Structural Classification of Proteins

Superfamily: Nucleotidyltransferase

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Nucleotidyltransferase [81302]
core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
Superfamily: Nucleotidyltransferase [81301]
uperfamily

Families:

Catalytic subunit of bi-partite nucleotidyltransferase [102932] (3)
insert X in the core is an alpha-helix; minimal nucleotidyltransferase fold
1. Hypothetical protein HI0073 [102933]
  nucleotide binding subunit of the HI0073/HI0074 nucleotidyltransferase (see 1jog)
  1. Haemophilus influenzae [TaxId: 727] [102934] (1)
    1. 1no5
      structural genomics
      complexed with gol, na, so4, zn
      1. chain a [92014]
      2. chain b [92015]
2. Unnamed putative nucleotidyltransferase [102935]
  1. Thermus thermophilus [TaxId: 274] [102936] (1)
    SQ P83814 # 100% identical to SQ Q72I47 (TTC1285)
    1. 1wot
      structural genomics
      1. chain a [109470]
3. Putative nucleotidyltransferase AF0614 [143232]
  1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [143233] (2)
    SQ O29641 1-90
    1. 1ylq
      complexed with so4
      1. region a:1-90 [123671]
    2. 1ylq
      automatically matched to 1YLQ A:1-90
      complexed with so4
      1. region b:1-90 [123672]
Kanamycin nucleotidyltransferase (KNTase), N-terminal domain [56708] (1)
insert X in the core is a beta-strand ; mixed 4-stranded sheet, order: 1243
1. Kanamycin nucleotidyltransferase (KNTase), N-terminal domain [56709]
  1. Staphylococcus aureus [TaxId: 1280] [56710] (2)
    1. 1kny
      complexed with apc, kan, mg; mutant
      1. region a:1-125 [75897]
      2. region b:1-125 [75899]
    2. 1kan
      CA-atoms only, mutant protein sequence
      1. region a:1-125 [75879]
      2. region b:1-125 [75881]
Poly(A) polymerase, PAP, N-terminal domain [81589] (2)
insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543
1. Poly(A) polymerase, PAP, N-terminal domain [81588]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [81586] (7)
    1. 2q66
      automatically matched to d1fa0b4
      complexed with atp, edo, mg; mutant
      1. region a:5-201 [150058]
    2. 2hhp
      automatically matched to d1fa0b4
      complexed with flc, mg
      1. region a:4-201 [136504]
    3. 3c66
      automatically matched to d1fa0b4
      complexed with gol, mes
      1. region a:3-201 [155970]
    4. 3c66
      automatically matched to d1fa0b4
      complexed with gol, mes
      1. region b:3-201 [155973]
    5. 2o1p
      automatically matched to d1fa0b4
      1. region a:4-201 [138876]
    6. 2o1p
      automatically matched to d1fa0b4
      1. region b:4-201 [138879]
    7. 1fa0
      complexed with 3ad, 3at, mn, pop
      1. region a:3-201 [75838]
      2. region b:2-201 [75840]
  2. Cow (Bos taurus) [TaxId: 9913] [81587] (3)
    SQ P25500 18-497
    1. 1q79
      complexed with 3at, gol, mn
      1. region a:19-214 [104549]
    2. 1f5a
      complexed with 3at, 3po, mn; mutant
      1. region a:20-214 [75836]
    3. 1q78
      complexed with 3at, mg
      1. region a:19-214 [104546]
2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain [102937] (1)
similar overall structure to the first two domains of poly(A) polymerase, PAP
1. 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain [102938]
  1. Pig (Sus scrofa) [TaxId: 9823] [102939] (1)
    1. 1px5
      complexed with so4, ycm
      1. region a:1-200 [95278]
      2. region b:1-200 [95280]
Archaeal tRNA CCA-adding enzyme catalytic domain [102940] (1)
similar overall structure to poly(A) polymerase, PAP
1. tRNA nucleotidyltransferase, N-terminal domain [102941]
  1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102942] (28)
    SQ O28126
    1. 1r89
      complexed with cl, ctp, mg, mn, na
      1. region a:1-142 [97222]
    2. 1uet
      complexed with act, ca, mg
      1. region a:2-142 [99273]
    3. 1r8c
      complexed with mn, na, utp
      1. region a:1-142 [97231]
    4. 1r8b
      complexed with atp, cl, mg, mn, na
      1. region a:1-142 [97228]
    5. 1ueu
      complexed with act, ctp, mg
      1. region a:2-142 [99276]
    6. 1tfw
      complexed with atp, mg
      1. region a:1-142 [106863]
      2. region b:1-142 [106866]
      3. region c:1-142 [106869]
      4. region d:1-142 [106872]
    7. 1r8a
      complexed with mn, na
      1. region a:1-142 [97225]
    8. 2dra
      automatically matched to d1r89a2
      complexed with atp, mg, so4
      1. region a:1-142 [131667]
    9. 2dvi
      automatically matched to d1r89a2
      complexed with ctp, mg, so4
      1. region a:3-142 [131791]
    10. 2dr8
      automatically matched to d1r89a2
      complexed with ctp, mg, so4
      1. region a:1-142 [131661]
    11. 1uev
      complexed with atp, ca, mg
      1. region a:2-142 [99279]
    12. 2zh6
      automatically matched to d1r89a2
      complexed with atp, mg, so4
      1. region a:1-142 [154449]
    13. 2zh2
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154437]
    14. 2zh3
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154440]
    15. 2zh4
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154443]
    16. 2zh5
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154446]
    17. 2zh8
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154455]
    18. 2dr7
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [131658]
    19. 2dr9
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [131664]
    20. 2drb
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [131670]
    21. 2zh1
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154434]
    22. 2dr5
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [131655]
    23. 2zh9
      automatically matched to d1r89a2
      complexed with so4
      1. region a:1-142 [154458]
    24. 2zhb
      automatically matched to d1r89a2
      complexed with so4
      1. region a:2-142 [154464]
    25. 2zh7
      automatically matched to d1r89a2
      complexed with so4
      1. region a:2-142 [154452]
    26. 2zha
      automatically matched to d1r89a2
      complexed with ctp, mg, so4
      1. region a:1-142 [154461]
    27. 1tfy
      complexed with ctp, mg
      1. region a:1-142 [106875]
      2. region b:1-142 [106878]
      3. region c:1-142 [106881]
      4. region d:1-142 [106884]
    28. 1sz1
      complexed with 1ma, 2mg, 5mc, 5mu, 7mg, h2u, m2g, omc, omg, psu, yyg
      1. region a:1-142 [106134]
      2. region b:1-142 [106137]
DNA polymerase beta-like [81300] (5)
insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
1. DNA polymerase beta, catalytic (31 kD) fragment [81578]
  1. Human (Homo sapiens) [TaxId: 9606] [81574] (107)
    SQ P06746
    1. 2fmp
      automatically matched to d1bpxa4
      complexed with dct, doc, mg, na
      1. region a:149-335 [133788]
    2. 1tv9
      complexed with mg, na, po4
      1. region a:149-335 [112677]
    3. 2fms
      automatically matched to d1bpxa4
      complexed with cl, dup, mg, na
      1. region a:149-335 [133794]
    4. 2i9g
      automatically matched to d1bpxa4
      complexed with bpi, cl, doc, na
      1. region a:149-335 [137128]
    5. 2iso
      automatically matched to d1bpxa4
      complexed with cl, doc, gff, mg, na
      1. region a:149-335 [137608]
    6. 2fmq
      automatically matched to d1bpxa4
      complexed with dup, mg, na
      1. region a:149-335 [133791]
    7. 2pxi
      automatically matched to d1bpxa4
      complexed with cl, doc, gfh, mg, na
      1. region a:149-335 [149913]
    8. 2isp
      automatically matched to d1bpxa4
      complexed with cl, doc, ggh, mg, na
      1. region a:149-335 [137611]
    9. 1zjm
      automatically matched to d1bpxa4
      complexed with na
      1. region a:149-335 [125155]
    10. 3c2m
      automatically matched to d1bpxa4
      complexed with edo, f2a, mn, na
      1. region a:149-335 [155884]
    11. 3c2k
      automatically matched to d1bpxa4
      complexed with cl, dup, mn, na
      1. region a:149-335 [155878]
    12. 1tva
      complexed with mg, na, po4
      1. region a:149-335 [112680]
    13. 2p66
      automatically matched to d1bpxa4
      complexed with 3dr, na, po4
      1. region a:149-335 [139508]
    14. 1zjn
      automatically matched to d1bpxa4
      complexed with dgt, mg, na
      1. region a:149-334 [125158]
    15. 1mq3
      complexed with 8og, dcp, doc, mg, na
      1. region a:149-335 [79399]
    16. 3c2l
      automatically matched to d1bpxa4
      complexed with f2a, mn, na
      1. region a:149-335 [155881]
    17. 1mq2
      complexed with 2da, 8og, a, na
      1. region a:149-335 [79396]
    18. 1bpy
      protein/DNA complex; complexed with dct, doc, mg, na
      1. region a:149-335 [75820]
    19. 9icw
      protein/DNA complex; complexed with na, so4
      1. region a:149-335 [76130]
    20. 9ick
      protein/DNA complex; complexed with na
      1. region a:149-335 [76106]
    21. 9icx
      protein/DNA complex; complexed with na
      1. region a:149-335 [76132]
    22. 9icl
      protein/DNA complex; complexed with mn, na
      1. region a:149-335 [76108]
    23. 7ici
      protein/DNA complex; complexed with na
      1. region a:149-335 [76009]
    24. 9icm
      protein/DNA complex; complexed with na
      1. region a:149-335 [76110]
    25. 7ick
      protein/DNA complex; complexed with na
      1. region a:149-335 [76013]
    26. 7icq
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76025]
    27. 1zqp
      protein/DNA complex; complexed with k
      1. region a:149-335 [75966]
    28. 7ice
      protein/DNA complex; complexed with na
      1. region a:149-335 [76001]
    29. 8ico
      protein/DNA complex; complexed with azt, mn, na
      1. region a:149-335 [76063]
    30. 9ico
      protein/DNA complex; complexed with na
      1. region a:149-335 [76114]
    31. 1zqi
      protein/DNA complex; complexed with k
      1. region a:149-335 [75952]
    32. 8ick
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:149-335 [76055]
    33. 7icn
      protein/DNA complex; complexed with na
      1. region a:149-335 [76019]
    34. 9icv
      protein/DNA complex; complexed with dtp, na, zn
      1. region a:149-335 [76128]
    35. 8icc
      protein/DNA complex; complexed with na
      1. region a:149-335 [76041]
    36. 8ici
      protein/DNA complex; complexed with mg, na
      1. region a:149-335 [76051]
    37. 7ich
      protein/DNA complex; complexed with na
      1. region a:149-335 [76007]
    38. 7ict
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76031]
    39. 7icm
      protein/DNA complex; complexed with na
      1. region a:149-335 [76017]
    40. 9icn
      protein/DNA complex; complexed with dct, mg, na
      1. region a:149-335 [76112]
    41. 7icg
      protein/DNA complex; complexed with na
      1. region a:149-335 [76005]
    42. 8ics
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:149-335 [76071]
    43. 9icu
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:149-335 [76126]
    44. 8icn
      protein/DNA complex; complexed with atp, mn, na
      1. region a:149-335 [76061]
    45. 9ics
      protein/DNA complex; complexed with dct, mn, na
      1. region a:149-335 [76122]
    46. 9icq
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:149-335 [76118]
    47. 8icp
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:149-335 [76065]
    48. 9icr
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:149-335 [76120]
    49. 9ict
      protein/DNA complex; complexed with dgt, mn, na
      1. region a:149-335 [76124]
    50. 8icq
      protein/DNA complex; complexed with na
      1. region a:149-335 [76067]
    51. 7icr
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76027]
    52. 7icp
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76023]
    53. 9icg
      protein/DNA complex; complexed with dcp, na, zn
      1. region a:149-335 [76098]
    54. 9ich
      protein/DNA complex; complexed with dgt, na, zn
      1. region a:149-335 [76100]
    55. 9icj
      protein/DNA complex; complexed with na, so4
      1. region a:149-335 [76104]
    56. 8icr
      protein/DNA complex; complexed with dtp, mn, na
      1. region a:149-335 [76069]
    57. 1zqk
      protein/DNA complex; complexed with k
      1. region a:149-335 [75956]
    58. 8icm
      protein/DNA complex; complexed with na, so4
      1. region a:149-335 [76059]
    59. 1zqa
      protein/DNA complex; complexed with k
      1. region a:149-335 [75936]
    60. 8icx
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:149-335 [76081]
    61. 8ica
      protein/DNA complex; complexed with ca, dtp, na
      1. region a:149-335 [76037]
    62. 8icz
      protein/DNA complex; complexed with na, so4
      1. region a:149-335 [76085]
    63. 7ics
      protein/DNA complex; complexed with na
      1. region a:149-335 [76029]
    64. 1zqf
      protein/DNA complex; complexed with cs
      1. region a:149-335 [75946]
    65. 9icf
      protein/DNA complex; complexed with dtp, na, zn
      1. region a:149-335 [76096]
    66. 9ica
      protein/DNA complex; complexed with mn, stp
      1. region a:149-335 [76088]
    67. 1zqb
      protein/DNA complex; complexed with ba
      1. region a:149-335 [75938]
    68. 8icb
      protein/DNA complex; complexed with na
      1. region a:149-335 [76039]
    69. 7icf
      protein/DNA complex; complexed with cd, na
      1. region a:149-335 [76003]
    70. 7icl
      protein/DNA complex; complexed with na
      1. region a:149-335 [76015]
    71. 9icc
      protein/DNA complex; complexed with cr, dtp, na
      1. region a:149-335 [76092]
    72. 9icb
      protein/DNA complex; complexed with co, dtp, na
      1. region a:149-335 [76090]
    73. 8icg
      protein/DNA complex; complexed with na
      1. region a:149-335 [76047]
    74. 8icf
      protein/DNA complex; complexed with dtp, na
      1. region a:149-335 [76045]
    75. 1zqg
      protein/DNA complex; complexed with na
      1. region a:149-335 [75948]
    76. 1zqm
      protein/DNA complex; complexed with mn
      1. region a:149-335 [75960]
    77. 8icl
      protein/DNA complex; complexed with dtp, na, ni
      1. region a:149-335 [76057]
    78. 1zqo
      protein/DNA complex; complexed with na
      1. region a:149-335 [75964]
    79. 8icu
      protein/DNA complex; complexed with dad, mn, na
      1. region a:149-335 [76075]
    80. 9icy
      protein/DNA complex; complexed with na, so4
      1. region a:149-335 [76134]
    81. 1zqn
      protein/DNA complex; complexed with ba
      1. region a:149-335 [75962]
    82. 8icv
      protein/DNA complex; complexed with dgt, mn, na
      1. region a:149-335 [76077]
    83. 8icy
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:149-335 [76083]
    84. 8ict
      protein/DNA complex; complexed with dcp, mn, na
      1. region a:149-335 [76073]
    85. 1zqs
      protein/DNA complex; complexed with na
      1. region a:149-335 [75972]
    86. 9icp
      protein/DNA complex; complexed with na
      1. region a:149-335 [76116]
    87. 1zqc
      protein/DNA complex; complexed with ca
      1. region a:149-335 [75940]
    88. 1bpx
      protein/DNA complex; complexed with na
      1. region a:149-335 [75818]
    89. 7ico
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76021]
    90. 9ici
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [76102]
    91. 1bpz
      protein/DNA complex; complexed with na
      1. region a:149-335 [75822]
    92. 7icu
      protein/DNA complex; complexed with cd, na
      1. region a:149-335 [76033]
    93. 1zql
      protein/DNA complex; complexed with mn
      1. region a:149-335 [75958]
    94. 8icj
      protein/DNA complex; complexed with na, ttp
      1. region a:149-335 [76053]
    95. 8ich
      protein/DNA complex; complexed with na
      1. region a:149-335 [76049]
    96. 8ice
      protein/DNA complex; complexed with cd, dtp, na
      1. region a:149-335 [76043]
    97. 7icv
      protein/DNA complex; complexed with na
      1. region a:149-335 [76035]
    98. 1zqq
      protein/DNA complex; complexed with mn, na
      1. region a:149-335 [75968]
    99. 1zqd
      protein/DNA complex; complexed with ca
      1. region a:149-335 [75942]
    100. 8icw
      protein/DNA complex; complexed with mn, na, ttp
      1. region a:149-335 [76079]
    101. 7icj
      protein/DNA complex; complexed with cu, na
      1. region a:149-335 [76011]
    102. 1zqt
      protein/DNA complex; complexed with na, zn
      1. region a:149-335 [75974]
    103. 1zqe
      protein/DNA complex; complexed with cr
      1. region a:149-335 [75944]
    104. 1zqr
      protein/DNA complex; complexed with na, ni
      1. region a:149-335 [75970]
    105. 9ice
      protein/DNA complex; complexed with na
      1. region a:149-335 [76094]
    106. 1zqj
      protein/DNA complex; complexed with ca
      1. region a:149-335 [75954]
    107. 1zqh
      protein/DNA complex; complexed with na
      1. region a:149-335 [75950]
  2. Rat (Rattus norvegicus) [TaxId: 10116] [81576] (18)
    1. 2van
      automatically matched to d1bpba2
      mutant
      1. region a:149-335 [152827]
    2. 1jn3
      mutant
      1. region a:149-335 [75865]
    3. 1rpl
      1. region a:149-335 [75934]
    4. 1zqw
      1. region a:149-335 [75980]
    5. 1zqy
      1. region a:149-335 [75984]
    6. 1huz
      complexed with cr, mdn
      1. region a:149-334 [75851]
      2. region b:149-334 [75853]
    7. 1bpb
      1. region a:149-335 [75812]
    8. 1huo
      complexed with cr, tte
      1. region a:149-334 [75847]
      2. region b:149-334 [75849]
    9. 1zqu
      1. region a:149-335 [75976]
    10. 1zqx
      1. region a:149-335 [75982]
    11. 2bpc
      complexed with mn
      1. region a:149-335 [75990]
    12. 1zqz
      complexed with mn
      1. region a:149-335 [75986]
    13. 1nom
      complexed with mn
      1. region a:149-335 [75930]
    14. 1zqv
      complexed with ca
      1. region a:149-335 [75978]
    15. 2bpf
      protein/DNA complex; complexed with dct, mg
      1. region a:149-335 [75992]
    16. 2bpg
      protein/DNA complex; complexed with dct, mg
      1. region a:149-335 [75994]
      2. region b:149-335 [75996]
    17. 1bpd
      complexed with po4
      1. region a:149-335 [75814]
    18. 1bpe
      complexed with dtp
      1. region a:149-335 [75816]
2. Terminal deoxynucleotidyl transferase [81581]
  1. Mouse (Mus musculus) [TaxId: 10090] [81580] (3)
    1. 1jms
      complexed with mg, na
      1. region a:303-510 [75863]
    2. 1kdh
      complexed with bro, mg, na
      1. region a:303-510 [75883]
    3. 1kej
      complexed with co, dad, na
      1. region a:303-510 [75885]
3. DNA polymerase lambda [102943]
  1. Human (Homo sapiens) [TaxId: 9606] [102944] (24)
    1. 2bcq
      automatically matched to d1rzta3
      complexed with edo, mg, na, ppv
      1. region a:386-575 [128306]
    2. 2bcr
      automatically matched to d1rzta3
      complexed with edo, mg, na, ppv
      1. region a:386-575 [128309]
    3. 2pfn
      automatically matched to d1rzta3
      complexed with dup, mg, na; mutant
      1. region a:386-575 [139674]
    4. 1xsn
      automatically matched to d1rzta3
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region a:386-575 [122284]
    5. 2bcv
      automatically matched to d1rzta3
      complexed with mg, na, o2c, ttp
      1. region a:386-575 [128318]
    6. 2pfo
      automatically matched to d1rzta3
      complexed with dup, edo, mg, mn, na; mutant
      1. region a:386-575 [139677]
    7. 2pfp
      automatically matched to d1rzta3
      complexed with dcp, mg, na; mutant
      1. region a:386-575 [139680]
    8. 1xsp
      automatically matched to d1rzta3
      complexed with na, ppv; mutant
      1. region a:386-575 [122287]
    9. 3c5g
      automatically matched to d1rzta3
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region a:386-575 [155945]
    10. 3c5g
      automatically matched to d1rzta3
      complexed with 2dt, d3t, edo, mg, na; mutant
      1. region b:386-575 [155948]
    11. 2bcs
      automatically matched to d1rzta3
      complexed with mg, na, ppv
      1. region a:386-575 [128312]
    12. 1rzt
      complexed with edo, na; mutant
      1. region a:386-575 [98226]
      2. region e:386-575 [98229]
      3. region i:386-575 [98232]
      4. region m:386-575 [98235]
    13. 1xsl
      automatically matched to d1rzta3
      complexed with cac, mg, na
      1. region a:386-575 [122272]
    14. 1xsl
      automatically matched to d1rzta3
      complexed with cac, mg, na
      1. region e:386-575 [122275]
    15. 1xsl
      automatically matched to d1rzta3
      complexed with cac, mg, na
      1. region i:386-575 [122278]
    16. 1xsl
      automatically matched to d1rzta3
      complexed with cac, mg, na
      1. region m:386-575 [122281]
    17. 2bcu
      automatically matched to d1rzta3
      complexed with na, ppv
      1. region a:386-575 [128315]
    18. 3c5f
      automatically matched to d1rzta3
      complexed with na; mutant
      1. region a:386-575 [155939]
    19. 3c5f
      automatically matched to d1rzta3
      complexed with na; mutant
      1. region b:386-575 [155942]
    20. 2gws
      automatically matched to d1rzta3
      complexed with cac, cl, edo, mg, na
      1. region a:386-575 [135815]
    21. 2gws
      automatically matched to d1rzta3
      complexed with cac, cl, edo, mg, na
      1. region e:386-575 [135818]
    22. 2gws
      automatically matched to d1rzta3
      complexed with cac, cl, edo, mg, na
      1. region i:386-575 [135821]
    23. 2gws
      automatically matched to d1rzta3
      complexed with cac, cl, edo, mg, na
      1. region m:386-575 [135824]
    24. 2pfq
      automatically matched to d1rzta3
      complexed with dcp, mg, mn, na, ppv; mutant
      1. region a:386-575 [139683]
4. DNA polymerase X [69885]
  1. African swine fever virus [TaxId: 10497] [69886] (2)
    1. 1jqr
      1. chain a [67107]
    2. 1jaj
      1. chain a [66471]
Poly A polymerase head domain-like [82661] (3)
overlaps with the N-terminal part of Pfam 01743; this family is distinct from eukaryotic PAPs
insert X in the core is an alpha-beta(2) unit; contains two extra C-terminal strands; mixed 7-stranded sheet, order: 7612543
1. tRNA CCA-adding enzyme, head domain [82662]
  1. Bacillus stearothermophilus [TaxId: 1422] [82663] (3)
    1. 1miw
      complexed with atp, mg, mse
      1. region a:1-139 [79163]
      2. region b:1-139 [79165]
    2. 1miv
      complexed with mg, mse
      1. region a:1-139 [79159]
      2. region b:1-139 [79161]
    3. 1miy
      complexed with ctp, mg
      1. region a:1-139 [79169]
      2. region b:1-139 [79171]
  2. Human (Homo sapiens), mitochondrial [TaxId: 9606] [89924] (1)
    1. 1ou5
      1. region a:-1-150 [87446]
      2. region b:-1-150 [87448]
2. Poly A polymerase PcnB [110931]
  1. Aquifex aeolicus [TaxId: 63363] [110932] (1)
    SQ O66728 443-824
    1. 1vfg
      complexed with apc
      1. region a:1-136 [108571]
      2. region b:1-136 [108573]
RelA/SpoT domain [102945] (2)
Pfam 04607; ppGpp-synthetase
1. Stringent response-like protein RelA domain 2 [102946]
  1. Streptococcus equisimilis [TaxId: 119602] [102947] (1)
    1. 1vj7
      complexed with gdp, gpx, mn
      1. region a:197-371 [100802]
      2. region b:197-370 [100804]
2. Putative GTP pyrophosphokinase SP1097 [143234]
  1. Streptococcus pneumoniae [TaxId: 1313] [143235] (2)
    SQ Q97QV1 1-203
    1. 2be3
      complexed with cl, gol, pg4
      1. region a:1-203 [128349]
    2. 2be3
      automatically matched to 2BE3 A:1-203
      complexed with cl, gol, pg4
      1. region b:2-201 [128350]
GlnE-like domain [110933] (1)
Pfam 03710; Pfam coverage excludes the extra N-terminal subdomain but includes a short segment of the next domain 2
1. Glutamine synthase adenylyltransferase GlnE, N-terminal domain [110934]
  includes extra N-terminal all-alpha subdomain (2-61) structurally similar to the PABP domain (scop_fa 63571)
  1. Escherichia coli [TaxId: 562] [110935] (1)
    SQ P30870 1-437
    1. 1v4a
      1. region a:2-286 [108351]
RNA editing terminal uridyl transferase 2, RET2, catalytic domain [143236] (1)
contains insert domain of a ferredoxin-like fold
1. RNA editing terminal uridyl transferase 2, TUTase 2, RET2 [143237]
  1. Trypanosoma brucei [TaxId: 5691] [143238] (1)
    SQ Q86MV5 30-288
    1. 2b4v
      complexed with k; mutant
      1. region a:30-288 [127865]
TM1012-like [143239] (1)
insert X in the core is an alpha-beta(2) unit; contains extra C-terminal structures; mixed 7-stranded sheet, order: 6712543;
1. Hypothetical protein TM1012 [143240]
  1. Thermotoga maritima [TaxId: 2336] [143241] (2)
    SQ Q9X0A5 1-157! SQ Q9X0A5 2-157
    1. 2fcl
      complexed with edo, mly, unl
      1. region a:1-157 [133273]
    2. 2ewr
      complexed with edo
      1. region a:2-157 [132493]
Iojap/YbeB-like [160252] (2)
Pfam 02410, probably has evolved a different function; closer relationship to the GrpB-like family
1. Hypothetical protein CV0518 [160253]
  1. Chromobacterium violaceum [TaxId: 536] [160254] (2)
    SQ Q7P0P8 1-120
    1. 2id1
      complexed with iod
      1. region a:1-120 [147622]
    2. 2id1
      automatically matched to 2ID1 A:1-120
      complexed with iod
      1. region b:1-120 [147623]
2. Uncharacterized protein BH1328 [160255]
  1. Bacillus halodurans [TaxId: 86665] [160256] (2)
    SQ Q9KD89 2-114
    1. 2o5a
      complexed with mn, so4
      1. region a:2-114 [148593]
    2. 2o5a
      automatically matched to 2O5A A:2-114
      complexed with mn, so4
      1. region b:3-112 [148594]
AadK N-terminal domain-like [160257] (1)
N-terminal part of Pfam 04439; Streptomycin adenylyltransferase; insert X is alpha-beta(2) unit; overall domain architecture is similar to Kanamycin nucleotidyltransferase
1. Aminoglycoside 6-adenylyltransferase AadK [160258]
  1. Bacillus subtilis [TaxId: 1423] [160259] (1)
    SQ P17585 1-135
    1. 2pbe
      1. region a:1-135 [149356]
GrpB-like [160260] (1)
Pfam 04229, different set of active-site residues
1. Hypothetical protein GrpB [160261]
  1. Enterococcus faecalis [TaxId: 1351] [160262] (1)
    SQ Q837C3 4-170
    1. 2nrk
      1. region a:4-170 [148379]