
            1. region a:149-335 [76057] picpiclink
          78. 1zqo picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75964] picpiclink
          79. 8icu picpicxrefxref
            protein/DNA complex; complexed with dad, mn, na
            1. region a:149-335 [76075] picpiclink
          80. 9icy picpicxrefxref
            protein/DNA complex; complexed with na, so4
            1. region a:149-335 [76134] picpiclink
          81. 1zqn picpicxrefxref
            protein/DNA complex; complexed with ba
            1. region a:149-335 [75962] picpiclink
          82. 8icv picpicxrefxref
            protein/DNA complex; complexed with dgt, mn, na
            1. region a:149-335 [76077] picpiclink
          83. 8icy picpicxrefxref
            protein/DNA complex; complexed with mn, na, ttp
            1. region a:149-335 [76083] picpiclink
          84. 8ict picpicxrefxref
            protein/DNA complex; complexed with dcp, mn, na
            1. region a:149-335 [76073] picpiclink
          85. 1zqs picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75972] picpiclink
          86. 9icp picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76116] picpiclink
          87. 1zqc picpicxrefxref
            protein/DNA complex; complexed with ca
            1. region a:149-335 [75940] picpiclink
          88. 1bpx picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75818] picpiclink
          89. 7ico picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76021] picpiclink
          90. 9ici picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [76102] picpiclink
          91. 1bpz picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75822] picpiclink
          92. 7icu picpicxrefxref
            protein/DNA complex; complexed with cd, na
            1. region a:149-335 [76033] picpiclink
          93. 1zql picpicxrefxref
            protein/DNA complex; complexed with mn
            1. region a:149-335 [75958] picpiclink
          94. 8icj picpicxrefxref
            protein/DNA complex; complexed with na, ttp
            1. region a:149-335 [76053] picpiclink
          95. 8ich picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76049] picpiclink
          96. 8ice picpicxrefxref
            protein/DNA complex; complexed with cd, dtp, na
            1. region a:149-335 [76043] picpiclink
          97. 7icv picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76035] picpiclink
          98. 1zqq picpicxrefxref
            protein/DNA complex; complexed with mn, na
            1. region a:149-335 [75968] picpiclink
          99. 1zqd picpicxrefxref
            protein/DNA complex; complexed with ca
            1. region a:149-335 [75942] picpiclink
          100. 8icw picpicxrefxref
            protein/DNA complex; complexed with mn, na, ttp
            1. region a:149-335 [76079] picpiclink
          101. 7icj picpicxrefxref
            protein/DNA complex; complexed with cu, na
            1. region a:149-335 [76011] picpiclink
          102. 1zqt picpicxrefxref
            protein/DNA complex; complexed with na, zn
            1. region a:149-335 [75974] picpiclink
          103. 1zqe picpicxrefxref
            protein/DNA complex; complexed with cr
            1. region a:149-335 [75944] picpiclink
          104. 1zqr picpicxrefxref
            protein/DNA complex; complexed with na, ni
            1. region a:149-335 [75970] picpiclink
          105. 9ice picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [76094] picpiclink
          106. 1zqj picpicxrefxref
            protein/DNA complex; complexed with ca
            1. region a:149-335 [75954] picpiclink
          107. 1zqh picpicxrefxref
            protein/DNA complex; complexed with na
            1. region a:149-335 [75950] picpiclink
        2. Rat (Rattus norvegicus) [TaxId: 10116] [81576] (18)
          1. 2van picpicxref
            automatically matched to d1bpba2
            mutant
            1. region a:149-335 [152827] picpiclink
          2. 1jn3 picpicxref
            mutant
            1. region a:149-335 [75865] picpiclink
          3. 1rpl picpicxref
            1. region a:149-335 [75934] picpiclink
          4. 1zqw picpicxref
            1. region a:149-335 [75980] picpiclink
          5. 1zqy picpicxref
            1. region a:149-335 [75984] picpiclink
          6. 1huz picpicxrefxref
            complexed with cr, mdn
            1. region a:149-334 [75851] picpiclink
            2. region b:149-334 [75853] picpiclink
          7. 1bpb picpicxref
            1. region a:149-335 [75812] picpiclink
          8. 1huo picpicxrefxref
            complexed with cr, tte
            1. region a:149-334 [75847] picpiclink
            2. region b:149-334 [75849] picpiclink
          9. 1zqu picpicxref
            1. region a:149-335 [75976] picpiclink
          10. 1zqx picpicxref
            1. region a:149-335 [75982] picpiclink
          11. 2bpc picpicxref
            complexed with mn
            1. region a:149-335 [75990] picpiclink
          12. 1zqz picpicxref
            complexed with mn
            1. region a:149-335 [75986] picpiclink
          13. 1nom picpicxref
            complexed with mn
            1. region a:149-335 [75930] picpiclink
          14. 1zqv picpicxref
            complexed with ca
            1. region a:149-335 [75978] picpiclink
          15. 2bpf picpicxrefxref
            protein/DNA complex; complexed with dct, mg
            1. region a:149-335 [75992] picpiclink
          16. 2bpg picpicxrefxref
            protein/DNA complex; complexed with dct, mg
            1. region a:149-335 [75994] picpiclink
            2. region b:149-335 [75996] picpiclink
          17. 1bpd picpicxrefxref
            complexed with po4
            1. region a:149-335 [75814] picpiclink
          18. 1bpe picpicxrefxref
            complexed with dtp
            1. region a:149-335 [75816] picpiclink
      2. Terminal deoxynucleotidyl transferase [81581]
        1. Mouse (Mus musculus) [TaxId: 10090] [81580] (3)
          1. 1jms picpicxrefxref
            complexed with mg, na
            1. region a:303-510 [75863] picpiclink
          2. 1kdh picpicxrefxref
            complexed with bro, mg, na
            1. region a:303-510 [75883] picpiclink
          3. 1kej picpicxrefxref
            complexed with co, dad, na
            1. region a:303-510 [75885] picpiclink
      3. DNA polymerase lambda [102943]
        1. Human (Homo sapiens) [TaxId: 9606] [102944] (24)
          1. 2bcq picpicxrefxref
            automatically matched to d1rzta3
            complexed with edo, mg, na, ppv
            1. region a:386-575 [128306] picpiclink
          2. 2bcr picpicxrefxref
            automatically matched to d1rzta3
            complexed with edo, mg, na, ppv
            1. region a:386-575 [128309] picpiclink
          3. 2pfn picpicxrefxref
            automatically matched to d1rzta3
            complexed with dup, mg, na; mutant
            1. region a:386-575 [139674] picpiclink
          4. 1xsn picpicxrefxref
            automatically matched to d1rzta3
            complexed with 2dt, d3t, edo, mg, na; mutant
            1. region a:386-575 [122284] picpiclink
          5. 2bcv picpicxrefxref
            automatically matched to d1rzta3
            complexed with mg, na, o2c, ttp
            1. region a:386-575 [128318] picpiclink
          6. 2pfo picpicxrefxref
            automatically matched to d1rzta3
            complexed with dup, edo, mg, mn, na; mutant
            1. region a:386-575 [139677] picpiclink
          7. 2pfp picpicxrefxref
            automatically matched to d1rzta3
            complexed with dcp, mg, na; mutant
            1. region a:386-575 [139680] picpiclink
          8. 1xsp picpicxrefxref
            automatically matched to d1rzta3
            complexed with na, ppv; mutant
            1. region a:386-575 [122287] picpiclink
          9. 3c5g picpicxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with 2dt, d3t, edo, mg, na; mutant
            1. region a:386-575 [155945] picpiclink
          10. 3c5g picpicxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with 2dt, d3t, edo, mg, na; mutant
            1. region b:386-575 [155948] picpiclink
          11. 2bcs picpicxrefxref
            automatically matched to d1rzta3
            complexed with mg, na, ppv
            1. region a:386-575 [128312] picpiclink
          12. 1rzt picpicxrefxref
            complexed with edo, na; mutant
            1. region a:386-575 [98226] picpiclink
            2. region e:386-575 [98229] picpiclink
            3. region i:386-575 [98232] picpiclink
            4. region m:386-575 [98235] picpiclink
          13. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, mg, na
            1. region a:386-575 [122272] picpiclink
          14. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, mg, na
            1. region e:386-575 [122275] picpiclink
          15. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, mg, na
            1. region i:386-575 [122278] picpiclink
          16. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, mg, na
            1. region m:386-575 [122281] picpiclink
          17. 2bcu picpicxrefxref
            automatically matched to d1rzta3
            complexed with na, ppv
            1. region a:386-575 [128315] picpiclink
          18. 3c5f picpicxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with na; mutant
            1. region a:386-575 [155939] picpiclink
          19. 3c5f picpicxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with na; mutant
            1. region b:386-575 [155942] picpiclink
          20. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, cl, edo, mg, na
            1. region a:386-575 [135815] picpiclink
          21. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, cl, edo, mg, na
            1. region e:386-575 [135818] picpiclink
          22. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, cl, edo, mg, na
            1. region i:386-575 [135821] picpiclink
          23. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1rzta3
            complexed with cac, cl, edo, mg, na
            1. region m:386-575 [135824] picpiclink
          24. 2pfq picpicxrefxref
            automatically matched to d1rzta3
            complexed with dcp, mg, mn, na, ppv; mutant
            1. region a:386-575 [139683] picpiclink
      4. DNA polymerase X [69885]
        1. African swine fever virus [TaxId: 10497] [69886] (2)
          1. 1jqr picpic
            1. chain a [67107] picpiclink
          2. 1jaj picpic
            1. chain a [66471] picpiclink
    7. Poly A polymerase head domain-like [82661] (3)
      overlaps with the N-terminal part of Pfam 01743; this family is distinct from eukaryotic PAPs
      insert X in the core is an alpha-beta(2) unit; contains two extra C-terminal strands; mixed 7-stranded sheet, order: 7612543
      1. tRNA CCA-adding enzyme, head domain [82662]
        1. Bacillus stearothermophilus [TaxId: 1422] [82663] (3)
          1. 1miw picpicxref
            complexed with atp, mg, mse
            1. region a:1-139 [79163] picpiclink
            2. region b:1-139 [79165] picpiclink
          2. 1miv picpicxref
            complexed with mg, mse
            1. region a:1-139 [79159] picpiclink
            2. region b:1-139 [79161] picpiclink
          3. 1miy picpicxref
            complexed with ctp, mg
            1. region a:1-139 [79169] picpiclink
            2. region b:1-139 [79171] picpiclink
        2. Human (Homo sapiens), mitochondrial [TaxId: 9606] [89924] (1)
          1. 1ou5 picpicxref
            1. region a:-1-150 [87446] picpiclink
            2. region b:-1-150 [87448] picpiclink
      2. Poly A polymerase PcnB [110931]
        1. Aquifex aeolicus [TaxId: 63363] [110932] (1)
          SQ O66728 443-824
          1. 1vfg picpicxref
            complexed with apc
            1. region a:1-136 [108571] picpiclink
            2. region b:1-136 [108573] picpiclink
    8. RelA/SpoT domain [102945] (2)
      Pfam 04607; ppGpp-synthetase
      1. Stringent response-like protein RelA domain 2 [102946]
        1. Streptococcus equisimilis [TaxId: 119602] [102947] (1)
          1. 1vj7 picpicxref
            complexed with gdp, gpx, mn
            1. region a:197-371 [100802] picpiclink
            2. region b:197-370 [100804] picpiclink
      2. Putative GTP pyrophosphokinase SP1097 [143234]
        1. Streptococcus pneumoniae [TaxId: 1313] [143235] (2)
          SQ Q97QV1 1-203
          1. 2be3 picpic
            complexed with cl, gol, pg4
            1. region a:1-203 [128349] picpiclink
          2. 2be3 picpic
            automatically matched to 2BE3 A:1-203
            complexed with cl, gol, pg4
            1. region b:2-201 [128350] picpiclink
    9. GlnE-like domain [110933] (1)
      Pfam 03710; Pfam coverage excludes the extra N-terminal subdomain but includes a short segment of the next domain 2
      1. Glutamine synthase adenylyltransferase GlnE, N-terminal domain [110934]
        includes extra N-terminal all-alpha subdomain (2-61) structurally similar to the PABP domain (scop_fa 63571)
        1. Escherichia coli [TaxId: 562] [110935] (1)
          SQ P30870 1-437
          1. 1v4a picpicxref
            1. region a:2-286 [108351] picpiclink
    10. RNA editing terminal uridyl transferase 2, RET2, catalytic domain [143236] (1)
      contains insert domain of a ferredoxin-like fold
      1. RNA editing terminal uridyl transferase 2, TUTase 2, RET2 [143237]
        1. Trypanosoma brucei [TaxId: 5691] [143238] (1)
          SQ Q86MV5 30-288
          1. 2b4v picpicxref
            complexed with k; mutant
            1. region a:30-288 [127865] picpiclink
    11. TM1012-like [143239] (1)
      insert X in the core is an alpha-beta(2) unit; contains extra C-terminal structures; mixed 7-stranded sheet, order: 6712543;
      1. Hypothetical protein TM1012 [143240]
        1. Thermotoga maritima [TaxId: 2336] [143241] (2)
          SQ Q9X0A5 1-157! SQ Q9X0A5 2-157
          1. 2fcl picpic
            complexed with edo, mly, unl
            1. region a:1-157 [133273] picpiclink
          2. 2ewr picpic
            complexed with edo
            1. region a:2-157 [132493] picpiclink
    12. Iojap/YbeB-like [160252] (2)
      Pfam 02410, probably has evolved a different function; closer relationship to the GrpB-like family
      1. Hypothetical protein CV0518 [160253]
        1. Chromobacterium violaceum [TaxId: 536] [160254] (2)
          SQ Q7P0P8 1-120
          1. 2id1 picpic
            complexed with iod
            1. region a:1-120 [147622] picpiclink
          2. 2id1 picpic
            automatically matched to 2ID1 A:1-120
            complexed with iod
            1. region b:1-120 [147623] picpiclink
      2. Uncharacterized protein BH1328 [160255]
        1. Bacillus halodurans [TaxId: 86665] [160256] (2)
          SQ Q9KD89 2-114
          1. 2o5a picpic
            complexed with mn, so4
            1. region a:2-114 [148593] picpiclink
          2. 2o5a picpic
            automatically matched to 2O5A A:2-114
            complexed with mn, so4
            1. region b:3-112 [148594] picpiclink
    13. AadK N-terminal domain-like [160257] (1)
      N-terminal part of Pfam 04439; Streptomycin adenylyltransferase; insert X is alpha-beta(2) unit; overall domain architecture is similar to Kanamycin nucleotidyltransferase
      1. Aminoglycoside 6-adenylyltransferase AadK [160258]
        1. Bacillus subtilis [TaxId: 1423] [160259] (1)
          SQ P17585 1-135
          1. 2pbe picpicxref
            1. region a:1-135 [149356] picpiclink
    14. GrpB-like [160260] (1)
      Pfam 04229, different set of active-site residues
      1. Hypothetical protein GrpB [160261]
        1. Enterococcus faecalis [TaxId: 1351] [160262] (1)
          SQ Q837C3 4-170
          1. 2nrk picpic
            1. region a:4-170 [148379] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk