Structural Classification of Proteins

Fold: FwdE/GAPDH domain-like

: core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: FwdE/GAPDH domain-like [55346]
core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1

Superfamilies:

Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347] (5)
N-terminal domain is the classic Rossmann-fold
uperfamily
1. GAPDH-like [55348] (29)
  has many additional secondary structures
  1. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349]
    1. Escherichia coli [TaxId: 562] [55350] (13)
      SQ P06977
    2. Bacillus stearothermophilus, nca 1503 [TaxId: 1422] [55351] (14)
    3. Achromobacter xylosoxidans [TaxId: 85698] [89987] (1)
      formerly Alcaligenes xylosoxidans
    4. Thermus aquaticus [TaxId: 271] [55352] (13)
    5. Thermus thermophilus [TaxId: 274] [103101] (1)
    6. Thermotoga maritima [TaxId: 2336] [55353] (1)
    7. Archaeon Sulfolobus solfataricus [TaxId: 2287] [55354] (1)
    8. Archaeon Methanothermus fervidus [TaxId: 2180] [55355] (1)
    9. Trypanosoma brucei brucei, glycosome [TaxId: 5702] [55356] (1)
    10. Trypanosoma cruzi [TaxId: 5693] [75483] (7)
    11. Leishmania mexicana [TaxId: 5665] [55357] (5)
    12. American lobster (Homarus americanus) [TaxId: 6706] [55358] (2)
    13. South China Sea lobster (Palinurus versicolor) [TaxId: 150436] [55359] (5)
    14. Human (Homo sapiens) [TaxId: 9606] [55360] (1)
    15. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [103102] (1)
    16. Spinach (Spinacia oleracea) [TaxId: 3562] [69769] (24)
      SQ P19866
    17. Human(Homo sapiens), liver isoform [TaxId: 9606] [143535] (8)
      SQ P04406 151-314
    18. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [143536] (12)
      SQ Q8IKK7 153-318! SQ Q8T6B1 153-318
    19. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143537] (4)
      SQ O59494 140-301
  2. Aspartate beta-semialdehyde dehydrogenase [55361]
    1. Escherichia coli [TaxId: 562] [55362] (4)
      SQ P00353
    2. Vibrio cholerae [TaxId: 666] [82725] (2)
    3. Haemophilus influenzae [TaxId: 727] [103103] (12)
      SQ P44801
    4. Streptococcus pneumoniae [TaxId: 1313] [143538] (11)
      SQ Q8DQ00 128-329
  3. Acetaldehyde dehydrogenase (acylating) [89988]
    1. Pseudomonas sp. [TaxId: 306] [89989] (1)
  4. N-acetyl-gamma-glutamyl-phosphate reductase ArgC [111046]
    1. Thermotoga maritima [TaxId: 2336] [111047] (1)
      SQ Q9X2A2
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118038] (5)
      SQ O82187 15-359
    3. Salmonella typhimurium [TaxId: 90371] [143539] (1)
      SQ Q8ZKL8 154-308
  5. Putative semialdehyde dehydrogenase [143540]
    1. Rice (Oryza sativa) [TaxId: 4530] [143541] (4)
      SQ Q6AV34 219-383
  6. Usg-1 protein homolog PA3116 [143542]
    1. Pseudomonas aeruginosa [TaxId: 287] [143543] (1)
      SQ O87014 130-319
2. Homoserine dehydrogenase-like [55363] (2)
  1. Homoserine dehydrogenase [55364]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55365] (4)
      SQ P31116
  2. Saccharopine reductase [55366]
    contains an alpha-helical subdomain inserted in the common fold and other additional secondary structures
    1. Rice blast fungus (Magnaporthe grisea) [TaxId: 148305] [55367] (3)
3. Dihydrodipicolinate reductase-like [55368] (12)
  1. Diaminopimelic acid dehydrogenase (DAPDH) [55369]
    distantly related to dihydrodipicolinate reductase
    larger alpha+beta subdomain substitutes for one helix and one strand of the common fold
    1. Corynebacterium glutamicum [TaxId: 1718] [55370] (4)
  2. Dihydrodipicolinate reductase [55371]
    1. Escherichia coli [TaxId: 562] [55372] (5)
    2. Mycobacterium tuberculosis [TaxId: 1773] [103104] (14)
    3. Thermotoga maritima [TaxId: 2336] [111048] (1)
      SQ Q9X1K8
  3. Myo-inositol 1-phosphate synthase [75484]
    1. Mycobacterium tuberculosis [TaxId: 1773] [75485] (1)
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [75486] (9)
      SQ P11986
    3. Archaeoglobus fulgidus [TaxId: 2234] [111049] (1)
      SQ O28480
    4. Caenorhabditis elegans [TaxId: 6239] [111050] (1)
      SQ Q18664
  4. Hypothetical protein TM1419 [103105]
    myo-inositol 1-phosphate synthase-related protein
    1. Thermotoga maritima [TaxId: 2336] [103106] (1)
  5. Hypothetical protein TM1643 [75487]
    1. Thermotoga maritima [TaxId: 2336] [75488] (2)
  6. 1-deoxy-D-xylulose-5-phosphate reductoisomerase [69770]
    1. Escherichia coli [TaxId: 562] [69771] (12)
      SQ P45568
    2. Zymomonas mobilis [TaxId: 542] [111051] (2)
      SQ Q9X5F2
4. Biliverdin reductase [55373] (1)
  1. Biliverdin reductase [55374]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55375] (3)
5. Glucose 6-phosphate dehydrogenase-like [55376] (8)
  has many additional secondary structures
  1. Glucose-fructose oxidoreductase [55377]
    very similar to the glucose 6-phosphate dehydrogenase domain
    1. Zymomonas mobilis [TaxId: 542] [55378] (12)
  2. Glucose 6-phosphate dehydrogenase [55379]
    1. Leuconostoc mesenteroides [TaxId: 1245] [55380] (9)
    2. Human (Homo sapiens) [TaxId: 9606] [55381] (1)
  3. Virulence factor MviM [111052]
    1. Escherichia coli [TaxId: 562] [111053] (1)
      SQ P75931
  4. Putative oxidoreductase VCA1048 [111054]
    1. Vibrio cholerae [TaxId: 666] [111055] (1)
      SQ Q9KKQ4
  5. Probable oxidoreductase At4g09670 [118039]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118040] (1)
      SQ Q9SZ83
  6. Hypothetical protein TM0312 [143544]
    1. Thermotoga maritima [TaxId: 2336] [143545] (2)
      SQ Q9WYE8 132-275
  7. Galactose/lactose metabolism regulatory protein GAL80 [143546]
    1. Yeast (Kluyveromyces lactis) [TaxId: 28985] [143547] (9)
      SQ Q06433 155-373
Serine metabolism enzymes domain [143548] (2)
contains extra C-terminal beta-hairpin
uperfamily
1. Serine dehydratase beta chain-like [143549] (1)
  Pfam 03315
  1. L-serine dehydratase SdhL, N-terminal domain [143550]
    1. Legionella pneumophila [TaxId: 446] [143551] (3)
      SQ Q5ZXE1 17-161
2. SerA intervening domain-like [143552] (1)
  PfamB 001360; this domain is found in some but not all D-3-phosphoglycerate dehydrogenases (SerA) and related enzymes
  1. D-3-phosphoglycerate dehydrogenase SerA [143553]
    1. Mycobacterium tuberculosis [TaxId: 1773] [143554] (2)
      SQ P0A544 316-450
FwdE-like [143555] (1)
contains extra N-terminal and C-terminal structures
uperfamily
1. FwdE-like [143556] (2)
  Pfam 02663; Tungsten formylmethanofuran dehydrogenase, subunit E, FwdE, is a stand-alone domain of this fold
  1. FwdE-like protein DSY1837 (Dhaf_2201) [143557]
    1. Desulfitobacterium hafniense [TaxId: 49338] [143558] (2)
      SQ Q24WG6 3-151
  2. Uncharacterized protein Ta1109 [160525]
    1. Thermoplasma acidophilum [TaxId: 2303] [160526] (1)
      SQ Q9HJ63 1-168
V-type ATPase subunit E-like [160527] (1)
extra N-terminal helix and extra C-terminal helix form dimerisation subdomain
1. V-type ATPase subunit E [160528] (1)
  Pfam 01991
  1. V-type ATP synthase subunit E [160529]
    1. Pyrococcus horikoshii [TaxId: 53953] [160530] (3)
      SQ O57724 81-198