Structural Classification of Proteins

Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

: N-terminal domain is the classic Rossmann-fold
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: FwdE/GAPDH domain-like [55346]
core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347]
N-terminal domain is the classic Rossmann-fold
uperfamily

Families:

GAPDH-like [55348] (29)
has many additional secondary structures
1. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349]
  1. Escherichia coli [TaxId: 562] [55350] (13)
    SQ P06977
  2. Bacillus stearothermophilus, nca 1503 [TaxId: 1422] [55351] (14)
  3. Achromobacter xylosoxidans [TaxId: 85698] [89987] (1)
    formerly Alcaligenes xylosoxidans
  4. Thermus aquaticus [TaxId: 271] [55352] (13)
  5. Thermus thermophilus [TaxId: 274] [103101] (1)
  6. Thermotoga maritima [TaxId: 2336] [55353] (1)
  7. Archaeon Sulfolobus solfataricus [TaxId: 2287] [55354] (1)
  8. Archaeon Methanothermus fervidus [TaxId: 2180] [55355] (1)
  9. Trypanosoma brucei brucei, glycosome [TaxId: 5702] [55356] (1)
  10. Trypanosoma cruzi [TaxId: 5693] [75483] (7)
  11. Leishmania mexicana [TaxId: 5665] [55357] (5)
  12. American lobster (Homarus americanus) [TaxId: 6706] [55358] (2)
  13. South China Sea lobster (Palinurus versicolor) [TaxId: 150436] [55359] (5)
  14. Human (Homo sapiens) [TaxId: 9606] [55360] (1)
  15. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [103102] (1)
  16. Spinach (Spinacia oleracea) [TaxId: 3562] [69769] (24)
    SQ P19866
  17. Human(Homo sapiens), liver isoform [TaxId: 9606] [143535] (8)
    SQ P04406 151-314
  18. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [143536] (12)
    SQ Q8IKK7 153-318! SQ Q8T6B1 153-318
  19. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143537] (4)
    SQ O59494 140-301
2. Aspartate beta-semialdehyde dehydrogenase [55361]
  1. Escherichia coli [TaxId: 562] [55362] (4)
    SQ P00353
  2. Vibrio cholerae [TaxId: 666] [82725] (2)
  3. Haemophilus influenzae [TaxId: 727] [103103] (12)
    SQ P44801
  4. Streptococcus pneumoniae [TaxId: 1313] [143538] (11)
    SQ Q8DQ00 128-329
3. Acetaldehyde dehydrogenase (acylating) [89988]
  1. Pseudomonas sp. [TaxId: 306] [89989] (1)
4. N-acetyl-gamma-glutamyl-phosphate reductase ArgC [111046]
  1. Thermotoga maritima [TaxId: 2336] [111047] (1)
    SQ Q9X2A2
  2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118038] (5)
    SQ O82187 15-359
  3. Salmonella typhimurium [TaxId: 90371] [143539] (1)
    SQ Q8ZKL8 154-308
5. Putative semialdehyde dehydrogenase [143540]
  1. Rice (Oryza sativa) [TaxId: 4530] [143541] (4)
    SQ Q6AV34 219-383
6. Usg-1 protein homolog PA3116 [143542]
  1. Pseudomonas aeruginosa [TaxId: 287] [143543] (1)
    SQ O87014 130-319
Homoserine dehydrogenase-like [55363] (2)
1. Homoserine dehydrogenase [55364]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55365] (4)
    SQ P31116
2. Saccharopine reductase [55366]
  contains an alpha-helical subdomain inserted in the common fold and other additional secondary structures
  1. Rice blast fungus (Magnaporthe grisea) [TaxId: 148305] [55367] (3)
Dihydrodipicolinate reductase-like [55368] (12)
1. Diaminopimelic acid dehydrogenase (DAPDH) [55369]
  distantly related to dihydrodipicolinate reductase
  larger alpha+beta subdomain substitutes for one helix and one strand of the common fold
  1. Corynebacterium glutamicum [TaxId: 1718] [55370] (4)
2. Dihydrodipicolinate reductase [55371]
  1. Escherichia coli [TaxId: 562] [55372] (5)
  2. Mycobacterium tuberculosis [TaxId: 1773] [103104] (14)
  3. Thermotoga maritima [TaxId: 2336] [111048] (1)
    SQ Q9X1K8
3. Myo-inositol 1-phosphate synthase [75484]
  1. Mycobacterium tuberculosis [TaxId: 1773] [75485] (1)
  2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [75486] (9)
    SQ P11986
  3. Archaeoglobus fulgidus [TaxId: 2234] [111049] (1)
    SQ O28480
  4. Caenorhabditis elegans [TaxId: 6239] [111050] (1)
    SQ Q18664
4. Hypothetical protein TM1419 [103105]
  myo-inositol 1-phosphate synthase-related protein
  1. Thermotoga maritima [TaxId: 2336] [103106] (1)
5. Hypothetical protein TM1643 [75487]
  1. Thermotoga maritima [TaxId: 2336] [75488] (2)
6. 1-deoxy-D-xylulose-5-phosphate reductoisomerase [69770]
  1. Escherichia coli [TaxId: 562] [69771] (12)
    SQ P45568
  2. Zymomonas mobilis [TaxId: 542] [111051] (2)
    SQ Q9X5F2
Biliverdin reductase [55373] (1)
1. Biliverdin reductase [55374]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [55375] (3)
Glucose 6-phosphate dehydrogenase-like [55376] (8)
has many additional secondary structures
1. Glucose-fructose oxidoreductase [55377]
  very similar to the glucose 6-phosphate dehydrogenase domain
  1. Zymomonas mobilis [TaxId: 542] [55378] (12)
2. Glucose 6-phosphate dehydrogenase [55379]
  1. Leuconostoc mesenteroides [TaxId: 1245] [55380] (9)
  2. Human (Homo sapiens) [TaxId: 9606] [55381] (1)
3. Virulence factor MviM [111052]
  1. Escherichia coli [TaxId: 562] [111053] (1)
    SQ P75931
4. Putative oxidoreductase VCA1048 [111054]
  1. Vibrio cholerae [TaxId: 666] [111055] (1)
    SQ Q9KKQ4
5. Probable oxidoreductase At4g09670 [118039]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118040] (1)
    SQ Q9SZ83
6. Hypothetical protein TM0312 [143544]
  1. Thermotoga maritima [TaxId: 2336] [143545] (2)
    SQ Q9WYE8 132-275
7. Galactose/lactose metabolism regulatory protein GAL80 [143546]
  1. Yeast (Kluyveromyces lactis) [TaxId: 28985] [143547] (9)
    SQ Q06433 155-373