Structural Classification of Proteins
Family: GAPDH-like
has many additional secondary structures
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a+b)
[53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:
FwdE/GAPDH domain-like
[55346]
core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1
Superfamily:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
[55347]
N-terminal domain is the classic Rossmann-fold
uperfamily
Family:
GAPDH-like
[55348]
has many additional secondary structures
Protein Domains:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349]
Escherichia coli
[TaxId: 562]
[55350] (13)
SQ
P06977
1gad
complexed with nad
region o:149-312
[39865]
region p:149-312
[39866]
2vyn
automatically matched to d1dc3a2
complexed with fmt, nad
region a:149-311
[153708]
2vyn
automatically matched to d1dc3a2
complexed with fmt, nad
region b:149-311
[153710]
2vyn
automatically matched to d1dc3a2
complexed with fmt, nad
region c:149-311
[153712]
1s7c
complexed with mes, so4
region a:149-312
[105347]
1gae
complexed with nad; mutant
region o:149-312
[39869]
region p:149-312
[39870]
2vyv
automatically matched to d1dc3a2
complexed with 1gp, fmt, nad
region a:149-311
[153716]
2vyv
automatically matched to d1dc3a2
complexed with 1gp, fmt, nad
region b:149-311
[153718]
2vyv
automatically matched to d1dc3a2
complexed with 1gp, fmt, nad
region c:149-311
[153720]
1dc5
region a:149-312
[39867]
region b:149-312
[39868]
1dc6
complexed with nad
region a:149-312
[39871]
region b:149-312
[39872]
1dc3
region a:149-312
[39873]
region b:149-312
[39874]
1dc4
complexed with g3h
region a:149-312
[39875]
region b:149-312
[39876]
Bacillus stearothermophilus, nca 1503
[TaxId: 1422]
[55351] (14)
3cmc
automatically matched to d1gd1o2
complexed with edo, g3h, gol, nad, so4
region o:149-312
[156801]
3cmc
automatically matched to d1gd1o2
complexed with edo, g3h, gol, nad, so4
region p:149-312
[156803]
3cmc
automatically matched to d1gd1o2
complexed with edo, g3h, gol, nad, so4
region q:149-312
[156805]
3cmc
automatically matched to d1gd1o2
complexed with edo, g3h, gol, nad, so4
region r:149-312
[156807]
1gd1
complexed with nad, so4
region o:149-312
[39877]
region p:149-312
[39878]
region q:149-312
[39879]
region r:149-312
[39880]
1nqo
complexed with g3h, nad; mutant
region a:149-312
[86045]
region c:149-312
[86047]
region o:149-312
[86049]
region q:149-312
[86051]
1npt
complexed with nad, so4; mutant
region o:149-312
[85988]
region p:149-312
[85990]
region q:149-312
[85992]
region r:149-312
[85994]
1nq5
complexed with nad, so4; mutant
region a:149-312
[86009]
region c:149-312
[86011]
region o:149-312
[86013]
region q:149-312
[86015]
1nqa
complexed with g3h, nad; mutant
region o:149-312
[86017]
region p:149-312
[86019]
region q:149-312
[86021]
region r:149-312
[86023]
1dbv
complexed with nad, so4; mutant
region o:149-312
[39881]
region p:149-312
[39882]
region q:149-312
[39883]
region r:149-312
[39884]
4dbv
complexed with ndp, so4; mutant
region o:149-312
[39889]
region p:149-312
[39890]
region q:149-312
[39891]
region r:149-312
[39892]
2dbv
complexed with ndp, so4; mutant
region o:149-312
[39885]
region p:149-312
[39886]
region q:149-312
[39887]
region r:149-312
[39888]
2gd1
complexed with so4
region o:149-312
[39893]
region p:149-312
[39894]
region q:149-312
[39895]
region r:149-312
[39896]
3dbv
complexed with nad, so4; mutant
region o:149-312
[39897]
region p:149-312
[39898]
region q:149-312
[39899]
region r:149-312
[39900]
Achromobacter xylosoxidans
[TaxId: 85698]
[89987] (1)
formerly Alcaligenes xylosoxidans
1obf
complexed with csw, k, pg4, so4
region o:153-314
[86769]
region p:153-314
[86771]
Thermus aquaticus
[TaxId: 271]
[55352] (13)
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region a:149-310
[134747]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region b:149-310
[134749]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region c:149-310
[134751]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region d:149-310
[134753]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region o:149-310
[134755]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region p:149-310
[134757]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region q:149-310
[134759]
2g82
automatically matched to d1cero2
complexed with gol, ipa, na, nad, pge
region r:149-310
[134761]
1cer
complexed with nad
region o:149-312
[39901]
region q:149-312
[39902]
region p:149-312
[39903]
region r:149-312
[39904]
1cer
duplicate of 1CER O:149-312
complexed with nad
region a:149-312
[118443]
1cer
duplicate of 1CER O:149-312
complexed with nad
region b:149-312
[118445]
1cer
duplicate of 1CER O:149-312
complexed with nad
region c:149-312
[118447]
1cer
duplicate of 1CER O:149-312
complexed with nad
region d:149-312
[118449]
Thermus thermophilus
[TaxId: 274]
[103101] (1)
1vc2
complexed with nad
region a:149-310
[100556]
Thermotoga maritima
[TaxId: 2336]
[55353] (1)
1hdg
complexed with nad, so4
region o:149-312
[39905]
region q:149-312
[39906]
Archaeon Sulfolobus solfataricus
[TaxId: 2287]
[55354] (1)
1b7g
CASP3
complexed with so4; mutant
region o:139-300
[39907]
region q:139-300
[39908]
Archaeon Methanothermus fervidus
[TaxId: 2180]
[55355] (1)
1cf2
complexed with nap, so4
region o:139-303
[39909]
region q:139-303
[39910]
region p:139-303
[39911]
region r:139-303
[39912]
Trypanosoma brucei brucei, glycosome
[TaxId: 5702]
[55356] (1)
1gga
complexed with nad, so4
region o:165-333
[39913]
region p:165-333
[39914]
region q:165-333
[39915]
region r:165-333
[39916]
region a:165-333
[39917]
region b:165-333
[39918]
Trypanosoma cruzi
[TaxId: 5693]
[75483] (7)
1k3t
complexed with brz
region a:165-333
[72023]
region b:165-333
[72025]
region c:165-333
[72027]
region d:165-333
[72029]
3dmt
automatically matched to d1k3ta2
complexed with gol, nad
region a:165-333
[157808]
3dmt
automatically matched to d1k3ta2
complexed with gol, nad
region b:165-333
[157810]
3dmt
automatically matched to d1k3ta2
complexed with gol, nad
region c:165-333
[157812]
3dmt
automatically matched to d1k3ta2
complexed with gol, nad
region d:165-333
[157814]
1ml3
complexed with cyx, nad
region a:165-333
[85002]
region b:165-333
[85004]
region c:165-333
[85006]
region d:165-333
[85008]
1qxs
complexed with nad, s70
region a:165-333
[96555]
region b:165-333
[96557]
region c:165-333
[96559]
region d:165-333
[96561]
Leishmania mexicana
[TaxId: 5665]
[55357] (5)
1i32
complexed with nmd
region a:166-334
[65994]
region b:166-334
[65996]
region c:166-334
[65998]
region d:166-334
[66000]
region e:166-334
[66002]
region f:166-334
[66004]
1gyp
complexed with nad, po4
region a:166-334
[39919]
region b:166-334
[39920]
region c:166-334
[39921]
region d:166-334
[39922]
1i33
complexed with tnd
region a:166-334
[66006]
region b:166-334
[66008]
region c:166-334
[66010]
region d:166-334
[66012]
region e:166-334
[66014]
region f:166-334
[66016]
1a7k
complexed with nad, po4
region a:166-334
[39923]
region b:166-334
[39924]
region c:166-334
[39925]
region d:166-334
[39926]
1gyq
complexed with nbd
region a:166-334
[39927]
region b:166-334
[39928]
region c:166-334
[39929]
region d:166-334
[39930]
American lobster (Homarus americanus)
[TaxId: 6706]
[55358] (2)
4gpd
region 1:148-311
[39931]
region 2:148-311
[39932]
region 3:148-311
[39933]
region 4:148-311
[39934]
1gpd
complexed with ips, nad, sps
region g:149-312
[39935]
region r:149-312
[39936]
South China Sea lobster (Palinurus versicolor)
[TaxId: 150436]
[55359] (5)
1dss
complexed with nad, so4
region g:149-312
[39937]
region r:149-312
[39938]
1szj
complexed with nad, so4
region g:149-312
[39939]
region r:149-312
[39940]
1crw
region g:149-312
[39941]
region r:149-312
[39942]
1ihx
complexed with snd, so4
region a:149-312
[71212]
region b:149-312
[71214]
region c:149-312
[71216]
region d:149-312
[71218]
1ihy
complexed with apr, so4
region a:149-312
[71220]
region b:149-312
[71222]
region c:149-312
[71224]
region d:149-312
[71226]
Human (Homo sapiens)
[TaxId: 9606]
[55360] (1)
3gpd
complexed with ips, nad, sps
region r:151-314
[39943]
region g:151-314
[39944]
Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]
[103102] (1)
1j0x
complexed with nad
region o:149-312
[90751]
region p:149-312
[90753]
region q:149-312
[90755]
region r:149-312
[90757]
Spinach (Spinacia oleracea)
[TaxId: 3562]
[69769] (24)
SQ
P19866
1rm4
complexed with ndp, so4
region a:149-312
[105001]
region b:149-312
[105003]
region o:149-312
[105005]
1rm5
complexed with ndp, so4; mutant
region a:149-312
[105007]
region b:149-312
[105009]
region o:149-312
[105011]
1rm3
complexed with ndp, so4; mutant
region a:149-312
[104995]
region b:149-312
[104997]
region o:149-312
[104999]
1nbo
complexed with nad, so4
region o:149-312
[85531]
region a:149-312
[85527]
region b:149-312
[85529]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region a:149-312
[139717]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region b:149-312
[139719]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region c:149-312
[139721]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region d:149-312
[139723]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region h:149-312
[139725]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region i:149-312
[139727]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region l:149-312
[139729]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region m:149-312
[139731]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region o:149-312
[139733]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region p:149-312
[139735]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region q:149-312
[139737]
2pkr
automatically matched to d1nboa2
complexed with ndp, so4
region r:149-312
[139739]
1jn0
complexed with ndp, so4
region o:149-312
[66920]
region a:149-312
[66916]
region b:149-312
[66918]
2hki
automatically matched to d1nboa2
complexed with so4
region a:153-315
[136552]
2pkq
automatically matched to d1nboa2
complexed with ndp, so4
region p:149-312
[139711]
2pkq
automatically matched to d1nboa2
complexed with ndp, so4
region r:149-312
[139713]
2pkq
automatically matched to d1nboa2
complexed with ndp, so4
region s:149-312
[139715]
2pkq
complexed with ndp, so4
region o:149-312
[145749]
2pkq
automatically matched to 2PKQ O:149-312
complexed with ndp, so4
region q:149-312
[145751]
2pkq
automatically matched to 2PKQ O:149-312
complexed with ndp, so4
region t:149-312
[145753]
Human(Homo sapiens), liver isoform
[TaxId: 9606]
[143535] (8)
SQ
P04406
151-314
1u8f
automatically matched to 1ZNQ O:152-315
complexed with nad
region o:152-315
[119627]
1u8f
automatically matched to 1ZNQ O:152-315
complexed with nad
region p:152-315
[119629]
1u8f
automatically matched to 1ZNQ O:152-315
complexed with nad
region q:152-315
[119631]
1u8f
automatically matched to 1ZNQ O:152-315
complexed with nad
region r:152-315
[119633]
1znq
complexed with nad
region o:152-315
[125402]
1znq
automatically matched to 1ZNQ O:152-315
complexed with nad
region p:152-315
[125404]
1znq
automatically matched to 1ZNQ O:152-315
complexed with nad
region q:152-315
[125406]
1znq
automatically matched to 1ZNQ O:152-315
complexed with nad
region r:152-315
[125408]
Malaria parasite (Plasmodium falciparum)
[TaxId: 5833]
[143536] (12)
SQ
Q8IKK7
153-318! SQ
Q8T6B1
153-318
2b4r
complexed with aes, gol, nad; mutant
region o:153-318
[127846]
2b4r
automatically matched to 2B4R O:153-318
complexed with aes, gol, nad; mutant
region p:153-318
[127848]
2b4r
automatically matched to 2B4R O:153-318
complexed with aes, gol, nad; mutant
region q:153-318
[127850]
2b4r
automatically matched to 2B4R O:153-318
complexed with aes, gol, nad; mutant
region r:153-318
[127852]
2b4t
automatically matched to 2B4R O:153-318
complexed with aes, nad; mutant
region o:153-318
[127857]
2b4t
automatically matched to 2B4R O:153-318
complexed with aes, nad; mutant
region p:153-318
[127859]
2b4t
automatically matched to 2B4R O:153-318
complexed with aes, nad; mutant
region q:153-318
[127861]
2b4t
automatically matched to 2B4R O:153-318
complexed with aes, nad; mutant
region r:153-318
[127863]
1ywg
complexed with nad
region o:153-318
[124146]
1ywg
automatically matched to 1YWG O:153-318
complexed with nad
region p:153-318
[124148]
1ywg
automatically matched to 1YWG O:153-318
complexed with nad
region q:153-318
[124150]
1ywg
automatically matched to 1YWG O:153-318
complexed with nad
region r:153-318
[124152]
Archaeon Pyrococcus horikoshii
[TaxId: 53953]
[143537] (4)
SQ
O59494
140-301
2czc
complexed with nad, po4
region a:140-301
[131044]
2czc
automatically matched to 2CZC A:140-301
complexed with nad, po4
region b:140-301
[145054]
2czc
automatically matched to 2CZC A:140-301
complexed with nad, po4
region c:140-301
[145056]
2czc
automatically matched to 2CZC A:140-301
complexed with nad, po4
region d:140-301
[145058]
Aspartate beta-semialdehyde dehydrogenase [55361]
Escherichia coli
[TaxId: 562]
[55362] (4)
SQ
P00353
1t4b
complexed with na
region a:134-354
[106407]
region b:134-354
[106409]
1t4d
region a:134-354
[106413]
region b:134-354
[106415]
region c:134-354
[106417]
1brm
region a:134-354
[39945]
region b:134-354
[39946]
region c:134-354
[39947]
1gl3
complexed with cys, ndp
region a:134-354
[65283]
region b:134-354
[65285]
Vibrio cholerae
[TaxId: 666]
[82725] (2)
1mb4
complexed with cys, ndp
region a:133-354
[78909]
region b:133-354
[78911]
1mc4
region a:133-354
[84928]
Haemophilus influenzae
[TaxId: 727]
[103103] (12)
SQ
P44801
1pqu
complexed with cac, cys, nap; mutant
region a:134-357
[104289]
region b:134-357
[104291]
region c:134-357
[104293]
region d:134-357
[104295]
1nwc
region a:134-357
[92230]
region b:134-357
[92232]
1nwh
complexed with hti
region a:134-357
[92234]
region b:134-357
[92236]
1oza
mutant
region a:134-357
[104046]
1pqp
complexed with as2, po4; mutant
region a:134-357
[104287]
1pu2
complexed with hti; mutant
region a:134-357
[104309]
1pr3
complexed with po4; mutant
region a:134-357
[104301]
1tb4
complexed with pej
region a:134-357
[112381]
1nx6
complexed with hti, po4
region a:134-357
[92284]
1q2x
complexed with hti; mutant
region a:134-357
[104504]
region b:134-357
[104506]
1ta4
complexed with art
region a:134-357
[112374]
1ps8
mutant
region a:134-357
[104305]
Streptococcus pneumoniae
[TaxId: 1313]
[143538] (11)
SQ
Q8DQ00
128-329
2gz1
automatically matched to 2GYY A:128-329
complexed with nap
region a:128-329
[135888]
2gz1
automatically matched to 2GYY A:128-329
complexed with nap
region b:128-329
[135890]
2gyy
region a:128-329
[135880]
2gyy
automatically matched to 2GYY A:128-329
region b:128-329
[135882]
2gyy
automatically matched to 2GYY A:128-329
region c:128-329
[135884]
2gyy
automatically matched to 2GYY A:128-329
region d:128-329
[135886]
2gz2
automatically matched to 2GYY A:128-329
complexed with a2p
region a:128-329
[135892]
2gz2
automatically matched to 2GYY A:128-329
complexed with a2p
region b:128-329
[135894]
2gz3
automatically matched to 2GYY A:128-329
complexed with as2, nap
region a:128-329
[135896]
2gz3
automatically matched to 2GYY A:128-329
complexed with as2, nap
region c:128-329
[135898]
2gz3
automatically matched to 2GYY A:128-329
complexed with as2, nap
region d:128-329
[135900]
Acetaldehyde dehydrogenase (acylating) [89988]
Pseudomonas sp.
[TaxId: 306]
[89989] (1)
1nvm
complexed with mn, mpd, nad, oxl, sul
region b:132-286
[86252]
region d:132-286
[86256]
region f:132-286
[86260]
region h:132-286
[86264]
N-acetyl-gamma-glutamyl-phosphate reductase ArgC [111046]
Thermotoga maritima
[TaxId: 2336]
[111047] (1)
SQ
Q9X2A2
1vkn
Structural genomics target
region a:145-307
[108677]
region b:145-307
[108679]
region c:145-307
[108681]
region d:145-307
[108683]
Thale cress (Arabidopsis thaliana)
[TaxId: 3702]
[118038] (5)
SQ
O82187
15-359
2q49
automatically matched to d1xyga2
region a:163-326
[139832]
2q49
automatically matched to d1xyga2
region b:163-326
[139834]
2q49
automatically matched to d1xyga2
region c:163-326
[139836]
2q49
automatically matched to d1xyga2
region d:163-326
[139838]
1xyg
region a:163-326
[116222]
region b:163-326
[116224]
region c:163-326
[116226]
region d:163-326
[116228]
Salmonella typhimurium
[TaxId: 90371]
[143539] (1)
SQ
Q8ZKL8
154-308
2g17
complexed with so4
region a:154-308
[134513]
Putative semialdehyde dehydrogenase [143540]
Rice (Oryza sativa)
[TaxId: 4530]
[143541] (4)
SQ
Q6AV34
219-383
2cvo
region a:219-383
[130878]
2cvo
automatically matched to 2CVO A:219-383
region b:219-383
[130880]
2cvo
automatically matched to 2CVO A:219-383
region c:219-383
[130882]
2cvo
automatically matched to 2CVO A:219-383
region d:219-383
[130884]
Usg-1 protein homolog PA3116 [143542]
Pseudomonas aeruginosa
[TaxId: 287]
[143543] (1)
SQ
O87014
130-319
2hjs
complexed with dio
region a:130-319
[136548]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk