Structural Classification of Proteins
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Family: DNA polymerase beta-like

insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Nucleotidyltransferase [81302]
    core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
  4. Superfamily: Nucleotidyltransferase [81301]
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase beta-like [81300]
    insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

Protein Domains:

  1. DNA polymerase beta, catalytic (31 kD) fragment [81578]
    1. Human (Homo sapiens) [TaxId: 9606] [81574] (107)
      SQ P06746
      1. 2fmp picpicxrefxref
        automatically matched to d1bpxa4
        complexed with dct, doc, mg, na
        1. region a:149-335 [133788] picpiclink
      2. 1tv9 picpicxrefxref
        complexed with mg, na, po4
        1. region a:149-335 [112677] picpiclink
      3. 2fms picpicxrefxref
        automatically matched to d1bpxa4
        complexed with cl, dup, mg, na
        1. region a:149-335 [133794] picpiclink
      4. 2i9g picpicxrefxref
        automatically matched to d1bpxa4
        complexed with bpi, cl, doc, na
        1. region a:149-335 [137128] picpiclink
      5. 2iso picpicxrefxref
        automatically matched to d1bpxa4
        complexed with cl, doc, gff, mg, na
        1. region a:149-335 [137608] picpiclink
      6. 2fmq picpicxrefxref
        automatically matched to d1bpxa4
        complexed with dup, mg, na
        1. region a:149-335 [133791] picpiclink
      7. 2pxi picpicxrefxref
        automatically matched to d1bpxa4
        complexed with cl, doc, gfh, mg, na
        1. region a:149-335 [149913] picpiclink
      8. 2isp picpicxrefxref
        automatically matched to d1bpxa4
        complexed with cl, doc, ggh, mg, na
        1. region a:149-335 [137611] picpiclink
      9. 1zjm picpicxrefxref
        automatically matched to d1bpxa4
        complexed with na
        1. region a:149-335 [125155] picpiclink
      10. 3c2m picpicxrefxref
        automatically matched to d1bpxa4
        complexed with edo, f2a, mn, na
        1. region a:149-335 [155884] picpiclink
      11. 3c2k picpicxrefxref
        automatically matched to d1bpxa4
        complexed with cl, dup, mn, na
        1. region a:149-335 [155878] picpiclink
      12. 1tva picpicxrefxref
        complexed with mg, na, po4
        1. region a:149-335 [112680] picpiclink
      13. 2p66 picpicxrefxref
        automatically matched to d1bpxa4
        complexed with 3dr, na, po4
        1. region a:149-335 [139508] picpiclink
      14. 1zjn picpicxrefxref
        automatically matched to d1bpxa4
        complexed with dgt, mg, na
        1. region a:149-334 [125158] picpiclink
      15. 1mq3 picpicxrefxref
        complexed with 8og, dcp, doc, mg, na
        1. region a:149-335 [79399] picpiclink
      16. 3c2l picpicxrefxref
        automatically matched to d1bpxa4
        complexed with f2a, mn, na
        1. region a:149-335 [155881] picpiclink
      17. 1mq2 picpicxrefxref
        complexed with 2da, 8og, a, na
        1. region a:149-335 [79396] picpiclink
      18. 1bpy picpicxrefxref
        protein/DNA complex; complexed with dct, doc, mg, na
        1. region a:149-335 [75820] picpiclink
      19. 9icw picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:149-335 [76130] picpiclink
      20. 9ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76106] picpiclink
      21. 9icx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76132] picpiclink
      22. 9icl picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:149-335 [76108] picpiclink
      23. 7ici picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76009] picpiclink
      24. 9icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76110] picpiclink
      25. 7ick picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76013] picpiclink
      26. 7icq picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76025] picpiclink
      27. 1zqp picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:149-335 [75966] picpiclink
      28. 7ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76001] picpiclink
      29. 8ico picpicxrefxref
        protein/DNA complex; complexed with azt, mn, na
        1. region a:149-335 [76063] picpiclink
      30. 9ico picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76114] picpiclink
      31. 1zqi picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:149-335 [75952] picpiclink
      32. 8ick picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:149-335 [76055] picpiclink
      33. 7icn picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76019] picpiclink
      34. 9icv picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:149-335 [76128] picpiclink
      35. 8icc picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76041] picpiclink
      36. 8ici picpicxrefxref
        protein/DNA complex; complexed with mg, na
        1. region a:149-335 [76051] picpiclink
      37. 7ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76007] picpiclink
      38. 7ict picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76031] picpiclink
      39. 7icm picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76017] picpiclink
      40. 9icn picpicxrefxref
        protein/DNA complex; complexed with dct, mg, na
        1. region a:149-335 [76112] picpiclink
      41. 7icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76005] picpiclink
      42. 8ics picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:149-335 [76071] picpiclink
      43. 9icu picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:149-335 [76126] picpiclink
      44. 8icn picpicxrefxref
        protein/DNA complex; complexed with atp, mn, na
        1. region a:149-335 [76061] picpiclink
      45. 9ics picpicxrefxref
        protein/DNA complex; complexed with dct, mn, na
        1. region a:149-335 [76122] picpiclink
      46. 9icq picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:149-335 [76118] picpiclink
      47. 8icp picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:149-335 [76065] picpiclink
      48. 9icr picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:149-335 [76120] picpiclink
      49. 9ict picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:149-335 [76124] picpiclink
      50. 8icq picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76067] picpiclink
      51. 7icr picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76027] picpiclink
      52. 7icp picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76023] picpiclink
      53. 9icg picpicxrefxref
        protein/DNA complex; complexed with dcp, na, zn
        1. region a:149-335 [76098] picpiclink
      54. 9ich picpicxrefxref
        protein/DNA complex; complexed with dgt, na, zn
        1. region a:149-335 [76100] picpiclink
      55. 9icj picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:149-335 [76104] picpiclink
      56. 8icr picpicxrefxref
        protein/DNA complex; complexed with dtp, mn, na
        1. region a:149-335 [76069] picpiclink
      57. 1zqk picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:149-335 [75956] picpiclink
      58. 8icm picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:149-335 [76059] picpiclink
      59. 1zqa picpicxrefxref
        protein/DNA complex; complexed with k
        1. region a:149-335 [75936] picpiclink
      60. 8icx picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:149-335 [76081] picpiclink
      61. 8ica picpicxrefxref
        protein/DNA complex; complexed with ca, dtp, na
        1. region a:149-335 [76037] picpiclink
      62. 8icz picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:149-335 [76085] picpiclink
      63. 7ics picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76029] picpiclink
      64. 1zqf picpicxrefxref
        protein/DNA complex; complexed with cs
        1. region a:149-335 [75946] picpiclink
      65. 9icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na, zn
        1. region a:149-335 [76096] picpiclink
      66. 9ica picpicxrefxref
        protein/DNA complex; complexed with mn, stp
        1. region a:149-335 [76088] picpiclink
      67. 1zqb picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:149-335 [75938] picpiclink
      68. 8icb picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76039] picpiclink
      69. 7icf picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:149-335 [76003] picpiclink
      70. 7icl picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76015] picpiclink
      71. 9icc picpicxrefxref
        protein/DNA complex; complexed with cr, dtp, na
        1. region a:149-335 [76092] picpiclink
      72. 9icb picpicxrefxref
        protein/DNA complex; complexed with co, dtp, na
        1. region a:149-335 [76090] picpiclink
      73. 8icg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76047] picpiclink
      74. 8icf picpicxrefxref
        protein/DNA complex; complexed with dtp, na
        1. region a:149-335 [76045] picpiclink
      75. 1zqg picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75948] picpiclink
      76. 1zqm picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:149-335 [75960] picpiclink
      77. 8icl picpicxrefxref
        protein/DNA complex; complexed with dtp, na, ni
        1. region a:149-335 [76057] picpiclink
      78. 1zqo picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75964] picpiclink
      79. 8icu picpicxrefxref
        protein/DNA complex; complexed with dad, mn, na
        1. region a:149-335 [76075] picpiclink
      80. 9icy picpicxrefxref
        protein/DNA complex; complexed with na, so4
        1. region a:149-335 [76134] picpiclink
      81. 1zqn picpicxrefxref
        protein/DNA complex; complexed with ba
        1. region a:149-335 [75962] picpiclink
      82. 8icv picpicxrefxref
        protein/DNA complex; complexed with dgt, mn, na
        1. region a:149-335 [76077] picpiclink
      83. 8icy picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:149-335 [76083] picpiclink
      84. 8ict picpicxrefxref
        protein/DNA complex; complexed with dcp, mn, na
        1. region a:149-335 [76073] picpiclink
      85. 1zqs picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75972] picpiclink
      86. 9icp picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76116] picpiclink
      87. 1zqc picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:149-335 [75940] picpiclink
      88. 1bpx picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75818] picpiclink
      89. 7ico picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76021] picpiclink
      90. 9ici picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [76102] picpiclink
      91. 1bpz picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75822] picpiclink
      92. 7icu picpicxrefxref
        protein/DNA complex; complexed with cd, na
        1. region a:149-335 [76033] picpiclink
      93. 1zql picpicxrefxref
        protein/DNA complex; complexed with mn
        1. region a:149-335 [75958] picpiclink
      94. 8icj picpicxrefxref
        protein/DNA complex; complexed with na, ttp
        1. region a:149-335 [76053] picpiclink
      95. 8ich picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76049] picpiclink
      96. 8ice picpicxrefxref
        protein/DNA complex; complexed with cd, dtp, na
        1. region a:149-335 [76043] picpiclink
      97. 7icv picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76035] picpiclink
      98. 1zqq picpicxrefxref
        protein/DNA complex; complexed with mn, na
        1. region a:149-335 [75968] picpiclink
      99. 1zqd picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:149-335 [75942] picpiclink
      100. 8icw picpicxrefxref
        protein/DNA complex; complexed with mn, na, ttp
        1. region a:149-335 [76079] picpiclink
      101. 7icj picpicxrefxref
        protein/DNA complex; complexed with cu, na
        1. region a:149-335 [76011] picpiclink
      102. 1zqt picpicxrefxref
        protein/DNA complex; complexed with na, zn
        1. region a:149-335 [75974] picpiclink
      103. 1zqe picpicxrefxref
        protein/DNA complex; complexed with cr
        1. region a:149-335 [75944] picpiclink
      104. 1zqr picpicxrefxref
        protein/DNA complex; complexed with na, ni
        1. region a:149-335 [75970] picpiclink
      105. 9ice picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [76094] picpiclink
      106. 1zqj picpicxrefxref
        protein/DNA complex; complexed with ca
        1. region a:149-335 [75954] picpiclink
      107. 1zqh picpicxrefxref
        protein/DNA complex; complexed with na
        1. region a:149-335 [75950] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [81576] (18)
      1. 2van picpicxref
        automatically matched to d1bpba2
        mutant
        1. region a:149-335 [152827] picpiclink
      2. 1jn3 picpicxref
        mutant
        1. region a:149-335 [75865] picpiclink
      3. 1rpl picpicxref
        1. region a:149-335 [75934] picpiclink
      4. 1zqw picpicxref
        1. region a:149-335 [75980] picpiclink
      5. 1zqy picpicxref
        1. region a:149-335 [75984] picpiclink
      6. 1huz picpicxrefxref
        complexed with cr, mdn
        1. region a:149-334 [75851] picpiclink
        2. region b:149-334 [75853] picpiclink
      7. 1bpb picpicxref
        1. region a:149-335 [75812] picpiclink
      8. 1huo picpicxrefxref
        complexed with cr, tte
        1. region a:149-334 [75847] picpiclink
        2. region b:149-334 [75849] picpiclink
      9. 1zqu picpicxref
        1. region a:149-335 [75976] picpiclink
      10. 1zqx picpicxref
        1. region a:149-335 [75982] picpiclink
      11. 2bpc picpicxref
        complexed with mn
        1. region a:149-335 [75990] picpiclink
      12. 1zqz picpicxref
        complexed with mn
        1. region a:149-335 [75986] picpiclink
      13. 1nom picpicxref
        complexed with mn
        1. region a:149-335 [75930] picpiclink
      14. 1zqv picpicxref
        complexed with ca
        1. region a:149-335 [75978] picpiclink
      15. 2bpf picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:149-335 [75992] picpiclink
      16. 2bpg picpicxrefxref
        protein/DNA complex; complexed with dct, mg
        1. region a:149-335 [75994] picpiclink
        2. region b:149-335 [75996] picpiclink
      17. 1bpd picpicxrefxref
        complexed with po4
        1. region a:149-335 [75814] picpiclink
      18. 1bpe picpicxrefxref
        complexed with dtp
        1. region a:149-335 [75816] picpiclink
  2. Terminal deoxynucleotidyl transferase [81581]
    1. Mouse (Mus musculus) [TaxId: 10090] [81580] (3)
      1. 1jms picpicxrefxref
        complexed with mg, na
        1. region a:303-510 [75863] picpiclink
      2. 1kdh picpicxrefxref
        complexed with bro, mg, na
        1. region a:303-510 [75883] picpiclink
      3. 1kej picpicxrefxref
        complexed with co, dad, na
        1. region a:303-510 [75885] picpiclink
  3. DNA polymerase lambda [102943]
    1. Human (Homo sapiens) [TaxId: 9606] [102944] (24)
      1. 2bcq picpicxrefxref
        automatically matched to d1rzta3
        complexed with edo, mg, na, ppv
        1. region a:386-575 [128306] picpiclink
      2. 2bcr picpicxrefxref
        automatically matched to d1rzta3
        complexed with edo, mg, na, ppv
        1. region a:386-575 [128309] picpiclink
      3. 2pfn picpicxrefxref
        automatically matched to d1rzta3
        complexed with dup, mg, na; mutant
        1. region a:386-575 [139674] picpiclink
      4. 1xsn picpicxrefxref
        automatically matched to d1rzta3
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:386-575 [122284] picpiclink
      5. 2bcv picpicxrefxref
        automatically matched to d1rzta3
        complexed with mg, na, o2c, ttp
        1. region a:386-575 [128318] picpiclink
      6. 2pfo picpicxrefxref
        automatically matched to d1rzta3
        complexed with dup, edo, mg, mn, na; mutant
        1. region a:386-575 [139677] picpiclink
      7. 2pfp picpicxrefxref
        automatically matched to d1rzta3
        complexed with dcp, mg, na; mutant
        1. region a:386-575 [139680] picpiclink
      8. 1xsp picpicxrefxref
        automatically matched to d1rzta3
        complexed with na, ppv; mutant
        1. region a:386-575 [122287] picpiclink
      9. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region a:386-575 [155945] picpiclink
      10. 3c5g picpicxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with 2dt, d3t, edo, mg, na; mutant
        1. region b:386-575 [155948] picpiclink
      11. 2bcs picpicxrefxref
        automatically matched to d1rzta3
        complexed with mg, na, ppv
        1. region a:386-575 [128312] picpiclink
      12. 1rzt picpicxrefxref
        complexed with edo, na; mutant
        1. region a:386-575 [98226] picpiclink
        2. region e:386-575 [98229] picpiclink
        3. region i:386-575 [98232] picpiclink
        4. region m:386-575 [98235] picpiclink
      13. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, mg, na
        1. region a:386-575 [122272] picpiclink
      14. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, mg, na
        1. region e:386-575 [122275] picpiclink
      15. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, mg, na
        1. region i:386-575 [122278] picpiclink
      16. 1xsl picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, mg, na
        1. region m:386-575 [122281] picpiclink
      17. 2bcu picpicxrefxref
        automatically matched to d1rzta3
        complexed with na, ppv
        1. region a:386-575 [128315] picpiclink
      18. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with na; mutant
        1. region a:386-575 [155939] picpiclink
      19. 3c5f picpicxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with na; mutant
        1. region b:386-575 [155942] picpiclink
      20. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, cl, edo, mg, na
        1. region a:386-575 [135815] picpiclink
      21. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, cl, edo, mg, na
        1. region e:386-575 [135818] picpiclink
      22. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, cl, edo, mg, na
        1. region i:386-575 [135821] picpiclink
      23. 2gws picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1rzta3
        complexed with cac, cl, edo, mg, na
        1. region m:386-575 [135824] picpiclink
      24. 2pfq picpicxrefxref
        automatically matched to d1rzta3
        complexed with dcp, mg, mn, na, ppv; mutant
        1. region a:386-575 [139683] picpiclink
  4. DNA polymerase X [69885]
    1. African swine fever virus [TaxId: 10497] [69886] (2)
      1. 1jqr picpic
        1. chain a [67107] picpiclink
      2. 1jaj picpic
        1. chain a [66471] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk